G97047 (LOC106577388)


Basic Information

Item Value
gene id G97047
gene name LOC106577388
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86146009 ~ 86153321 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU107204
AATGGTTACAATGAAGATTTGGGTAGGGTAAACCAATCCCAAATCTGTATCTTAAAGCCACAGAATTGTCCCACTTAGCTGACCTGAGGAGTGCCTGACCAGATGTCCCTCATGTGATCACAGATAGCCTTGGCTGCAGACATGGCACTGGACAGCTTCCTGGCCGCGATAACCGCAGCACCCCTCTGCTGCActgtctgaggggggggggggggggagaggagagggaggaagagcgaTGCCTTACAAAATGTCTCATCCCTACTCCAATAGTCTTCTTCAGCCGTCTCAATTCATCTTTCCAGGATTCCTCTCCCCTTATCAAAACACATGAAGGTCAGAGGTCACTTTCCCTTGGACCATCTCCaatgagaagggggggggggttaaagttCACACAGCCAGATGAACATTTGTTTCACAGTAGAGTAAACTCACAGAAATGAAGGCCCCTTTGAGCCAGTCATCGTCCTTAACAGCGTCGAAGCAGGCCAGGTCGCTGCCCGCCATGTTGACCTTGGTGTAGTAAAATAACAAGGACATATTGTTAAATAATATTACACATAGTGTAATGCCTTGCAGTAGTGAATACTAATACTTCATAACATTGTGATAAATGATATATTACCTTGCAGTGGTGAACGTCTGGGTACTGGGTGGACGAATGGTTGCCCCAGATGATCACGTTCTTTACCTGGGTGGCTGGCACGCCGCAGCGCATCGCAACCTGGTGGGGGAGGGAGGcaagagagctgtGTACCTGAGAGCGGGCTCGGTTGTGGTCCAGACGGGTCAGGCAGGAGAAGTTCTCTTTGGGGATGGACGGGGCAGACTTGGCTGCGATCAGACAGTTGGTGTTGGCTGGGTTACCTACCACCAGGACTGACAGTTTTCTTGGCGTACTTCTCCAGCGCGGCACCCTGGCTCTTGAAGATGGCCACGTTAGCCTTGAGCAGATCCTTCCTCTCCATACCCTCTCTCCTGGGCATGGAGCCCACCAGGATAGCAGCGTCCAGGTCCTTAAAGGCAACCTCCTCCTTGTCTGTGGGGATGACCTCTGAAAACAGATGGAATAAACAGGGGCTTTTGTTCAGTCA
>TU107200
TTCAGTtgataaatgttttattgtttcaTCAGGAGTGAGTCCAGGGAGATAATATCCAGAGGTTTGAAACATAATTAACCATTGAAACACTTTACTGTCCTGGGTTTTACAGATTAGAATGTGCTACCCCCTAGTGGCAGGACTATGCCATAACCACCTGCTACGATTATACATCGTAGGATTACAGGCGGTGATCACATTCAGATTGTCAAATATCATAATGGGAAAATGCCAAAtagtaaacaaaacaaaaaaattagGGTAAATATTAATTTAACCAAGAGTTGTTTCACAAAAATATTAAGTTAAATCTAGAAACACTATAAGGACTATACATTATTTGCTGATTTTATTGTTCTGACTGAGCAACAATTTAACAGTTGAACAATGATCGTCATAGTAACTACTAGTGCATCAACTACCCATAACAATTCTCCATTCCATGGTAAGCATGGTAACCATCCAAACAGGGATAACCTGTTCAGAAGTGTGTAACATTAATGTTTAGGACACAGAGCTGCAGCAGTGAGTGTATCATGCCATGTTCATGTGCTATCAGAATGACCAGAAACtcaggtctaaaaaaaaaaataattgctgTAAAACGTATGAAGTTAAACCGTTCATATGGAACTTCCAAGTTGGATATTCCAGAGTTTCCTAAATTCTGAGTAGCACGTGAATGCAGCATCACAGACGTGAGTCTGGAGGTGTGGGTTCTGCATCCAAGTGCTGTTGCCGGGTTGGTTGCCGTGGCTGGGAGCGTAGTCAAGCGCTGAGGAAGGTGACGGCGgtgtccctctcctccaccagctCGGCTGCCGTGGCGTCCATCTTGCCTCGGGAGAAGTCGTTGATGGCCAACCCGTCCACAATCTTCCACTGCTTGTCCTGAGGAGAACAAAGACAGAAGAATAATGTATATTGAATAATAGGCCAAAGTGATCAACTTCCCACTGCAACAGGTAGTTGGTCGTAGACTACAGCACCTGTTTGTAGTCAATAGAAGCAGAGCTCTCTGGTTAAGAAGGTGATGACAGCTGATCTTAGAGCACAATTCTGATCTTTCGCCCAATCAGATAAGATCTTTcgccaataattgggcaaaagatcagaattgtgcTGACAATGTAAACGCAGCCTTAgtatagagagtagagagcaggTGTAGAGAGCAGAGTGTCAGGGATCTGTCTCACCTTGATGTGAACAGGGAATGAGTAGATGAGGTCTTCAGCGACACCATAGGAGTTACTGCTGGAGTAGACACCCATGGAGACAAACTCTCCCTGCAAACAcaagaggtcagaggttagggctACGTTCAGGAACCATTAACCTAAAGACAGGCTGCTCCACACTGTGTTCAGGAGCCATTAACCTAAAGACAGGCTGCTCCACCCTCTTCCCAAAGTGTGCAACTGCACACATCTCATAAATGTAACAATGGCCTCCAGCCAAATA

Function

NR:

description
PREDICTED: malate dehydrogenase, cytoplasmic-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107204 False 1097 TUCP 0.41 3 86146009 86151339
TU107200 True 1464 lncRNA 0.41 2 86151470 86153321

Neighbor

gene id symbol gene type direction distance location
LOC110531925 adgrb3 coding downstream 104294 85891577 ~ 86047176 (-)
LOC118964521 NA coding downstream 519311 85630601 ~ 85632159 (-)
LOC110519057 col19a1 coding downstream 526754 85358222 ~ 85624716 (-)
LOC110510598 LOC106594326 coding downstream 851829 85247338 ~ 85299641 (-)
LOC110510599 LOC106613623 coding downstream 907029 85213382 ~ 85244441 (-)
LOC110513354 LOC106569852 coding upstream 68875 86222196 ~ 86223952 (-)
LOC110531234 LOC106563028 coding upstream 81918 86235239 ~ 86287517 (-)
LOC110531245 LOC106562987 coding upstream 145719 86299040 ~ 86349770 (-)
LOC110532855 LOC106562987 coding upstream 200359 86353680 ~ 86402164 (-)
LOC118966040 LOC106592896 coding upstream 449001 86602322 ~ 86650167 (-)
G97048 NA non-coding downstream 15480 86069626 ~ 86135990 (-)
G97062 NA non-coding downstream 47452 86102342 ~ 86104018 (-)
G97053 NA non-coding downstream 74819 86073660 ~ 86076651 (-)
G96493 NA non-coding downstream 84781 86066070 ~ 86066689 (-)
G96491 NA non-coding downstream 96245 86054992 ~ 86055225 (-)
G97086 NA non-coding upstream 8833 86162154 ~ 86163303 (-)
G97087 NA non-coding upstream 9003 86162324 ~ 86162985 (-)
G97105 NA non-coding upstream 60675 86213996 ~ 86214266 (-)
G97103 NA non-coding upstream 62227 86215548 ~ 86216868 (-)
G97106 NA non-coding upstream 65332 86218653 ~ 86219424 (-)
G97047 LOC106577388 other downstream 131 86146009 ~ 86153321 (-)
G96002 NA other downstream 799704 85346858 ~ 85351766 (-)
G95784 NA other downstream 992157 85157742 ~ 85159313 (-)
G97176 NA other upstream 239240 86392561 ~ 86393089 (-)
G97251 NA other upstream 413156 86566477 ~ 86623311 (-)
G97308 NA other upstream 633736 86787057 ~ 86788052 (-)
G97535 NA other upstream 1141036 87294357 ~ 87294999 (-)
LOC110531505 LOC106597820 other upstream 1759981 87911053 ~ 87919678 (-)
G95624 NA other downstream 1165737 84979733 ~ 84980272 (-)

Expression


Co-expression Network