LOC110513354 (LOC106569852)


Basic Information

Item Value
gene id LOC110513354
gene name LOC106569852
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86222196 ~ 86223952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987761.1
ggcacacacacagaaccaggaAGTTTCGTATTACTCTTGTGGAGgccactcctcttcctctgcaCAAACAAGGAAATCGAAAGTTATCTCTGATACTCCTCTGCGCCGTTTGTTAGTGAGTGTCAAAATGGCAGAGGCATTTTTTGAAGATCGGGATTCATTTAGCTGTTCAATCTGCTTGGATATACTGAAGGATCCGGTGACTACTTCCTGTGGACACAACTACTGTATGGGCTGTATTGAGGGCTGCTGGGATCAGGACGATCTGAAAGGTGTTTACAGCTGCCCAGAGTGCCGACAGACCTTCGTCCAAAGGCCTGTTCTGAACAGAAACACGTTGCTGGCTAAAGTGGTGGAGAAACTGAAACATACTGCTCTTCAtgctgctcctcctgctgctcctcatGCTGatcctcctgctgctcctcatgctgctcctcctgctgctcctcctgcTCACTGTTAtgctggacctggagatgtggAGTGTGATTTCTGCACTGGGAGAAAACACAAAGCCCTCATGTCCTGTCTGGCGTGTCTGGTctcttactgtgagactcacctcCAGCCTCACTATAATTTCCCTGCCTTAAAGAAGCACATGCTGGTCAAAGCCTCCACACAACTACAGGAGAAGATCTGTTCTCAACATGacaaactgctggaggtttaCTGTCGTACCGATCAGCAGTGTATCTGTTATCTATGTACCATGGATGAACATAAAGGCCATGATACAGTCtcagctgcagcagagaggactgAGAAACAGAAGCAGGTGGGGGagaaacaacagaaatcccagcAGAgaatccaggagagagagaaggagatgcagGAGCTGAGACAGGCTGTGGACTCTCTGAAGCTCTCTGCACAGGCAGCCGTGGACGACAGCGAGAGGATCTTTGCTGAGCTTATCCGCACCATGGAGACAAGGTGCTCTgaggtgaaggagctgatcaGAGACCAGGAGAAGGCTGAAGTGAGTCAGTCTGAAGGCCTCCTGGAGCGACTGGAGCAGGaggtggctgagctgaggaggAGAGATTCTGAGCTGGAGAAGTTCTCTCACACAGAGGACAACATCCACTTCCTCCAGAGGTTTAAAGACCACAGTGCCCCCCCTGTTTCTGAAGAGATGCCTGCCGTCATCCTTAACCAAAGTCGTGATTTTAAGACGgtgatgacctctgacctccagGAAAAGCTGATGCTCTGCTGTAAGGAGGGAGTAGTGGAGATATCAGCAGCAGTGAAAGCTGTCCACATACTGCAGTCAGCAGAGCCAAGCACCCAAGCAGCAGCATCTGTCGCACAATATCACAGGAAGTATTATCAAAAATACTCTTTCAAGGATATATGTGTTCATTGTCGCAAGATAAAAATGTGTCATGGCCCCATGGGTAAATGTTTATAGTTTAATTAAGGAGTGATAATACTATCCTCATCTTGTAGATAAACTATGTGccaggagagagtgtgtgtgtttgttgtgtgtcacagttcaacttttacttttacttcactacattcctagaTAAGTTAACGTACTGTTTACTCCACTGACACCCAAAAATACTAGTTttagaatgcttagcaggaccggAACATTATCCAATTCACgcccttatcaagagaacatccctggtcatccctactgcctctgatctgatggactcaataaacagagaacatccctggtcatccctactgcctctgatctgatggactcactaaacagagaacatccc

Function

NR:

description
tripartite motif-containing protein 47-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987761.1 True 1757 mRNA 0.48 1 86222196 86223952

Neighbor

gene id symbol gene type direction distance location
LOC110531925 adgrb3 coding downstream 175020 85891577 ~ 86047176 (-)
LOC118964521 NA coding downstream 590037 85630601 ~ 85632159 (-)
LOC110519057 col19a1 coding downstream 597480 85358222 ~ 85624716 (-)
LOC110510598 LOC106594326 coding downstream 922555 85247338 ~ 85299641 (-)
LOC110510599 LOC106613623 coding downstream 977755 85213382 ~ 85244441 (-)
LOC110531234 LOC106563028 coding upstream 11287 86235239 ~ 86287517 (-)
LOC110531245 LOC106562987 coding upstream 75088 86299040 ~ 86349770 (-)
LOC110532855 LOC106562987 coding upstream 129728 86353680 ~ 86402164 (-)
LOC118966040 LOC106592896 coding upstream 378370 86602322 ~ 86650167 (-)
LOC118936335 LOC106592896 coding upstream 439563 86663515 ~ 86698225 (-)
G97106 NA non-coding downstream 2772 86218653 ~ 86219424 (-)
G97103 NA non-coding downstream 5328 86215548 ~ 86216868 (-)
G97105 NA non-coding downstream 7930 86213996 ~ 86214266 (-)
G97086 NA non-coding downstream 58893 86162154 ~ 86163303 (-)
G97087 NA non-coding downstream 59211 86162324 ~ 86162985 (-)
G97124 NA non-coding upstream 15023 86238975 ~ 86240104 (-)
G97130 NA non-coding upstream 22098 86246050 ~ 86246947 (-)
G97133 NA non-coding upstream 31935 86255887 ~ 86256120 (-)
G97137 NA non-coding upstream 39296 86263248 ~ 86263590 (-)
G97138 NA non-coding upstream 39991 86263943 ~ 86265805 (-)
G97047 LOC106577388 other downstream 70857 86146009 ~ 86153321 (-)
G96002 NA other downstream 870430 85346858 ~ 85351766 (-)
G95784 NA other downstream 1062883 85157742 ~ 85159313 (-)
G97176 NA other upstream 168609 86392561 ~ 86393089 (-)
G97251 NA other upstream 342525 86566477 ~ 86623311 (-)
G97308 NA other upstream 563105 86787057 ~ 86788052 (-)
G97535 NA other upstream 1070405 87294357 ~ 87294999 (-)
LOC110531505 LOC106597820 other upstream 1689350 87911053 ~ 87919678 (-)

Expression


Co-expression Network