RNA id: TU107200


Basic Information

Item Value
RNA id TU107200
length 1464
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G97047
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86146009 ~ 86153321 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAGTtgataaatgttttattgtttcaTCAGGAGTGAGTCCAGGGAGATAATATCCAGAGGTTTGAAACATAATTAACCATTGAAACACTTTACTGTCCTGGGTTTTACAGATTAGAATGTGCTACCCCCTAGTGGCAGGACTATGCCATAACCACCTGCTACGATTATACATCGTAGGATTACAGGCGGTGATCACATTCAGATTGTCAAATATCATAATGGGAAAATGCCAAAtagtaaacaaaacaaaaaaattagGGTAAATATTAATTTAACCAAGAGTTGTTTCACAAAAATATTAAGTTAAATCTAGAAACACTATAAGGACTATACATTATTTGCTGATTTTATTGTTCTGACTGAGCAACAATTTAACAGTTGAACAATGATCGTCATAGTAACTACTAGTGCATCAACTACCCATAACAATTCTCCATTCCATGGTAAGCATGGTAACCATCCAAACAGGGATAACCTGTTCAGAAGTGTGTAACATTAATGTTTAGGACACAGAGCTGCAGCAGTGAGTGTATCATGCCATGTTCATGTGCTATCAGAATGACCAGAAACtcaggtctaaaaaaaaaaataattgctgTAAAACGTATGAAGTTAAACCGTTCATATGGAACTTCCAAGTTGGATATTCCAGAGTTTCCTAAATTCTGAGTAGCACGTGAATGCAGCATCACAGACGTGAGTCTGGAGGTGTGGGTTCTGCATCCAAGTGCTGTTGCCGGGTTGGTTGCCGTGGCTGGGAGCGTAGTCAAGCGCTGAGGAAGGTGACGGCGgtgtccctctcctccaccagctCGGCTGCCGTGGCGTCCATCTTGCCTCGGGAGAAGTCGTTGATGGCCAACCCGTCCACAATCTTCCACTGCTTGTCCTGAGGAGAACAAAGACAGAAGAATAATGTATATTGAATAATAGGCCAAAGTGATCAACTTCCCACTGCAACAGGTAGTTGGTCGTAGACTACAGCACCTGTTTGTAGTCAATAGAAGCAGAGCTCTCTGGTTAAGAAGGTGATGACAGCTGATCTTAGAGCACAATTCTGATCTTTCGCCCAATCAGATAAGATCTTTcgccaataattgggcaaaagatcagaattgtgcTGACAATGTAAACGCAGCCTTAgtatagagagtagagagcaggTGTAGAGAGCAGAGTGTCAGGGATCTGTCTCACCTTGATGTGAACAGGGAATGAGTAGATGAGGTCTTCAGCGACACCATAGGAGTTACTGCTGGAGTAGACACCCATGGAGACAAACTCTCCCTGCAAACAcaagaggtcagaggttagggctACGTTCAGGAACCATTAACCTAAAGACAGGCTGCTCCACACTGTGTTCAGGAGCCATTAACCTAAAGACAGGCTGCTCCACCCTCTTCCCAAAGTGTGCAACTGCACACATCTCATAAATGTAACAATGGCCTCCAGCCAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107205 lncRNA downstream 15480 86069626 ~ 86135990 (-) True G97048
TU107220 lncRNA downstream 47452 86102342 ~ 86104018 (-) True G97062
TU107210 lncRNA downstream 74819 86073660 ~ 86076651 (-) True G97053
TU106535 lncRNA downstream 84781 86066070 ~ 86066689 (-) True G96493
TU106533 lncRNA downstream 96245 86054992 ~ 86055225 (-) True G96491
TU107249 lncRNA upstream 8833 86162154 ~ 86163303 (-) True G97086
TU107250 lncRNA upstream 9003 86162324 ~ 86162985 (-) True G97087
TU107282 lncRNA upstream 60675 86213996 ~ 86214266 (-) True G97105
TU107271 lncRNA upstream 62227 86215548 ~ 86216868 (-) False G97103
TU107272 lncRNA upstream 62227 86215548 ~ 86216868 (-) False G97103
XM_036987706.1 mRNA downstream 104294 85891577 ~ 86047176 (-) False LOC110531925
XM_036987761.1 mRNA upstream 68875 86222196 ~ 86223952 (-) True LOC110513354
XM_036987774.1 mRNA upstream 81918 86235239 ~ 86287517 (-) True LOC110531234
XM_036987797.1 mRNA upstream 145719 86299040 ~ 86349770 (-) True LOC110531245
XM_036987786.1 mRNA upstream 200359 86353680 ~ 86402164 (-) True LOC110532855
XM_036987939.1 mRNA upstream 449001 86602322 ~ 86650143 (-) False LOC118966040
TU107204 other downstream 131 86146009 ~ 86151339 (-) False G97047
TU105927 other downstream 799704 85346858 ~ 85351766 (-) False G96002
TU105929 other downstream 799704 85346858 ~ 85351766 (-) True G96002
TU105902 other downstream 890938 85258396 ~ 85260532 (-) True LOC110510598
TU105901 other downstream 899153 85249209 ~ 85252317 (-) False LOC110510598
TU107372 other upstream 239240 86392561 ~ 86393089 (-) True G97176
TU107498 other upstream 413156 86566477 ~ 86623311 (-) True G97251
TU107596 other upstream 633736 86787057 ~ 86788052 (-) True G97308
TU107871 other upstream 1141036 87294357 ~ 87294999 (-) True G97535
TU108928 other upstream 1759981 87913302 ~ 87915900 (-) False LOC110531505

Expression Profile