XLOC_001458 (LO017716.1)


Basic Information

Item Value
gene id XLOC_001458
gene name LO017716.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 45307161 ~ 45313876 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002390
TTTTGAGGTAGCCTAGTAGACTACTCACGTCATTGGCCGTAAACAGGTGGTCCATATTAATTTGCTGATTACACTAGCAGATTTCCCATACGAGCTCGGATGCGCTTGTGAGGAGAAGCGTTAAACTGGCGATGTCTTGCCAACTAAAAACATTAACTTCAATCCTTATATTATCAGCAATCTCACTTAATCTCAATAGTCTTCATTCTAGCGCTACGGCAAAGCGGGAAGCCGCTGATTATTCAGAAGAAAGCAGTTTCAATAGAGTGTCTAACAATTTCACCGACAAAACTTCACAACAGCTCCACATCAGCGCGTTTCAACTCAACGCAGCAAATTCGGATTTGAATCGACTTAGTGGCTCGATAAAACTTGACGACTCAAATGATCCTTCAGACAGAGCTAGCAATGAAACACAGTCGAGTAAACACACGTATGACTTGCCATACAACGACAGTGCATCTTTATTCACTATCAATGAAAACATACGAAGTAGTTTCCAGAAACGAGCATCTGTTATCGAGGACGGATTTCAAGGCGATGCTCCAGCTTTTGGAGGACGAGAAACGGCTGGGAAAATTTATGTTTCCAAAAGCTTGTCCAGCTTCCAAATCAGAGACATGCGGCTGGCTTTACCCATGGTACGCTGCTCAGAAGAGGTGATGACCATAACAATGGCTGGAAGAGAATACACACGGATATCTGTGGACAGAGTGGATGCAGACCCACTGCCCTTATTTCAGGTGCCTGCATATTGTGGCTTTTCTGTCAGGGTCACGTGGAAAGATTTGGTCCTAATGGCTCCTTATGATGGGTGCTTCATCACAAAAGAGAATGACAATTATGTACTTTCACTCTTGTGGTGGGACAGTCCCATAAAAATAACCTGTCCAATGGCACCTGTGACCTCAAATCCAACTCCCTCTGTCTTCTGCTCTGAATTCGGCATGGCCATTGCAATAAAAGGTGCTCAGCAAGCTGCAGAGAAACACAGAGTTAAAGTGAAGGGGAAGATACTGCCTCTCCTATCTGAGACATGTGCATATCGTTTGCCGTCTCCCCCTGAGGTAGTTCTGCTTTACATCCAATTCAACACAGGATGTGTGACTGTGATGGGCAATGAGATCAATCTTGTCATCATCGTGGATGGAAAGCAGTTCACCCTTTCATGTCCCTTTCCTCACTACTGGTCTCGATTTGGTCCCTACCTTCATTCTCCATACTATCAACCACTGCAGCCCAGTCAGATACCCAGTACTTATGAGTACCAGAAACCGCCTGGTCTCTTTCATCTCATGTTtccccatcatcatcatcatcatcatcaccgtcATCGTCATTATCCTGCACCTCCTGTGGATGCTCTTCCCAAATTTTCAATAAAGCCATATCTGCCTCCACCTGTTGAGCAAATGCCACAAATGTTTCAGTACCCAGTTTTGCCTCCTCTGTATCTTGAGCCGTCCATTGATTTGCAACCAACTACCCCTCCAGTGACTTCATTTCTTCCTCCTACATACAATCCACCGACCCGTTCCGTCATGCAAGAGAAGGTTTTCCCTCAAATGCCCATCTTTCCCCCAGCTCCCCCTGCAAAACCTTCCAAAACATCTCCGTCACTTCATTGCACAAGAGACAGATTAATTGTAACTTTGGCCTCAGCAACAATAGACTCCATTAAGGTCAAAGGTAAGTTCAAGTGTAGTGGCCATTTCATTGCCGGAATATAAACACAATTAGACATTTAAATGCATTGCTCTTCTCATAATATTCGTAAAGATGTGGAGACAAAAGAATGGATCTCGATTTCATCGGTGTCCGCTGCCTGTAACTACAACCTTCGCTCTGTAGGGGATAATGTTGTGCTCTCTTCACCACTCCCTTCCTGCCACACAACACAAAAGGTGAGTCCTCAGTGCTGAGATTTTACACATTCACTACATTCAAATCAGAAGGGCTCTTTCATATGCCCTAATCCCTTTAAAGGAACCCTTCTTTGCTCAAAGCATCATGGCTCAAAATAGCCATTGTATCCTTTAAAACCCTTTACCCCAAAGGTCAGCTTTGAGCATGTATGTTTATAATGACACTTCATTATGGCGGCATTGATAATTTTCACTCCAAAAGTGCCCTTTGGAGGGCTATGT
>TCONS_00002389
TTTTGAGGTAGCCTAGTAGACTACTCACGTCATTGGCCGTAAACAGGTGGTCCATATTAATTTGCTGATTACACTAGCAGATTTCCCATACGAGCTCGGATGCGCTTGTGAGGAGAAGCGTTAAACTGGCGATGTCTTGCCAACTAAAAACATTAACTTCAATCCTTATATTATCAGCAATCTCACTTAATCTCAATAGTCTTCATTCTAGCGCTACGGCAAAGCGGGAAGCCGCTGATTATTCAGAAGAAAGCAGTTTCAATAGAGTGTCTAACAATTTCACCGACAAAACTTCACAACAGCTCCACATCAGCGCGTTTCAACTCAACGCAGCAAATTCGGATTTGAATCGACTTAGTGGCTCGATAAAACTTGACGACTCAAATGATCCTTCAGACAGAGCTAGCAATGAAACACAGTCGAGTAAACACACGTATGACTTGCCATACAACGACAGTGCATCTTTATTCACTATCAATGAAAACATACGAAGTAGTTTCCAGAAACGAGCATCTGTTATCGAGGACGGATTTCAAGGCGATGCTCCAGCTTTTGGAGGACGAGAAACGGCTGGGAAAATTTATGTTTCCAAAAGCTTGTCCAGCTTCCAAATCAGAGACATGCGGCTGGCTTTACCCATGGTACGCTGCTCAGAAGAGGTGATGACCATAACAATGGCTGGAAGAGAATACACACGGATATCTGTGGACAGAGTGGATGCAGACCCACTGCCCTTATTTCAGGTGCCTGCATATTGTGGCTTTTCTGTCAGGGTCACGTGGAAAGATTTGGTCCTAATGGCTCCTTATGATGGGTGCTTCATCACAAAAGAGAATGACAATTATGTACTTTCACTCTTGTGGTGGGACAGTCCCATAAAAATAACCTGTCCAATGGCACCTGTGACCTCAAATCCAACTCCCTCTGTCTTCTGCTCTGAATTCGGCATGGCCATTGCAATAAAAGGTGCTCAGCAAGCTGCAGAGAAACACAGAGTTAAAGTGAAGGGGAAGATACTGCCTCTCCTATCTGAGACATGTGCATATCGTTTGCCGTCTCCCCCTGAGGTAGTTCTGCTTTACATCCAATTCAACACAGGATGTGTGACTGTGATGGGCAATGAGATCAATCTTGTCATCATCGTGGATGGAAAGCAGTTCACCCTTTCATGTCCCTTTCCTCACTACTGGTCTCGATTTGGTCCCTACCTTCATTCTCCATACTATCAACCACTGCAGCCCAGTCAGATACCCAGTACTTATGAGTACCAGAAACCGCCTGGTCTCTTTCATCTCATGTTtccccatcatcatcatcatcatcatcaccgtcATCGTCATTATCCTGCACCTCCTGTGGATGCTCTTCCCAAATTTTCAATAAAGCCATATCTGCCTCCACCTGTTGAGCAAATGCCACAAATGTTTCAGTACCCAGTTTTGCCTCCTCTGTATCTTGAGCCGTCCATTGATTTGCAACCAACTACCCCTCCAGTGACTTCATTTCTTCCTCCTACATACAATCCACCGACCCGTTCCGTCATGCAAGAGAAGGTTTTCCCTCAAATGCCCATCTTTCCCCCAGCTCCCCCTGCAAAACCTTCCAAAACATCTCCGTCACTTCATTGCACAAGAGACAGATTAATTGTAACTTTGGCCTCAGCAACAATAGACTCCATTAAGGTCAAAGATGTGGAGACAAAAGAATGGATCTCGATTTCATCGGTGTCCGCTGCCTGTAACTACAACCTTCGCTCTGTAGGGGATAATGTTGTGCTCTCTTCACCACTCCCTTCCTGCCACACAACACAAAAGGTGAGTCCTCAGTGCTGAGATTTTACACATTCACTACATTCAAATCAGAAGGGCTCTTTCATATGCCCTAATCCCTTTAAAGGAACCCTTCTTTGCTCAAAGCATCATGGCTCAAAATAGCCATTGTATCCTTTAAAACCCTTTACCCCAAAGGTCAGCTTTGAGCATGTATGTTTATAATGACACTTCATTATGGCGGCATTGATAATTTTCACTCCAAAAGTGCCCTTTGGAGGGCTATGT

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0008152 metabolic process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0006473 protein acetylation biological_process
GO:0016569 covalent chromatin modification biological_process
GO:0016570 histone modification biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:1990234 transferase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016604 nuclear body cellular_component
GO:0016607 nuclear speck cellular_component
GO:1902494 catalytic complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0071005 U2-type precatalytic spliceosome cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117778

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002390 False 2147 lncRNA 0.44 7 45307161 45313876
TCONS_00002389 True 2057 lncRNA 0.45 8 45307161 45313876

Neighbor

gene id symbol gene type direction distance location
XLOC_001457 ddx39aa coding downstream 91818 45205920 ~ 45215343 (-)
XLOC_001456 zgc:111983 coding downstream 129760 45173421 ~ 45177401 (-)
XLOC_001455 mucms1 coding downstream 149918 45149844 ~ 45157243 (-)
XLOC_001454 si:ch211-239f4.6 coding downstream 160327 45138905 ~ 45146834 (-)
XLOC_001453 NA coding downstream 210988 45092944 ~ 45096173 (-)
XLOC_001459 si:ch73-90k17.1 coding upstream 2187 45316063 ~ 45320126 (-)
XLOC_001460 zgc:101679 coding upstream 18765 45332641 ~ 45341851 (-)
XLOC_001461 si:ch211-243a20.4 coding upstream 28058 45341934 ~ 45347393 (-)
XLOC_001462 grin2bb coding upstream 58686 45372562 ~ 45553602 (-)
XLOC_001463 atf7ip coding upstream 256183 45570059 ~ 45636362 (-)
XLOC_001440 BX908740.2 non-coding downstream 770943 44534625 ~ 44536218 (-)
XLOC_001427 CR385050.3 non-coding downstream 1353534 43952298 ~ 43953627 (-)
XLOC_001417 NA non-coding downstream 1689992 43518209 ~ 43617169 (-)
XLOC_001416 NA non-coding downstream 2151708 43130890 ~ 43155453 (-)
XLOC_001464 NA non-coding upstream 325256 45639132 ~ 45647846 (-)
XLOC_001466 NA non-coding upstream 382958 45696834 ~ 45700570 (-)
XLOC_001468 NA non-coding upstream 518899 45832775 ~ 45837990 (-)
XLOC_001469 NA non-coding upstream 525119 45838995 ~ 45839877 (-)
XLOC_001471 NA non-coding upstream 871342 46185218 ~ 46185851 (-)

Expression


Co-expression Network