RNA id: TU107220


Basic Information

Item Value
RNA id TU107220
length 476
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G97062
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86102342 ~ 86104018 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaagaaagaatgaaagaatgaaagaaagagaatgaaagaaagacaatgaaagaaagagaatgaaagaatgaaagaaagaattaaagaatgaaagaaagcgaatgaaagaaagagaatgaaagaaagagaaagaaagaatgaaagaatgaaagaaagagaatgaaagaaagagaaagaaagaatgaaagagaggACGGCAGCTAATTAAAATGTTTCTGTGACGGGTTGCGATGGGGCAGTGTCAGTCAGACTGTGGCAGGTCTTTAGTTTAACCCTGTAATTTGCCACGTAACCCCGGGTGACGGGACCCTTCTGACAAACAGATGGGTGAGATCACTACCCCCCGTGGGAGAGGgcggtgtgtgttttgtgttaaCCCCTTTCCTACCTAGAAGCAACATCCTCCACATCAACAGACagccacggtgtgtgtgtgtttgtgagtggttgtgttcaggtaaggtgtgtgtttgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107210 lncRNA downstream 25691 86073660 ~ 86076651 (-) True G97053
TU106535 lncRNA downstream 35653 86066070 ~ 86066689 (-) True G96493
TU106533 lncRNA downstream 47117 86054992 ~ 86055225 (-) True G96491
TU106492 lncRNA downstream 159310 85941941 ~ 85943032 (-) True G96454
TU106487 lncRNA downstream 164887 85937175 ~ 85937455 (-) True G96452
TU107200 lncRNA upstream 47452 86151470 ~ 86153321 (-) True G97047
TU107249 lncRNA upstream 58136 86162154 ~ 86163303 (-) True G97086
TU107250 lncRNA upstream 58306 86162324 ~ 86162985 (-) True G97087
TU107282 lncRNA upstream 109978 86213996 ~ 86214266 (-) True G97105
TU107271 lncRNA upstream 111530 86215548 ~ 86216868 (-) False G97103
XM_036987706.1 mRNA downstream 55166 85891577 ~ 86047176 (-) False LOC110531925
XM_036987761.1 mRNA upstream 118178 86222196 ~ 86223952 (-) True LOC110513354
XM_036987774.1 mRNA upstream 131221 86235239 ~ 86287517 (-) True LOC110531234
XM_036987797.1 mRNA upstream 195022 86299040 ~ 86349770 (-) True LOC110531245
XM_036987786.1 mRNA upstream 249662 86353680 ~ 86402164 (-) True LOC110532855
XM_036987939.1 mRNA upstream 498304 86602322 ~ 86650143 (-) False LOC118966040
TU105927 other downstream 750576 85346858 ~ 85351766 (-) False G96002
TU105929 other downstream 750576 85346858 ~ 85351766 (-) True G96002
TU105902 other downstream 841810 85258396 ~ 85260532 (-) True LOC110510598
TU105901 other downstream 850025 85249209 ~ 85252317 (-) False LOC110510598
TU105884 other downstream 877192 85218393 ~ 85225150 (-) True LOC110510599
TU107204 other upstream 41991 86146009 ~ 86151339 (-) False G97047
TU107372 other upstream 288543 86392561 ~ 86393089 (-) True G97176
TU107498 other upstream 462459 86566477 ~ 86623311 (-) True G97251
TU107596 other upstream 683039 86787057 ~ 86788052 (-) True G97308
TU107871 other upstream 1190339 87294357 ~ 87294999 (-) True G97535

Expression Profile