RNA id: TU105884


Basic Information

Item Value
RNA id TU105884
length 984
RNA type TUCP
GC content 0.38
exon number 7
gene id LOC110510599
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 85213382 ~ 85244441 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTATTAAATCTAGTGACCCtgcctctctctaactctcccccaGTGAGCGGAAGGCGAGGCGTCTGTACTTCTCTGACCTGAGGGAGAGGGTGTTGCGTTCTGAGTGTCGTCAGCAGGAGGAGGTGTACTTCCAGCTGGCTGGGTATGCTCTTCAAGCTGACCTGGAGGACCATCCCCTGCCTGGGAAGAACCAGGGAGGTACCCGCTACTTCCAACCCAAAGAGTACTTCCCTCCCTGGaTTGTGGCGAAGCGTGGGGTGGACTACCTGCTCTGTCACGGTCCCAAGGTACACAAGGAGCTATGGGGCATGACGCCACGTGATGCGGTACTCCACTTCATCAAAGAGGCCTGTCGTCTCGAGGACGTCCCCGTCACCTTCTACAGGCTACAGAAGGacaagaaagaagagagaggcacAGCTCTGCTGGGGCTGACCCTCAGAGGAATGCAGCtttatcagGAGGCGGACAACATCCGCCAGCTTCTCTATGATTTCCCCTGGTCCAACGTGGGACGACTCACCTTCCTGGGAAAGAAATTTGAGATCCAGCCAGATGGTTTGCCGTCGGCCAGGAAGCTGGTCTACTACACTGGGTCTCCGTTTCGCTCGCGCCACCTCCTCCTGCACCTCAGCAACAGCCACCGACTCTACCTCAGTCTCCAGCCTGCCCTCAAACACCTCCGACAGCTGGAGGACAGCGAGGAGAAGAAGCGCTACAGGGAGTCGTACATCAGTGATGACCTGGATCTAGACCATCCAGGGGGCAGCGAGGGGGGCAGCCCCGGCCTGTCCCGACACTCTACCTCCAGCTCGGGCATCGAGGCAGACCGCGATGCGACACGGCAACACAGCAGCATCTCCATGGAGATGGCGTCCATGGAGGAGGAGACTGAGctgaggaagaggatggagaAGTGTTTCAGTTCGGCAGCGAGTCACGGGAGTTCTCACACTTCGGGCGTGGACACGGGCAGCAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105885 lncRNA downstream 187 85218005 ~ 85218206 (-) True G95968
TU105881 lncRNA downstream 5329 85212864 ~ 85213064 (-) True G95965
TU105710 lncRNA downstream 6635 85211546 ~ 85211758 (-) True G95808
TU105705 lncRNA downstream 21058 85197124 ~ 85197335 (-) True G95803
TU105704 lncRNA downstream 23585 85194345 ~ 85194808 (-) True G95802
TU105890 lncRNA upstream 2503 85227653 ~ 85228122 (-) True G95973
TU105899 lncRNA upstream 22190 85247340 ~ 85248832 (-) False LOC110510598
TU105926 lncRNA upstream 121708 85346858 ~ 85351766 (-) False G96002
TU105928 lncRNA upstream 121708 85346858 ~ 85351766 (-) False G96002
TU106016 lncRNA upstream 227282 85452432 ~ 85456627 (-) True G96062
XM_036987592.1 mRNA downstream 11124 85186876 ~ 85207269 (-) True LOC110516660
XM_036987589.1 mRNA downstream 11131 85182591 ~ 85207262 (-) False LOC110516660
XM_036987580.1 mRNA downstream 11140 85171944 ~ 85207253 (-) False LOC110516660
XM_036987587.1 mRNA downstream 11140 85171944 ~ 85207253 (-) False LOC110516660
XM_036989976.1 mRNA downstream 46538 85161750 ~ 85171855 (-) True LOC118966724
XM_036987635.1 mRNA upstream 22188 85247338 ~ 85299640 (-) False LOC110510598
XM_036987640.1 mRNA upstream 22188 85247338 ~ 85299640 (-) False LOC110510598
XM_036987644.1 mRNA upstream 22188 85247338 ~ 85299641 (-) False LOC110510598
XM_036987651.1 mRNA upstream 133072 85358222 ~ 85624715 (-) False LOC110519057
XM_036987654.1 mRNA upstream 133072 85358222 ~ 85624716 (-) False LOC110519057
TU105686 other downstream 59080 85157742 ~ 85159313 (-) True G95784
TU105500 other downstream 238121 84979733 ~ 84980272 (-) True G95624
TU105357 other downstream 488970 84728864 ~ 84729423 (-) True G95494
TU104684 other downstream 924810 84291760 ~ 84293583 (-) False LOC110532813
TU104675 other downstream 925770 84291760 ~ 84292623 (-) False LOC110532813
TU105901 other upstream 24059 85249209 ~ 85252317 (-) False LOC110510598
TU105902 other upstream 33246 85258396 ~ 85260532 (-) True LOC110510598
TU105927 other upstream 121708 85346858 ~ 85351766 (-) False G96002
TU105929 other upstream 121708 85346858 ~ 85351766 (-) True G96002
TU107204 other upstream 920859 86146009 ~ 86151339 (-) False G97047

Expression Profile