XLOC_001417


Basic Information

Item Value
gene id XLOC_001417
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 43518209 ~ 43617169 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003462
GAAATGCCGTCCCAATGGAAGAAAGAGATTGTCATGTCTTTGCCTGTCGTCAAACAACAGCTCAATTGGAGCTTGGGGTCAGTTTTCTGCCTGTTAAACGGTTGTTCTGCGTCCACATAAAGAAGATTGATCCTTGGTGTCCCATTCAAGATGACCAACCTCACTACAACACAACTTAACCTGCACGCACAAGGCTGCCTCGCTAGTATATCTGCCAACTGCAATCACATTAACCACTAACATTTTGACAAGAGCTGTTTGTCAGTCTCAAGCCTGATAAGATGGTAAGAGACTTATCCAGAAACTTCCATTGTTCGGCCCATCAGGCCTTCCCCGCTGACATGAGGCCATAAATGTGTCGAAATCTGAATAGTGGCTGTAACACAAAGCCAGTGCGCTCTTTTATGCCCATCCatcttttttgttcttttaaattGTGCCTTAAAAGACATCCGTCAAGATAAGCCATTTCTTATACTGAATGATTTTGATGCTAAAATGGCTAAttgtttgtacattttaaataaaatgtgtggATATACTCTACAGCACATGAACCCTTTTTTGAAATCCACACATTTAATTAAGCAAAATGTAtctaaaaagaatgaataaaattaccaaaatgtaaaaatatttaatgactAAATTGGATTGtacaattaaaaatgtcaaaagtgTAATGCGTAATTGCTTTGATATGCA
>TCONS_00003463
ACGTATCGCTCCGCCTGATTCGAATCGCGATTCAGTCGGGTCTTCTTATCAATAGAGCAGATAAATTATCGAGAAGCAGTTTGACAAAAAGCTAAATGCGAATGAAAAAATCATTGTCACCGATGAGGAAAATCAAGTTCACCAACTGCTGTTCAGTTAAAGATGCTGACTAACAAACTACACGTGTCGCGGCGACGCTAAAAAGagAAGAAAGCTAGCAGTGTGACTTTGGAACGTcgcaaggATTGTCATGTCTTTGCCTGTCGTCAAACAACAGCTCAATTGGAGCTTGGGGTCAGTTTTCTGCCTGTTAAACGGTTGTTCTGCGTCCACATAAAGAAGATTGATCCTTGGTGTCCCATTCAAGATGACCAACCTCACTACAACACAACTTAACCTGCACGCACAAGGCTGCCTCGCTAGTATATCTGCCAACTGCAATCACATTAACCACTAACATTTTGACAAGAGCTGTTTGTCAGTCTCAAGCCTGATAAGATGGTAAGAGACTTATCCAGAAACTTCCATTGTTCGGCCCATCAGGCCTTCCCCGCTGACATGAGGCCATAAATGTGTCGAAATCTGAATAGTGGCTGTAACACAAAGCCAGTGCGCTCTTTTATGCCCATCCatcttttttgttcttttaaattGTGCCTTAAAAGACATCCGTCAAGATAAGCCATTTCTTATACTGAATGATTTTGATGCTAAAATGGCTAAttgtttgtacattttaaataaaatgtgtggATATACTCTACAGCACATGAACCCTTTTTTGAAATCCACACATTTAATTAAGCAAAATGTAtctaaaaagaatgaataaaattaccaaaatgtaaaaatatttaatgactAAATTGGATTGtacaattaaaaatgtcaaaagtgTAATGCGTAATTGCTTTGATATGCA
>TCONS_00002972
ccggcccatacctagttgcaagcgtacaagtttgcgatgcagtttgcaaatgttcgtttgaacaatggatttgggaaacaccaaatcaacaaactatgtttgtaacgacgcaacttgcaaccttagttgtctaataatggttttcggaaacgcaccccaaaGAGATGTAGTGAGCAATCATTAAAATATGAAACCTGAGCCCAATAaactgtgtttgtttatttgtttttcagagAAGAAAGCTAGCAGTGTGACTTTGGAACGTcgcaaggATTGTCATGTCTTTGCCTGTCGTCAAACAACAGCTCAATTGGAGCTTGGGGTCAGTTTTCTGCCTGTTAAACGGTTGTTCTGCGTCCACATAAAGAAGATTGATCCTTGGTGTCCCATTCAAGATGACCAACCTCACTACAACACAACTTAACCTGCACGCACAAGGCTGCCTCGCTAGTATATCTGCCAACTGCAATCACATTAACCACTAACATTTTGACAAGAGCTGTTTGTCAGTCTCAAGCCTGATAAGATGGTAAGAGACTTATCCAGAAACTTCCATTGTTCGGCCCATCAGGCCTTCCCCGCTGACATGAGGCCATAAATGTGTCGAAATCTGAATAGTGGCTGTAACACAAAGCCAGTGCGCTCTTTTATGCCCATCCatcttttttgttcttttaaattGTGCCTTAAAAGACATCCGTCAAGATAAGCCATTTCTTATACTGAATGATTTTGATGCTAAAATGGCTAAttgtttgtacattttaaataaaatgtgtggATATACTCTACAGCACATGAACC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003462 False 705 lncRNA 0.38 2 43518209 43540087
TCONS_00003463 False 922 lncRNA 0.39 3 43518209 43617169
TCONS_00002972 True 804 lncRNA 0.41 2 43518355 43615138

Neighbor

gene id symbol gene type direction distance location
XLOC_001416 NA coding downstream 362756 43130890 ~ 43155453 (-)
XLOC_001415 CR925858.1 coding downstream 543334 42974760 ~ 42974875 (-)
XLOC_001414 lrrtm1 coding downstream 739134 42776553 ~ 42779075 (-)
XLOC_001413 si:ch211-71k14.1 coding downstream 1228348 42281308 ~ 42289861 (-)
XLOC_001412 BX927206.1 coding downstream 1240559 42277523 ~ 42277650 (-)
XLOC_001418 suclg1 coding upstream 35311 43652480 ~ 43684584 (-)
XLOC_001419 SLC9B2 coding upstream 77864 43695033 ~ 43727613 (-)
XLOC_001420 tacr3a coding upstream 184788 43801957 ~ 43892349 (-)
XLOC_001421 cnga1a coding upstream 277069 43894238 ~ 43899422 (-)
XLOC_001422 enam coding upstream 284797 43901966 ~ 43905263 (-)
XLOC_001410 NA non-coding downstream 1641432 41874937 ~ 41876777 (-)
XLOC_001408 NA non-coding downstream 1757047 41757056 ~ 41761162 (-)
XLOC_001427 CR385050.3 non-coding upstream 335129 43952298 ~ 43953627 (-)
XLOC_001440 BX908740.2 non-coding upstream 917456 44534625 ~ 44536218 (-)
XLOC_001453 NA non-coding upstream 1475775 45092944 ~ 45096173 (-)
XLOC_001458 LO017716.1 non-coding upstream 1689992 45307161 ~ 45313876 (-)
XLOC_001464 NA non-coding upstream 2021963 45639132 ~ 45647846 (-)

Expression


Co-expression Network