CI01000299_00151569_00153623 (SLC5A3A)


Basic Information

Item Value
gene id CI01000299_00151569_00153623
gene name SLC5A3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 151519 ~ 154472 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_00151569_00153623.mRNA
CTATATGAGGCCCACCGAATTGTATGGCTTGATCCATCAACAAATAAAAAATGGCATCAACAATGGAAGCAGCAGATATCGTTGTCGTTGCCATGTACTTCGTTCTTGTCCTGTGCTTTGGCTTTTTTGCAATGTGGAGGGCAAATCGAGGTACCGTGAGTGGATACTTCCTAGCCGGACGTTCCATGAACTGGATAATGATCGGTGCATCACTGTTCGTCAGTAACATCGGCAGCGAGCACTTCATTGGCCTCGCTGGCTCAGGTGCAGCAAGCGGTTTCGCCGTTGCTGCTTGGGAATTCAATGCGATTCTACTGCTGCAGCTCCTGGGCTGGGTCTTCATACCCGTTTACATCCACTCAGGTGTGTACACCATGCCGGAGTACCTCTCCAAAAGATTCGGTGGTAAGCGGCTGAAGGTTTTCTTCGCGGCCCTAACTCTGCTCCTCTACATTTTCACCAAGCTCTCTGTGGATCTGTATTCCGGAGCACTCTTCATCCAGGAATCTCTGGGCTGGAATCTCTATGTGTCCATAATCCTGCTTATCACCATGACTGCCCTTCTTACAGTCACTGGTGGCCTAGCGGCGGTCATCTACACGGACACTCTTCAGGCTTTCCTCATGATATCGGGAGCTTTGTGCCTGATGGCTATCAGTTTAGTTAAGGTAGGAGGTCTCGAGAGTTTGCACACCAAGTACATGAATGCTGTTCCCAACATCACTGCCATTGTGCTAAAGAATAACATCACCTACTCAAATTCCTGCCATGTGGATCCCAAACCAGATTCGTTCAAGATCTTGAGAGGTCCGCTGGACAAAGAACTGCCGTGGCCTGCTTTTCTTCTGGGCCAGACTCCAGCCTCGATCTGGTATTGGTGCGCAGATCAGGTCATAGTCCAGAGAGTCCTGGCAGCTCGGAATATTGCCCACGCCAAAGGGTCGACCTTGATGGCCGGCGTCCTAAAAGTCTTACCGATGTTTATCATTGTAATTCCAGGGATGATCTCGCGTGTGCTCTTTGCTGATGAGCTTGCTTGCATTGGTCCAGAGCACTGCATGCAAGTCTGCAACAGCAAAGCTGGTTGCACTAACATTGCCTATCCTCGCCTCGTCATGAACGTTATGCCCGTAGGATTACGAGGTTTGATGATGGCCGTGATGCTCGCCGCTCTCATGAGTGATCTAGACTCAATCTTTAACAGCGCCAGTACTATCTTTACCCTTGATATCTATAAGATGGTACGTCACCAAACTTCCTCTAAAGAACTCATGGTGGTGGGACGCTTGTTTGTGATCTTCATAGTGGCCATTAGCATAGCTTGGGTCCCATTTGTCATTGAGTTGCAAGGTGGTCAGATGTTCCTCTACATTCAGGAGGTGTCTGACTACCTTACTCCACCCATTGCTGCACTGTTCCTGCTTGGCGTCCTCTGGAAACGTTGCAATGAGACCGGTGCATTCTGGGGTGGCATTGTGGGCTTCTTGCTAGGAGCCATAAGACTGATTCTCGCCTTTGTATATAGAGAGCCGGACTGTGACACAACCGATGACCGTCCTGCCTTTATCAAGGATATTCATTTCATGTATGTGGCAGCTGTATTGTTTTGGGTTTCAGGGCTCGTGACAGTCGTCGTCAGTCTTTGCACGGATCCACCAAGCAAGGAACAAATTGCTACAACTACTTTTTGGGGACTGCGCAACAGGAATCAACCCGCAGATGCACACACAAAAGAGATAGGAGGCAATGGCAAACTTTATCAGCTTTCGGCGGAAACAAAAAAAGAGAAGACATCGGATGAAGTGGAAATGAAACCATTATCTCAGGTTGTTCAAACAGGCCCTGAAATACTTTCAAATGGCCACTTGGAGTCTCAACATACCCACAAATATGCAGGGAGAGATAAGAGACAATGTGTGAAATGTTTGGAGTGGTTCTGTGGCTATAGTAAAAATTCAGAGGAAACAGATTCCTCTTGTGGAGATGACGACAGGAGTGTTACTGAGATGCTCAAAGAACCTCCAAAAACCAAAATTGTCCTCAATCTCGGCCTCTTGTTAGTGTGTACACTCGGAATTTTCTTGTTTGTATACTTCTCTTTGTAATGCTCATGATTCTATCTAATGTACAACTCAAAATGTAATGTGATAATGCCATTGCCAAGTATTACTGATACTCTTTAGTGCTGGTTACCAGTGCACTGCCAATACTGTACATTTGTTCAATGACTCATATTTAAACTCTAAACATGTCAGACATTCACATTATGTGTAATTAGTACACTGACTAACATAGCGATCAAAAGAATTGATGTCATTTGATGTGAGATTTAACAGGCAAATTTTACCATTGAAGCTGTTTTTTGTAAAGTCACGTCACCTACATATTTAGTGCTGATCATAATACCAAAGCTGCTTGAATTAACCATATGGTATTTCCTTAACCTCAAGGAATATTCATGGTTCAGTACAAGTTTAGCTCAATCAACAGCATTTGTGGCATAAAGTTGATTACTACAAAATTAATTTCCACTTTTTATTTTTTCTCACTTAACAGTGAGAAAAAAATAACAGTGAATGGGGCCAATCAATAAATGTTGAAATACTCACTGTTTCAATAGTATAGCCGCAACACATGCTTGTTAACACACATGCTTGTTACAGTACTGTAGAAAAATACAGAATTTTTTTTTTTTTTTTTTTTTTGCTTTTTTCCCACAAAAATAAAGAAAAATAATGATTTTTTATGGTAAACAACATTCTCACAAATGCTGTTGATTGACCTTAACCCAAAAATTCCTTCAAGTTTGGCATATTTGGTTATATTTTTTGTATTTTTTTATATATATATTTGTAACCTTACTAGCAGAGTAAGGCAGGTGAAAGCAGTCTGTGAGCTCTGTGACTTGTTCGTCAATCTCACCACTGAAACATCACTGCCCACCACTGACCCCA

Function

symbol description
slc5a3a Predicted to enable glucose:sodium symporter activity. Predicted to be involved in inositol metabolic process and myo-inositol transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A3 (solute carrier family 5 member 3).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006810 transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_00151569_00153623.mRNA True 2954 mRNA 0.43 1 151519 154472

Neighbor

gene id symbol gene type direction distance location
CI01000299_00097393_00132755 NA coding upstream 18764 97393 ~ 132755 (+)
CI01000299_00082987_00089134 NA coding upstream 61925 82723 ~ 89594 (+)
CI01000299_00069742_00072011 NA coding upstream 79435 69642 ~ 72084 (+)
CI01000299_00053877_00063101 NA coding upstream 88019 51951 ~ 63500 (+)
CI01000299_00042567_00045857 NA coding upstream 105328 42454 ~ 46191 (+)
CI01000299_00255175_00294177 MBNL2 coding downstream 100703 255175 ~ 294177 (+)
CI01000299_00315123_00328550 RAP2B, RAP2C, RAP2A, RAP2AB, RAP2A.S coding downstream 160651 315123 ~ 330163 (+)
CI01000299_00345042_00361660 KPNB3, IPO5.L, IPO5.S, IPO5 coding downstream 190570 345042 ~ 362086 (+)
CI01000299_00419297_00444862 NA coding downstream 264825 419297 ~ 445888 (+)
CI01000299_00689032_00727635 NA coding downstream 534434 688906 ~ 727836 (+)
G403952 NA non-coding downstream 396029 550501 ~ 550742 (+)
G403965 NA non-coding downstream 428284 582756 ~ 583123 (+)
G403971 NA non-coding downstream 448360 602832 ~ 603583 (+)
G404016 NA non-coding downstream 494943 649415 ~ 649814 (+)
G404137 NA non-coding downstream 916136 1070608 ~ 1075893 (+)
G403578 NA other upstream 79248 35462 ~ 72271 (+)
G403609 NA other downstream 209667 364139 ~ 410788 (+)
G403972 NA other downstream 450398 604870 ~ 606350 (+)
G405609 NA other downstream 3000125 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 3976786 4131060 ~ 4133941 (+)
G405842 NA other downstream 4141061 4295533 ~ 4320141 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000045 slc5a3a coding NC_007112.7 CM002885.2 2025085 ~ 2027100 (+)