LOC118966040 (LOC106592896)


Basic Information

Item Value
gene id LOC118966040
gene name LOC106592896
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86602322 ~ 86650167 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987939.1
AAATACATATCTGAACACTGCACTCGCCCACTCAGGTCAGAGCCTTATCATCGTCTGATGGGAGAGGACGCATGTTTCTGAGGAATTTTTATTGTTGATCGTAGCACTGAACATTGTGCGTGCATCGAAATATCAAATGTCTCTTTCAGGAATAATGGAGACTGGACCAGACAGTCTGTTTGTgactctcctgtttctcctccaCAGTTCACTCTCTGAGTCAGAGAGGTTTGAGGTTCTTGGTCCAACTGATCCCATTGTTGCTGTAGCTGGTGATGACATCATTCTGCCCTGTCACCTCAAACCCAACATCAGCGCTGAGGACATGACAGTGGACTGGCTGAACCTGGACTTCAAAGATGGTCGTGTCTTTCGTTACCAAAACAGAAAAATCATACGAGAGGATCAGATTCCCTCCTACAAAGAAAGAACTTCACTGTTTCAAGAAGAACTCTGGAGGGGAAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGTTTTATTAAGGCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCTTtgagggacacagagagggagggatgggtctGCTGTGTGAAACAGAAGGCTGGCACCCTCAGCCTGAGCTGGTGTGGTGGGACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTCCTGAGATAGATAAAGACTTCAAGGGATTCTACAGAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCAGGATCAATgagaagatggagacagagattcACCTCCCTAGTGAGTTGTTTCATCACACTAGCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTGTGGGAGCCTTCACTGTGATTGGGTTATCTCTGGCTATCTTCTGGATAAACAGTAAGAAAGTTAACCTCAGTAGGATGCTAGATGTCCTCAGGAAGGAGAAGGTTAACCTCAAGAAACTCTGGGAGCAGAATGATGACATCAAAAATAAGCTAGatgaacacaaGGATAAGTTAGATGACCTCACTAAGATGCTAGATGTCCTCATGAAGGAGAGGGATGAAACCGAGGGACTCTGTAACCAGAGTGAGGGAACTCGTTAAGGTGAAGTAGGATGTGACTCTAGACCAGGGATACTCAAGTCCTATTTGAGACGGACCGGTGACACACATTTCCTAGGTGACAAAGGATCAGATGGAGAATCAGCGTAGTATCAACCCCCCAACTCACAACCCCAcgcaaactgttcacacccctcttgttggcgaCGAGaacatgttgcagttttaaagctgatttcctgcaattctacacattttgcatggGGGCAGAGATTTCTTTAGCTGTTTTATAGCTGATTTCCTGCAATTCTCCACATTCCTCCATGTCTTATGTGTGTTTATATGATACCAGGGGTCAAAGCCCGAcctattaaaaaaataaagagcACATTCTGCTCCTTCACTGAGAAACGCTCCATTCTTCATCCCTGGTATTATTGATAGTCTCTCAGTGGTCATCTGTCCTGTAGAcgtcactgactgactgttttaAAACAAACCAGGCTGGTATAAACAGTTAGCAATAGGAGAgagtttatttaacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgaaggcctaggaacagtgggttaactgtattgttcaagggcagaacgacagatttttacagctcagggattcagctcagggattcaatcttgcaaccttctggttactagtccaacactctaaccactaggctacctgcctctaaccactaggctacctgtacatGAGTCCTCAGATTTCCTGtcagtctttgttgttgttgtagactGGGCCAGTTGATTGTTTATTGGATAGGACAGAGAGGTAAAGGTAGGAATGTTGAAAGATAAATTGGATGGTTCTGAACGCCTGCTGGTACTGGACTATCCCAGACCACTGATTTCTTGTCAATGTTTGACGAATCTTTGACGTGTCTTTCACCCGTCCCTTGGACTGTTCTGTCTTGAGGAGAATGTGCTACATATTTTTATTCTCTGTGTTTTCTAACAGTATTTGTTATGTATCCATTCTGCTGTGTGCTTCAATATTTAGGTAAGAATTTAGCAGCAACACAAAATACATGTGTATGAATGTATCATTTGATTATAACATtttccaaataaagtgtgattaAAAGAG
>XM_036987922.1
TGGAAATACATATCTGAACACTGCACTCGCCCACTCAGGTCAGAGCCTTATCATCGTCTGATGGGAGAGGACGCATGTTTCTGAGGAATTTTTATTGTTGATCGTAGCACTGAACATTGTGCGTGCATCGAAATATCAAATGTCTCTTTCAGGAATAATGGAGACTGGACCAGACAGTCTGTTTGTgactctcctgtttctcctccaCAGTTCACTCTCTGAGTCAGAGAGGTTTGAGGTTCTTGGTCCAACTGATCCCATTGTTGCTGTAGCTGGTGATGACATCATTCTGCCCTGTCACCTCAAACCCAACATCAGCGCTGAGGACATGACAGTGGACTGGCTGAACCTGGACTTCAAAGATGGTCGTGTCTTTCGTTACCAAAACAGAAAAATCATACGAGAGGATCAGATTCCCTCCTACAAAGAAAGAACTTCACTGTTTCAAGAAGAACTCTGGAGGGGAAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGTTTTATTAAGGCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCTTtgagggacacagagagggagggatgggtctGCTGTGTGAAACAGAAGGCTGGCACCCTCAGCCTGAGCTGGTGTGGTGGGACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTCCTGAGATAGATAAAGACTTCAAGGGATTCTACAGAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCAGGATCAATgagaagatggagacagagattcACCTCCCTAGTGAGTTGTTTCATCACACTAGCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTGTGGGAGCCTTCACTGTGATTGGGTTATCTCTGGCTATCTTCTGGATAAACAGTAAGAAAGTTGACCTCACTGAGAATGAGGATGTTAACCTCAGTAGGATGCTAGATGTCCTCAGGAAGGAGAAGGTTAACCTCAAGAAACTCTGGGAGCAGAATGATGACATCAAAAATAAGCTAGatgaacacaaGGATAAGTTAGATGACCTCACTAAGATGCTAGATGTCCTCATGAAGGAGAGGGATGAAACCGAGGGACTCTGTAACCAGAGTGAGGGAACTCGTTAAGGTGAAGTAGGATGTGACTCTAGACCAGGGATACTCAAGTCCTATTTGAGACGGACCGGTGACACACATTTCCTAGGTGACAAAGGATCAGATGGAGAATCAGCGTAGTATCAACCCCCCAACTCACAACCCCAcgcaaactgttcacacccctcttgttggcgaCGAGaacatgttgcagttttaaagctgatttcctgcaattctacacattttgcatggGGGCAGAGATTTCTTTAGCTGTTTTATAGCTGATTTCCTGCAATTCTCCACATTCCTCCATGTCTTATGTGTGTTTATATGATACCAGGGGTCAAAGCCCGAcctattaaaaaaataaagagcACATTCTGCTCCTTCACTGAGAAACGCTCCATTCTTCATCCCTGGTATTATTGATAGTCTCTCAGTGGTCATCTGTCCTGTAGAcgtcactgactgactgttttaAAACAAACCAGGCTGGTATAAACAGTTAGCAATAGGAGAgagtttatttaacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgaaggcctaggaacagtgggttaactgtattgttcaagggcagaacgacagatttttacagctcagggattcagctcagggattcaatcttgcaaccttctggttactagtccaacactctaaccactaggctacctgcctctaaccactaggctacctgtacatGAGTCCTCAGATTTCCTGtcagtctttgttgttgttgtagactGGGCCAGTTGATTGTTTATTGGATAGGACAGAGAGGTAAAGGTAGGAATGTTGAAAGATAAATTGGATGGTTCTGAACGCCTGCTGGTACTGGACTATCCCAGACCACTGATTTCTTGTCAATGTTTGACGAATCTTTGACGTGTCTTTCACCCGTCCCTTGGACTGTTCTGTCTTGAGGAGAATGTGCTACATATTTTTATTCTCTGTGTTTTCTAACAGTATTTGTTATGTATCCATTCTGCTGTGTGCTTCAATATTTAGGTAAGAATTTAGCAGCAACACAAAATACATGTGTATGAATGTATCATTTGATTATAACATtttccaaataaagtgtgattaAAAGAG
>XM_036987937.1
TTCCCAACCAATCAGAGCACTTGGAAATACATATCTGAACACTGCACTCGCCCACTCAGGTCAGAGCCTTATCATCGTCTGATGGGAGAGGACGCATGTTTCTGAGGAATTTTTATTGTTGATCGTAGCACTGAACATTGTGCGTGCATCGAAATGAATAATGGAGACTGGACCAGACAGTCTGTTTGTgactctcctgtttctcctccaCAGTTCACTCTCTGAGTCAGAGAGGTTTGAGGTTCTTGGTCCAACTGATCCCATTGTTGCTGTAGCTGGTGATGACATCATTCTGCCCTGTCACCTCAAACCCAACATCAGCGCTGAGGACATGACAGTGGACTGGCTGAACCTGGACTTCAAAGATGGTCGTGTCTTTCGTTACCAAAACAGAAAAATCATACGAGAGGATCAGATTCCCTCCTACAAAGAAAGAACTTCACTGTTTCAAGAAGAACTCTGGAGGGGAAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGTTTTATTAAGGCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCTTtgagggacacagagagggagggatgggtctGCTGTGTGAAACAGAAGGCTGGCACCCTCAGCCTGAGCTGGTGTGGTGGGACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTCCTGAGATAGATAAAGACTTCAAGGGATTCTACAGAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCAGGATCAATgagaagatggagacagagattcACCTCCCTAGTGAGTTGTTTCATCACACTAGCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTGTGGGAGCCTTCACTGTGATTGGGTTATCTCTGGCTATCTTCTGGATAAACAGTAAGAAAGTTGACCTCACTGAGAATGAGGATGTTAACCTCAGTAGGATGCTAGATGTCCTCAGGAAGGAGAAGGTTAACCTCAAGAAACTCTGGGAGCAGAATGATGACATCAAAAATAAGCTAGatgaacacaaGGATAAGTTAGATGACCTCACTAAGATGCTAGATGTCCTCATGAAGGAGAGGGATGAAACCGAGGGACTCTGTAACCAGAGTGAGGGAACTCGTTAAGGTGAAGTAGGATGTGACTCTAGACCAGGGATACTCAAGTCCTATTTGAGACGGACCGGTGACACACATTTCCTAGGTGACAAAGGATCAGATGGAGAATCAGCGTAGTATCAACCCCCCAACTCACAACCCCAcgcaaactgttcacacccctcttgttggcgaCGAGaacatgttgcagttttaaagctgatttcctgcaattctacacattttgcatggGGGCAGAGATTTCTTTAGCTGTTTTATAGCTGATTTCCTGCAATTCTCCACATTCCTCCATGTCTTATGTGTGTTTATATGATACCAGGGGTCAAAGCCCGAcctattaaaaaaataaagagcACATTCTGCTCCTTCACTGAGAAACGCTCCATTCTTCATCCCTGGTATTATTGATAGTCTCTCAGTGGTCATCTGTCCTGTAGAcgtcactgactgactgttttaAAACAAACCAGGCTGGTATAAACAGTTAGCAATAGGAGAgagtttatttaacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgaaggcctaggaacagtgggttaactgtattgttcaagggcagaacgacagatttttacagctcagggattcagctcagggattcaatcttgcaaccttctggttactagtccaacactctaaccactaggctacctgcctctaaccactaggctacctgtacatGAGTCCTCAGATTTCCTGtcagtctttgttgttgttgtagactGGGCCAGTTGATTGTTTATTGGATAGGACAGAGAGGTAAAGGTAGGAATGTTGAAAGATAAATTGGATGGTTCTGAACGCCTGCTGGTACTGGACTATCCCAGACCACTGATTTCTTGTCAATGTTTGACGAATCTTTGACGTGTCTTTCACCCGTCCCTTGGACTGTTCTGTCTTGAGGAGAATGTGCTACATATTTTTATTCTCTGTGTTTTCTAACAGTATTTGTTATGTATCCATTCTGCTGTGTGCTTCAATATTTAGGTAAGAATTTAGCAGCAACACAAAATACATGTGTATGAATGTATCATTTGATTATAACATtttccaaataaagtgtgattaAAAGAG
>XM_036987927.1
CTTGGAAATACATATCTGAACACTGCACTCGCCCACTCAGGTCAGAGCCTTATCATCGTCTGATGGGAGAGGACGCATGTTTCTGAGGAATTTTTATTGTTGATCGTAGCACTGAACATTGTGCGTGCATCGAAATATCAAATGTCTCTTTCAGGAATAATGGAGACTGGACCAGACAGTCTGTTTGTgactctcctgtttctcctccaCAGTTCACTCTCTGAGTCAGAGAGGTTTGAGGTTCTTGGTCCAACTGATCCCATTGTTGCTGTAGCTGGTGATGACATCATTCTGCCCTGTCACCTCAAACCCAACATCAGCGCTGAGGACATGACAGTGGACTGGCTGAACCTGGACTTCAAAGATGGTCGTGTCTTTCGTTACCAAAACAGAAAAATCATACGAGAGGATCAGATTCCCTCCTACAAAGAAAGAACTTCACTGTTTCAAGAAGAACTCTGGAGGGGAAACACCTCTTTGAAACTGACCAGGGTACAAGGCACTGATGAGGGACATTACAAATGTTTTATTAAGGCAAAGAGCTGGTATGATGATTTCACTGTTCAAGTCCTCGTTAAAGctGTAGGATCCAAGCCAGTGGTGTCCTTtgagggacacagagagggagggatgggtctGCTGTGTGAAACAGAAGGCTGGCACCCTCAGCCTGAGCTGGTGTGGTGGGACAGTAAAGGAGTCCATCTCTCTGCTGGTCCTCCTGAGATAGATAAAGACTTCAAGGGATTCTACAGAGTCAAACAACATGTCATTGTCCAGGAGACTGACACCAACCGCTTTACCTGCAGAGTCCAACAGAGCAGGATCAATgagaagatggagacagagattcACCTCCCTAGTGAGTTGTTTCATCACACTAGCCCATGGAGAATGGCCTTCATTGTGTTATGCTGTGTGGGAGCCTTCACTGTGATTGGGTTATCTCTGGCTATCTTCTGGATAAACAGTAAGAAAGTTGACCTCACTGAGAATGAGGATGTTAACCTCAGTAGGATGCTAGATGTCCTCAGGAAGGAGAAGGTTAACCTCAAGAAACTCTGGGAGCAGAATGATGACATCAAAAATAAGCTAGatgaacacaaGGATAAGTTAGATGACCTCACTAAGATGCTAGATGTCCTCATGAAGGAGAGGGATGAAACCGAGGGACTCTGTAACCAGAGTGAGGGAACTCGTTAAGGTGAAGTGTAAGTAAGAGGATGTGACTCTAGACCAGGGATACTCAAGTCCTATTTGAGACGGACCGGTGACACACATTTCCTAGGTGACAAAGGATCAGATGGAGAATCAGCGTAGTATCAACCCCCCAAC

Function

NR:

description
butyrophilin subfamily 2 member A1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987939.1 False 2282 mRNA 0.44 15 86602322 86650143
XM_036987922.1 False 2309 mRNA 0.44 16 86602322 86650146
XM_036987937.1 False 2312 mRNA 0.44 16 86602322 86650167
XM_036987927.1 True 1335 mRNA 0.46 16 86603307 86650148

Neighbor

gene id symbol gene type direction distance location
LOC110532855 LOC106562987 coding downstream 200158 86353680 ~ 86402164 (-)
LOC110531245 LOC106562987 coding downstream 252552 86299040 ~ 86349770 (-)
LOC110531234 LOC106563028 coding downstream 314805 86235239 ~ 86287517 (-)
LOC110513354 LOC106569852 coding downstream 378370 86222196 ~ 86223952 (-)
LOC110531925 adgrb3 coding downstream 555146 85891577 ~ 86047176 (-)
LOC118936335 LOC106592896 coding upstream 13348 86663515 ~ 86698225 (-)
LOC118966041 NA coding upstream 80764 86730919 ~ 86732537 (-)
LOC110518258 LOC105008825 coding upstream 133657 86783824 ~ 86864120 (-)
LOC118966043 NA coding upstream 276272 86926439 ~ 86954561 (-)
LOC110532959 LOC106577289 coding upstream 307731 86957898 ~ 87049090 (-)
G97227 NA non-coding downstream 5415 86482107 ~ 86596907 (-)
G97256 NA non-coding downstream 21286 86580000 ~ 86581036 (-)
G97211 NA non-coding downstream 22522 86577760 ~ 86579800 (-)
G97255 NA non-coding downstream 26353 86572941 ~ 86575969 (-)
G97210 LOC106592896 non-coding downstream 29453 86572169 ~ 86572869 (-)
G97278 NA non-coding upstream 87110 86737277 ~ 86739833 (-)
G97283 slc1a4 non-coding upstream 103578 86753745 ~ 86756765 (-)
G97285 NA non-coding upstream 106893 86757060 ~ 86757361 (-)
G97287 NA non-coding upstream 110021 86760188 ~ 86760829 (-)
G97176 NA other downstream 209233 86392561 ~ 86393089 (-)
G97047 LOC106577388 other downstream 450983 86146009 ~ 86153321 (-)
G96002 NA other downstream 1250556 85346858 ~ 85351766 (-)
LOC110510598 LOC106594326 other downstream 1341790 85247338 ~ 85299641 (-)
LOC110510599 LOC106613623 other downstream 1377172 85213382 ~ 85244441 (-)
G97308 NA other upstream 136890 86787057 ~ 86788052 (-)
G97535 NA other upstream 644190 87294357 ~ 87294999 (-)
LOC110531505 LOC106597820 other upstream 1263135 87911053 ~ 87919678 (-)
pex13 LOC106592834 other upstream 1413295 88054545 ~ 88065123 (-)
G98510 NA other upstream 1568662 88218829 ~ 88220804 (-)

Expression


Co-expression Network