XLOC_001409 (rnf24)


Basic Information

Item Value
gene id XLOC_001409
gene name rnf24
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 41770842 ~ 41817784 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002310
ACCACCAAAATCCTCAATCGACCACCACATGCAGTCGTATATGAGGAGCACACACAAACTTCACTCTAGTCTCAAGACGCCCGTGGATCGCTTTTACTTTCTGTTTGCGTGCAGCGGTGAACTCCCAGCTCGCGATGCCTCTGTTTATGTAGGCTTGTGTTGATATGTTAATAACGCGCTCGGATTTATGCTGATTAAAAGACGTGACTGATTTATTTATGGTCGCTCCTTAGAATAAAGTAGAGGTTTTGCATCGCGGAGGCGCTGAATTTGAGCCTTTTCCCATCAGTTTTGGGGTTTGTGATCGAGCAGGAGGGAGGAGTGGCGGAGAAACGGCTGGTTATCCATGACCTCAGATTTACAGCATTACAGTTTCAGGATGCCGAATATCGGGTTCCAAAACCTTCCTCTCAATATCTACATTGTCGTCTTTGGGACGGCCATATTCGTCTTCATCCTCAGCTTACTCTTCTGCTGCTACCTAATTCGGTTACGGCACCAGGCACACAAAGAGCTCTATGCATACAAGCAGGTTATTCAAAAGGAAAAGGTGAAAGAACTAAACTTGCATGAGATTTGTGCGGTGTGTTTGGAAGAATTCAAGCAGAAAGATGAGCTGGGAATCTGTCCGTGTAAACATGCCTTTCACAGAAAGTGCCTTATTAAATGGCTGGAGGTGAGGAAGGTTTGCCCGCTGTGCAACATGCCAGTCTTACAGCTGGCGCAGCAGCAGAGCATGTCTGAACCCATTGCCCCAACACAGCAACATCTGCCCGGGGTGGAGAACCTGGTCTAGAACCTTCTACAAATGTGACTGCCACTACTTTCACACTCCCTCCTGTACAGGTACATGCTCGTATCCAAGGACAGACTGCAGGATTGGCCCACGGTGACCTGTGACCTGCAAATGCTCAAGTCCTGCCTTGGTGGCTTTATAAAAGGATTATAAAGGATCTCCAAATTACAATAATAGATGATTTACTCAATCGGTCTTATTTGGATTTAGCTTTTTTCCCCTGTGGGATCATGAAGAAGAGTTTAAGTAACCGTTCCACGCCAAAGCACTTTTGTTGAGGATACCAGTGAGAGGCAAAACAGGACTTAAAAACAGCATTAAACACATTAAGATAATCTACAGTtttttaacaaacttttttttaaacaagcactTTACACAAAACTCAAACCTAATTGCTTGTGATAGTAGCAAGatcttgttttatattttataatttgaaactttttttttataaaggtgaTGTACGCAGAGCCACAGAGCAAAGTACCATTGGTTTTACTTTGATTAGAGAGGGTTAcgtttatactgtatattaaaggGACAGCAGCTCTCCaatgtgtatatgtttgtttgtttgtttgactgttTGTGCATCGATGGCCAAAACAAATGTGAATGCAGAGTTTGTCTTATTAGGGTCACGATCTGACCCAGCAGTATTTAATCTGTGTTCTGTGGATGTCTTtatattgaaaatgctttttaaactGAGGGCTGTGTtaaatacacattcacacacacacacaaacacacgtcgaCTGCTTTGAGTTCAAGGCTGTATTTGATAAGAATCTGAAACTAaccaaaaaa
>TCONS_00002311
GAGGAGCACACACAAACTTCACTCTAGTCTCAAGACGCCCGTGGATCGCTTTTACTTTCTGTTTGCGTGCAGCGGTGAACTCCCAGCTCGCGATGCCTCTGTTTATGTAGGCTTGTGTTGATATGTTAATAACGCGCTCGGATTTATGCTGATTAAAAGACGTGACTGATTTATTTATGGTCGCTCCTTAGAATAAAGTAGAGGTTTTGCATCGCGGAGGCGCTGAATTTGAGCCTTTTCCCATCAGTTTTGGGGTTTGTGATCGAGCAGGAGGGAGGAGTGGCGGAGAAACGGCTGGCTCCTGAGTTCTGAATCCTGCCTAAAACCCACAAAGATGATATATCTGCCAGTGTTATCCATGACCTCAGATTTACAGCATTACAGTTTCAGGATGCCGAATATCGGGTTCCAAAACCTTCCTCTCAATATCTACATTGTCGTCTTTGGGACGGCCATATTCGTCTTCATCCTCAGCTTACTCTTCTGCTGCTACCTAATTCGGTTACGGCACCA
>TCONS_00002312
ACCAAAATCCTCAATCGACCACCACATGCAGTCGTATATGAGGAGCACACACAAACTTCACTCTAGTCTCAAGACGCCCGTGGATCGCTTTTACTTTCTGTTTGCGTGCAGCGGTGAACTCCCAGCTCGCGATGCCTCTGTTTATGTAGGCTTGTGTTGATATGTTAATAACGCGCTCGGATTTATGCTGATTAAAAGACGTGACTGATTTATTTATGGTCGCTCCTTAGAATAAAGTAGAGGTTTTGCATCGCGGAGGCGCTGAATTTGAGCCTTTTCCCATCAGTTTTGGGGTTTGTGATCGAGCAGGAGGGAGGAGTGGCGGAGAAACGGCTGGTTATCCATGACCTCAGATTTACAGCATTACAGTTTCAGGATGCCGAATATCGGGTTCCAAAACCTTCCTCTCAATATCTACATTGTCGTCTTTGGGACGGCCATATTCGTCTTCATCCTCAGCTTACTCTTCTGCTGCTACCTAATTCGGTAAGATCACCTGTCTTTTCTACAGTGTGTGCAGAGCAGCAAAATGTGTTTCAACAAGCCTCAAAACGCCACACATTTTGCCTTATTTGCCTTCATCAGGTTTGAAAGTCTTGGCGTGATCATCAAAAACATACAGACTACAATACAGACCTGCTGCAATTCAAACATTTTCTAAGCATAATTTGCATCATGATTGGTTTGGAAATGAGTGAAAAGGCTTTAAAAAGAATTCACATGTGATTGTAGTTAAAACCTGTGGTGTAGAACAACACCAATGTACGTCAAACATCACCGTTATACCACAAATATCAGTTAGAGATTTTCAGGAATAACATATGCTGACGCCATACTACCTACTATGAAATTATGGCCACAAATGCTTG

Function

symbol description
rnf24 Predicted to enable ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in segmental plate. Orthologous to human RNF24 (ring finger protein 24).

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-40 Predicted to enable ubiquitin protein ligase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in segmental plate. Orthologous to human RNF24 (ring finger protein 24).

Ensembl:

ensembl_id ENSDARG00000036965

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002310 False 1609 mRNA 0.42 6 41770842 41817784
TCONS_00002311 False 513 mRNA 0.47 4 41783365 41817742
TCONS_00002312 True 869 lncRNA 0.42 2 41793301 41817781

Neighbor

gene id symbol gene type direction distance location
XLOC_001408 NA coding downstream 9680 41757056 ~ 41761162 (-)
XLOC_001406 NA coding downstream 162140 41599218 ~ 41608702 (-)
XLOC_001407 BX005288.1 coding downstream 169690 41601035 ~ 41601152 (-)
XLOC_001405 NA coding downstream 179708 41588155 ~ 41591134 (-)
XLOC_001404 NA coding downstream 237354 41532664 ~ 41533488 (-)
XLOC_001410 NA coding upstream 57153 41874937 ~ 41876777 (-)
XLOC_001411 adra1d coding upstream 139426 41957210 ~ 41982582 (-)
XLOC_001412 BX927206.1 coding upstream 459739 42277523 ~ 42277650 (-)
XLOC_001413 si:ch211-71k14.1 coding upstream 463524 42281308 ~ 42289861 (-)
XLOC_001414 lrrtm1 coding upstream 958769 42776553 ~ 42779075 (-)
XLOC_001415 CR925858.1 non-coding upstream 1156976 42974760 ~ 42974875 (-)
XLOC_001416 NA non-coding upstream 1313106 43130890 ~ 43155453 (-)
XLOC_001417 NA non-coding upstream 1700425 43518209 ~ 43617169 (-)

Expression


Co-expression Network