XLOC_001456 (zgc:111983)


Basic Information

Item Value
gene id XLOC_001456
gene name zgc:111983
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 45173421 ~ 45177401 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002384
TCTGTGTTCTTTTAGAGGTGAGCACAGACTGGTAACAGGACCTTCACTGCTATAAGGATTAATCTGCACTGCATTTTTGGTGGGatatttaaaaagctTTGTGCTATAAAAACATAGCGATGGAGTGGAGGATTATACTACCTGTTCTGTGTCTGATTGGGATCCTAAATCTGCCTGGATATGTTGTTTCTCAACAAGCCGTAACACCTTCAGCAACTTCAACTACAACAACTACAGCTACAACAACGACTACAACTACAGCTACAACTACAGCTACACCAACTACATCTACAACTACGACTACACCAACTACATCTACAGCTGTGACTACAACAACTACAGTGCCTACATCTACAACCACTGCAACTACACATTCATCTGGAGCCACAACAGCTTCAACTGCATCTGGAGCCACAACAGCTTCAACCGCATCTGGAGCTACAACAGCTTCAACCGCATCTGGAGCCACAACAGCTTCCACTGCATCTGGAGCCACAACAGCTTCCACTGCATCTGGAGCCACAACAGCTTCCACTGCATCTGGAGCCACAACAGCTTCCACTGCATCTGGAGCCACAACAGCTTCTACAGCTGGAAGTCAAGCTACGACTCTACCTGCCAATGTTCAATCTGTTAATTTGATTTTCAAGATTGAGGATCAATTCCAGGCATACTACAGTGACTTCACTGATCCAAGGACCATATCGTATGTGCAAAATATCACAGCTCAGTTTAATACAGTTTACAAGAAAAGTTATCAAAACTACATCAGGATGATTATTAAAAAGCTGAGTTCTGGCTCTGTTGCGGCAGATGCTGATTTTCAGTTTAATACCAGCATTTCCTCGGCTCCTAATGCCACCGATGCGAAAAACACCCTTGTTCAGGCAATTAACAATAAAGAATTCACCTTTACAATAAATAGCACATCCATCACTACTGTGGACGGATCGAGTACAACAGCTTCACCAGTTACTACTCAAACTACAACAGTAGCCACAACGGCTGTAGTCCTAAGCAACTATAATATCACCTTCAAAATGGCAGGTGTCTTTTTCAGTGATCTGGCAAACCTCAACTCTAAAGCAGGTAGTCTTCTGTCATTGGCAGTCAGCGGTCAGctgaattatttttacagtaatttcagAGGCTTCAATGGTGCAAACGTTTGGCGGTTCAGgAATGGCTCCATTTATGTAGATGCTTTGCTTGTATTTATCAAAAACATTAATGCTCCTAACGCAACAGAGCTGGCTAAAGAATTAGGTGCTGCTGTCAGAAACCAAACAATCTTTTTGCCAATTGATCCTACAACTATCAACATAACAGACTTCACAGGATTCAGTGcGAGCAAGTCTCCGGTGCTGGCTAGTATGCTAACAGCATTGTGGATGACCTTAGCATCCCTTCTGTTGTCAGCTGTGATGCACTAAGCTTCACATTCACTGCAGCAAAAACACCACATCATGCTACTACACAACAATCATGGTTGTGGTCACACTCAGAATCAGAAAATCAAGATGCAAACGAGTCAAGTTATGATCTAGCTTTATCATTTACTAGTCTTTCTTGTCACATTTAGCCTGGTGATACATATGGTATGTGTGAGTTAAAGTAATTTAGTCTCTGCTTTACAAAAAGCACATTGTTACACAATGCACATTGAGGAATAATGAGGATTGGTTTATTAAAACCGAATCTGAACAATCCTCTATGCCACAGAAATGGCACAAGTGGAATTTATCTAAAGAATGAAATGTATCTTTATCAatgttaattagttatttttgtaaCCAAAGTACACATGTGAAATCTATGTATTTAATCTGAGTAACATAAATGAAGAATTGTTCTGATGAATGATCTGTATATTGTTTTATGAAGTACtgatgtttaataaaatgaaggGGAATCCTGTTTTCATTTGTAATGTCTGCAATTTTCCAAATAAACACTATACCTACATTAA
>TCONS_00002385
ACAGTTTACAAGAAAAGTTATCAAAACTACATCAGGATGATTATTAAAAAGCTGAGTTCTGGCTCTGTTGCGGCAGATGCTGATTTTCAGTTTAATACCAGCATTTCCTCGGCTCCTAATGCCACCGATGCGAAAAACACCCTTGTTCAGGCAATTAACAATAAAGAATTCACCTTTACAATAAATAGCACATCCATCACTACTGTGGACGGATCGAGTACAACAGCTTCACCAGTTACTACTCAAACTACAACAGTAGCCACAACGGCTGTAGTCCTAAGCAACTATAATATCACCTTCAAAATGGCAGGTGTCTTTTTCAGTGATCTGGCAAACCTCAACTCTAAAGCAGGTAGTCTTCTGTCATTGGCAGTCAGCGGTCAGGTAATAAACTAGACTTTGAATATATTTGCATGTCAGTCTAATTAATCATTGCCTTGTTgatcaatataatattaaaatatcaattaacctgtttgttcatttgttatagctgaattatttttacagtaatttcagAGGCTTCAATGGTGCAAACGTTTGGCGGTTCAGGTAAAATTTTATGATACCGTTCTAAAAAGCAGCATTAtcacagaatatgttttatgttttacatagcagctCTAGACTAGTTCATTACCAACtagtctttcatttatttttctcaggAATGGCTCCATTTATGTAGATGCTTTGCTTGTATTTATCAAAAACATTAATGCTCCTAACGCAACAGAGCTGGCTAAAGAATTAGGTGCTGCTGTC
>TCONS_00002386
CTGGTAACAGGACCTTCACTGCTATAAGGATTAATCTGCACTGCATTTTTGGTGGGatatttaaaaaaaaaaagaaactcataaagatttgaaaccacttgagcgCAAGTAAATAgctTTGTGCTATAAAAACATAGCGATGGAGTGGAGGATTATACTACCTGTTCTGTGTCTGATTGGGATCCTAAATCTGCCTGGATATGTTGTTTCT

Function

symbol description
zgc:111983 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; periderm; pharynx; post-vent region; and sensory system. Orthologous to human APOBR (apolipoprotein B receptor).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-335 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; periderm; pharynx; post-vent region; and sensory system. Orthologous to human APOBR (apolipoprotein B receptor).

Ensembl:

ensembl_id ENSDARG00000006588

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002384 False 1969 mRNA 0.40 10 45173421 45177401
TCONS_00002385 False 765 lncRNA 0.37 3 45174356 45175482
TCONS_00002386 True 211 mRNA 0.37 4 45176403 45177373

Neighbor

gene id symbol gene type direction distance location
XLOC_001455 mucms1 coding downstream 16178 45149844 ~ 45157243 (-)
XLOC_001454 si:ch211-239f4.6 coding downstream 26587 45138905 ~ 45146834 (-)
XLOC_001453 NA coding downstream 77248 45092944 ~ 45096173 (-)
XLOC_001452 rps6 coding downstream 123818 45043767 ~ 45049603 (-)
XLOC_001451 smu1b coding downstream 131211 45012391 ~ 45042210 (-)
XLOC_001457 ddx39aa coding upstream 28519 45205920 ~ 45215343 (-)
XLOC_001458 LO017716.1 coding upstream 129760 45307161 ~ 45313876 (-)
XLOC_001459 si:ch73-90k17.1 coding upstream 138662 45316063 ~ 45320126 (-)
XLOC_001460 zgc:101679 coding upstream 155240 45332641 ~ 45341851 (-)
XLOC_001461 si:ch211-243a20.4 coding upstream 164533 45341934 ~ 45347393 (-)
XLOC_001440 BX908740.2 non-coding downstream 637203 44534625 ~ 44536218 (-)
XLOC_001427 CR385050.3 non-coding downstream 1219794 43952298 ~ 43953627 (-)
XLOC_001417 NA non-coding downstream 1556252 43518209 ~ 43617169 (-)
XLOC_001416 NA non-coding downstream 2017968 43130890 ~ 43155453 (-)
XLOC_001464 NA non-coding upstream 461731 45639132 ~ 45647846 (-)
XLOC_001466 NA non-coding upstream 519433 45696834 ~ 45700570 (-)
XLOC_001468 NA non-coding upstream 655374 45832775 ~ 45837990 (-)
XLOC_001469 NA non-coding upstream 661594 45838995 ~ 45839877 (-)

Expression


Co-expression Network