CI01000299_00255175_00294177 (MBNL2)


Basic Information

Item Value
gene id CI01000299_00255175_00294177
gene name MBNL2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 255175 ~ 294177 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000299_00255175_00294177.mRNA
ATGGCTTTAAACATTGCGTCGATACGAGACACAAAATGGCTGACTCTCGAAGTGTGCCGGCAGTTTCAGAGAGGGACATGCTCGCGCAGCGACGAGGAATGCAAATTCGCACACCCACCCAAGAGCTGCCAGGTGGAGAACGGACGGGTGATCGCCTGCTTCGACTCGCTGAAGGGTCGGTGTACGAGAGAGAACTGTAAGTACCTTCACCCACCAGCGCATCTGAAGACGCAGCTGGAAATCAACGGACGCAACAACCTCATCCAGCAGAAGACCGCAGCAGCAATGCTGGCCCAGCAGATGCAGTTCATGATCCCTGGCACCACCATGCAACCAGTGCCTACATTTCCTGTCAGCCAAGGTCTGGGCTCAAGCCCTGGACTGAGTTACGCGCCGTATCTGACTCCCATGAGCCACGGGATGGGTCTGGTCCCTACAGAGATGCTCTCCAGCACCCCTGTCATCGTCCCCGGCAGCCCGCCGGTTAGCGTGCCGAGCTCATCCTCCACGCAGAAACTACTGCGCACAGACAAGCTCGAGGTGTGTCGCGAGTTTCAGCGGGGTAACTGCGCGCGTGGCGAGACCGACTGCCGCTTCGCCCATCCTAGCGACAGCCCCATGATTGACACGAGCGACAACACGGTCACCGTGTGCATGGACTACATCAAGAGCCGCTGTTCGCGCGAGAAGTGCAAGTATTTCCACCCTCCGGCACACCTGCAGGCCAAGATCAAAGCAGCCCAGCACCAGGCCAACCAGACTGCCGTCGCAGCGCAGGCCGCCGCTGCAGCCATGACTCAGTCGACTGCCAAAGCAATGAAGCGACCCCTCGAGGCATCTGTAGATCTGGCGTTTCCCCATGGAGTCCTGCAGCCCCTACCAAAGAGACCAGCACTAGAAAAGAGTAACGGGGCCAGTACTCTCTTCAACCCCAGTGTCTTGCACTACCAACAGGCTTTGGCCAACGCACAGCTTCAGCAGCCCACCGCTGCGTTCTTTCCCACAGGT

Function

symbol description
mbnl2 Predicted to enable RNA binding activity. Acts upstream of or within animal organ development; chordate embryonic development; and muscle cell development. Predicted to be active in cytoplasm and nucleoplasm. Is expressed in several structures, including chordo neural hinge; gonad; nervous system; pectoral fin bud; and solid lens vesicle. Used to study myotonic disease. Orthologous to human MBNL2 (muscleblind like splicing regulator 2).

GO:

id name namespace
GO:0007507 heart development biological_process

KEGG:

id description
K14943 MBNL; muscleblind

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000299_00255175_00294177.mRNA True 1008 mRNA 0.59 6 255175 294177

Neighbor

gene id symbol gene type direction distance location
CI01000299_00151569_00153623 SLC5A3A coding upstream 100703 151519 ~ 154472 (+)
CI01000299_00097393_00132755 NA coding upstream 122420 97393 ~ 132755 (+)
CI01000299_00082987_00089134 NA coding upstream 165581 82723 ~ 89594 (+)
CI01000299_00069742_00072011 NA coding upstream 183091 69642 ~ 72084 (+)
CI01000299_00053877_00063101 NA coding upstream 191675 51951 ~ 63500 (+)
CI01000299_00315123_00328550 RAP2B, RAP2C, RAP2A, RAP2AB, RAP2A.S coding downstream 20946 315123 ~ 330163 (+)
CI01000299_00345042_00361660 KPNB3, IPO5.L, IPO5.S, IPO5 coding downstream 50865 345042 ~ 362086 (+)
CI01000299_00419297_00444862 NA coding downstream 125120 419297 ~ 445888 (+)
CI01000299_00689032_00727635 NA coding downstream 394729 688906 ~ 727836 (+)
CI01000299_00795673_00796901 GPC6 coding downstream 501496 795673 ~ 797157 (+)
G403595 NA non-coding upstream 92380 60419 ~ 162795 (+)
G403952 NA non-coding downstream 256324 550501 ~ 550742 (+)
G403965 NA non-coding downstream 288579 582756 ~ 583123 (+)
G403971 NA non-coding downstream 308655 602832 ~ 603583 (+)
G404016 NA non-coding downstream 355238 649415 ~ 649814 (+)
G404137 NA non-coding downstream 776431 1070608 ~ 1075893 (+)
G403578 NA other upstream 182904 35462 ~ 72271 (+)
G403609 NA other downstream 69962 364139 ~ 410788 (+)
G403972 NA other downstream 310693 604870 ~ 606350 (+)
G405609 NA other downstream 2860420 3154597 ~ 3155174 (+)
CI01000299_04131136_04133439 PCNP other downstream 3837081 4131060 ~ 4133941 (+)
G405842 NA other downstream 4001356 4295533 ~ 4320141 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014651 mbnl2,LOC107677847,LOC107653675,LOC107555253,LOC107559795 coding CM030128.1 CM030128.1 25479791 ~ 25505003 (+)