XLOC_001457 (ddx39aa)


Basic Information

Item Value
gene id XLOC_001457
gene name ddx39aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 45205920 ~ 45215343 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002387
TACTGCTTCACAGCCATGATTGGCGTCATACACATCCAATGGATGAGCTCGGTTTTTATATCCGGGAAGCGCTGTAAACTTAAGGCCTAAGCACACGATTCTCCAGTGCCGACGTTCAGTACCAACATTAAAAGttACCATGGCCGAGAacgatgttgaaaatgagctgttggACTATGAGGAAGATGAGGAGCCACAGCCCACTGTAGACAGCGGAGCCACCACTGGCAAGAAGGAGGTTAAAGGGTCTTACGTGTCCATCCACAGCTCCGGATTCCGAGATTTCCTCCTGAAACCAGAGTTGCTCCGCGCTATCGTTGACTGTGGCTTTGAACATCCTTCTGAGGTCCAGCATGAGTGCATCCCACAAGCCATCCTGGGCATGGACATCCTGTGCCAGGCAAAGTCTGGAATGGGAAAGACTGCCGTGTTTGTGCTTGCCACACTGCAACAGATCGAGCCTGTGGATGGACAGGTTTCTGTGTTGGTTATGTGCCACACACGAGAACTGGCCTTCCAGATCAGTAAAGAGTACGAGCGCTTCTCCAAGTACATGTCCAGTGTAAAGTGTGCCGTCTTTTTCGGTGGCATGTCTATAAAGAAGGATGAAGACGTGTTGAAGAAGAACTGCCCACACATTGTTGTGGGAACGCCAGGGAGGATTCTTGCCCTCAGTCGCAACAAGACCTTGACCCTCAAAAACGTCAAACACTTTGTTTTGGACGAATGTGACAAGATGCTGGAGCAGTTGGATATGAGACGGGATGTCCAGGATATCTTCAGACTGACCCCTCACGAGAAGCAGTGCATGATGTTCAGTGCTACATTAAGCAAAGAGATCAGACCGGTCTGTCGCAAATTCATGCAAGATCCAATGGAGGTATTTGTTGATGACGAAACTAAGCTTACCCTGCATGGTCTTCAGCAGTACTATGTCAAACTGAAGGACAGCGAGAAGAACCGCAAATTGTTTGACCTGCTCGATGTTCTGGAGTTTAACCAGGTGGTGATATTCGTCAAGTCTGTTCCACGCTGCGTGGCTCTGTCTCAGTTGCTGGTTGAACAGAATTTCCCTGCCATTGCGATCCACAGAGGAATGACTCAGGAAGAAAGGTTATCTCGATATCAGCAGTTTAAAGACTTTCAGCGGCGGATTCTGGTGGCTACGAATCTGTTTGGTCGAGGGATGGATATTGAGCGTGTTAATATTGTCTTCAACTATGACATGCCTGAGGATTCAGACACATACCTTCACAGGGTTGCTCGTGCTGGCAGGTTTGGCACAAAAGGTTTGGCCGTCACCTTTGTGTCAGATGAGACCGATGCGAAGATCCTGAATGATGTGCAGGACCGCTTTGAAGTCAACGTGGCCGAGTTGCCTGAGGAAATCGACATCTCCACCTACATCGAGCAGTCCAGATGAGCAGTGTGTGCTGAAGTGATGGTGGCTGTTGTCCAGCTCTCCCAATCGGTGTCTCAGTGTAGTTTCTGTGACCGCGGAAGAGCCAACCGCCTGTTTTATTTTCATATGATCATGCCCAAAAAGCCTCCTCTCTGTTTTTGTGTACTTCTTATTTTATTGTTCCAGGGGATTGGTGGGGAGTCATTTTTTACTTCTGTTAATTGTGGTTGTTTGTTGGTTTgagaattaaaaacattttatacta
>TCONS_00002388
AAGGTGCTGCAAGAGCTTTAATGTAGTGTTCTATCTATTTTGTTGTAAGCCTTAATTGTGACTAACAACAACTAAGCTttACCATGGCCGAGAacgatgttgaaaatgagctgttggACTATGAGGAAGATGAGGAGCCACAGCCCACTGTAGACAGCGGAGCCACCACTGGCAAGAAGGAGGTTAAAGGGTCTTACGTGTCCATCCACAGCTCCGGATTCCGAGATTTCCTCCTGAAACCAGAGTTGCTCCGCGCTATCGTTGACTGTGGCTTTGAACATCCTTCTGAGGTCCAGCATGAGTGCATCCCACAAGCCATCCTGGGCATGGACATCCTGTGCCAGGCAAAGTCTGGAATGGGAAAGACTGCCGTGTTTGTGCTTGCCACACTGCAACAGATCGAGCCTGTGGATGGACAGGTTTCTGTGTTGGTTATGTGCCACACACGAGAACTGGCCTTCCAGATCAGTAAAGAGTACGAGCGCTTCTCCAAGTACATGTCCAGTGTAAAGTGTGCCGTCTTTTTCGGTGGCATGTCTATAAAGAAGGATGAAGACGTGTTGAAGAAGAACTGCCCACACATTGTTGTGGGAACGCCAGGGAGGATTCTTGCCCTCAGTCGCAACAAGACCTTGACCCTCAAAAACGTCAAACACTTTGTTTTGGACGAATGTGACAAGATGCTGGAGCAGTTGGATATGAGACGGGATGTCCAGGATATCTTCAGACTGACCCCTCACGAGAAGCAGTGCATGATGTTCAGTGCTACATTAAGCAAAGAGATCAGACCGGTCTGTCGCAAATTCATGCAAGAT

Function

symbol description
ddx39aa Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in mRNA export from nucleus and mRNA splicing, via spliceosome. Orthologous to human DDX39A (DExD-box helicase 39A).

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006406 mRNA export from nucleus biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4275 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in mRNA export from nucleus and mRNA splicing, via spliceosome. Orthologous to human DDX39A (DExD-box helicase 39A).

Ensembl:

ensembl_id ENSDARG00000006225

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002387 False 1667 mRNA 0.48 10 45205920 45215343
TCONS_00002388 True 815 mRNA 0.49 5 45211172 45213565

Neighbor

gene id symbol gene type direction distance location
XLOC_001456 zgc:111983 coding downstream 28519 45173421 ~ 45177401 (-)
XLOC_001455 mucms1 coding downstream 48677 45149844 ~ 45157243 (-)
XLOC_001454 si:ch211-239f4.6 coding downstream 59086 45138905 ~ 45146834 (-)
XLOC_001453 NA coding downstream 109747 45092944 ~ 45096173 (-)
XLOC_001452 rps6 coding downstream 156317 45043767 ~ 45049603 (-)
XLOC_001458 LO017716.1 coding upstream 91818 45307161 ~ 45313876 (-)
XLOC_001459 si:ch73-90k17.1 coding upstream 100720 45316063 ~ 45320126 (-)
XLOC_001460 zgc:101679 coding upstream 117298 45332641 ~ 45341851 (-)
XLOC_001461 si:ch211-243a20.4 coding upstream 126591 45341934 ~ 45347393 (-)
XLOC_001462 grin2bb coding upstream 157219 45372562 ~ 45553602 (-)
XLOC_001440 BX908740.2 non-coding downstream 669702 44534625 ~ 44536218 (-)
XLOC_001427 CR385050.3 non-coding downstream 1252293 43952298 ~ 43953627 (-)
XLOC_001417 NA non-coding downstream 1588751 43518209 ~ 43617169 (-)
XLOC_001416 NA non-coding downstream 2050467 43130890 ~ 43155453 (-)
XLOC_001464 NA non-coding upstream 423789 45639132 ~ 45647846 (-)
XLOC_001466 NA non-coding upstream 481491 45696834 ~ 45700570 (-)
XLOC_001468 NA non-coding upstream 617432 45832775 ~ 45837990 (-)
XLOC_001469 NA non-coding upstream 623652 45838995 ~ 45839877 (-)

Expression


Co-expression Network