RNA id: XM_036987587.1


Basic Information

Item Value
RNA id XM_036987587.1
length 5899
RNA type mRNA
GC content 0.53
exon number 30
gene id LOC110516660
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 85171944 ~ 85207269 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTTGGCAACGGTGAGTGACGTATCAGGAAGTTTACATACCGACAAGAAACGTGAGGTCATGTATGAATCTCTGTGAACACATTGAAGTCGGCTTTTGAAATGTCTTCTATTTTAATCAATGCCCTTTTATCAAGTTGCCATGATCCGGATACTTTGTTTAACACGTTGTGCTGGCCAACTGACTCGTGGCCGGACGCAGAAAGAGTAGAGGCACTGACAACGTTTATTGATGGAATTGGTAAACTACCCCAGTCTGACACATCTGACGATGGCGACAAAGTTGCCTTTTCAATTGCAAAAAGAGACATCTTTCTACGAAAAGTTGAATCGATCATTTGGACACAATGTTTACCACTTCTCTTGAAAGTCTCTAACGGAGACGGGGCGTGCAAAGGTAAACGTGTGCCAGATGGAAGGGCTGAAATCACCATCGCTGTGTGCAGGCTTCTTTCTGTCTGCATCAACACACTGTGTGACACGGCCGTTTCGGGGCAAGTCGCCCGCGCTGTCCTGCCATCCTTCCAGCTGCCAGacggggagacagaggaagagcttCCCGGCCAGGGTGAGGGGCGGCTGGGTATCGACGTGGCTATCGAAGCCATGTCAGTCATCCTACCCGCTGTCTCATCCAACGAAGAATTGACCACGTCGATCCTCTCATCTGCCCTGTCCTGTATCAAGACGTTACCGGATGCTCTGGTCTCCAAAATCACCGTTCGGCTTATTTTCACTCTCCTCAACTGCTACAGCGAGGATGGGATAGCGAGTAAACTCCGGTTCATTTTAGAGGATTTGTGTAGCTGGCACAAGAGTGACAGCTCAAACACGGACTCACCTGTGGTGACAGAACGCGCCTTGCTGTGTTTAACAACTCTCTCGGACTATCTCTTCTCTCCGGCTAAAGTACAGCAACACACCCTTCCTCAAAGTCTGAGCTATACTCGACCTGACCCTCGTTGTTCTCTGCAGTTCTGGAGGATTCTACAAGATGGACTGACGCACAAAGACAACGTGTCCCGGAAGCGGGCGTTGTACCTGCTGAAAAGGTGTGTCGCTCTGTCAGAGGATGAGGCGGTTGAGTTTCCAAGCAGTTCAGTGTCAAGTGAAGATAATGAGGAGATCATATTCAGATGGGCCCCAGACAGATGCAAGCTGCTCAGAGAGTTCTGGGAGGACTATGCCTTGGTTATGGAGACACTGGAGGAGAACCAGATTCACGTGGTCCGCCCTGTGCTCAACAGAATCCATACGTTGATCCAAACAGCAGCCAATGATAGTCAAgGCGTCAGTCTGTTCCACCCGTCATGGCTGCTGGGTGTGTACCAGCGTATGTTCCACAGTGAGAACAAGTCCGtcatgagagagggagtggatcACCTACTGGAACTCCAGGTGCTCCGACGCCCTGCCTTCGCCCTGGCCTTCTCACAGTTCATTCTGGGTCCTTTCATGGATGTGATGTCTGAAAGCTCCCTCTTTCACAGGACTGCAGGACAGAGTGTAGGAGAGTGTCCTGAGCTGGGAGTCAAGCTGCAGGTCTTCATGGTCACGTTCTTCAGCAGCCTGCCACAGGAGAACAGAGgtcctgtgttgctgCAGCTTGTCCAGCGGCTAGGTTCTCAACACTGGTGTGCTGtccccatcctcttcctctctcggGCCCTGTCCCACCTTCCTCCCTGCCCTCTCCTGGGCCCCGAAGGCCTGCAAGCTCTCAGGGAGGTGCTCCGCTGCACTATGATCACCCACCAGGTGCTACTGAGAGGAGCTGCCCAGTGTTTCCTGCTGAACAGTGCCCTCTCCCTGACAGATGTGACCTTAGTGACATTGGATGATGTGTTTAGTTTGCTGGTGCATTTCAGAGCAGACGAGTCTCTACGTAGAGGAACACCGCTCTGGAATCAGCtgtgtgactggctggctgacagtGAAGGCAGCTTCAGGCCCTGTGTCAGAGAATCAGCTGAtggtaccagtaccagtacctctccagagagagagactgtgagaggcTACGTCCAACACCAAATGGAGCTCTTCCTCAGAGTCCCGGCTAGCACAGaccagacagacagtgtcccAGACCCAGGAGAGGCGGAGCTGCTAGCCAAGGCCATCCTACTGTGTGTTGACATAGAGGGGAGGACTCCGAGGTCTGGAGGAGAGCAGACTACTGGTGTCAGCGGTGGGATGGACTCGCTCTTACGCCCCCTACTGGACACACTGAGCAGGCTCCACACTAATGTCTACCTGCCGCTACGCAAGACTGACAAGAGCCTGCAGCTGCTGCTACGACTACTGCAGCTCACACCAGCCAGACACACCCCTGCTGCATTACTGCAGCTCACACCAGCCAGACACACCCCTGCTGCAGTACTGCAGCTCACACCAGCCAGACACACCCCTGCTGCAGTAGAGAAAGAACAAGACAGTGTGACGGTCTCCATGGAAACGCTGGTTCTGGGCGTGGTGGAGCCCATTCAGGAGTTTATCCTCCGAAGACTGAGTGGAGAACTACAGGAGCTATGTGATGTAGAGCGTGCTGAGCTCTACCTGTCAGTGCTGAAGGAGGTGGTGCTGATGTACAGTGTGTTAGAGTGGAACCACTCCAAGGTACAGGAGGCCTATTTCCCCAGACTCCTCAGATACGTCCTGAGGACCCTAGAAGCTGACCAGATCCCCTCTGTGGCGGGTCAGGTGTCCAGGGCGGTTGCCATGGCGTCGTTGGCCATGACCTGTGAGGTTGCAGCGTTGGGAGTGTTCAAcctccaatcagagaccacgatTCTACTGGTCCATCTGTCTAGCTACTTCTACTCCCCTGCTCCACCCccagcccctcctctctctctggtcaactTCAACCAGACCCTGCTGAAACCTCCAACTGCAGCTCAGTCAACAGGTGTTTCAGAGCAGGGTCCTCTCCTCAAGGACTGGGGCCGTATGGCAGCTCATTTCATCCGGGACCAGTGGACGTGTCTGGGATACGGGAGGAGAATAGGCCCACCCGGGCCCCTGGAGCTCCCCAGGGCGTCAGGGTCCCTCCAGGCTGCTATAGAGGCTCTGTCTCTGCTGCCCAGTGGCCTGGTACTGCCTGTACTGGACTTCATGGCCTCCATGTTGCCACAGgtGGCGCTGTCTGAGGAGGCCCTGTGTGTAGAGGCTGTGACTGTCTCCTGGAAGCTGGTGCTGGGACTGAGCAGTAACCCTCATGACTTCTGGCCCACCCTGCAGGGCTTTGTGACCATGGCCTTTCACCACAGCCTGCTGGAGTTAACAGAGGAGCAGGCACCTGGGCTCACTGTTACTCTACAACAGATAGCCATTGAGTTGATGGAACTCTCCCAGGCCAAGACTGGTGTATTCAACGTTCTGATCCAACACTGCTGCCACACCTGGCTGCCCACTGGCCCAGGAAGTGAAGGCGAGAGCCAATCAGATGCCATGTTCTCCAGTGCCCTACTGCACCTTGACATCCTGGCTGAGGCATGTGTGTATGGACCTGTGTTCAGGAGGGACCAAAGGCTGATCCAGGAGGTTCAGGTCTATGTGGAGAGGCTTGGAGAGGAGTGTGCTGCTAACACTGCAGTCCCCAGTGATAACCGGGATGACCAGTTCCCACGTGTGTGTGTCGTGGCGTTCCTCAGCCGCCTCCAGCCCTCCAATCAGCTGCATGAGAGACTGATGGAAGAACTGGTTCTCTGCTTGCTTAAAAAGGATGAGGCCATATCGAAGTCAAAACAGCGTTACTATAGCAACTCCCTGCAGCATCGTGTCAAGAACAGGGTGTGGCAGACACTACTGATGCTGCTGCCCAAACTGAGagggGAGTTTGTAGGTACCGTTCTGGGTCGTGTGTTTGAGGCAGGTTTCGTCAGTAACCAGGCCTCAGTCAAGTACCTGATAGAGTGGAAGATGGTTCTAATCCTAGTCCAGTATCCTGAACACATAGACCGACTCTGGGCCTGCTTCAGTGTGGATCAAGAGAAGACCAAGACCAGTGTCTGTACCTTCCTGTCTGTGTTGGTCCACCTCAACATCATCATGCCTCAACTCAAGGAGAAGGCAGTACAGTGGCGTAAGGCCCTGGATGTTATACTCCAGTGGTGTTTCAGCCATAACTTCAGTGTTCGTCTGTACGCCCTGCTGGCCCTGAAGAGGGTGTGGGGTCTGGAGGGGGATGGGCTCGGGGGGTTGGCCACCGTCGTTAAGGCCTGTCTGCACCAGGCTGAGGCTATGCAGAGTACTGGAAATGCCAATAAGAACTGGACCAGGATCCAGGACCACTTCTTCTTTGGTGGCTTTCATCCTGTTAGAGACTATAGTGTGGAATCCATATTCTACACATTCCCCAGCCTATCAGAGGTGTTTGAGGACGAGTGGATTCCGCCCTGGAAGTTTGAGAAGTTGGTGGACTTCTCCCAGAGTGCATCTCTCCCGTTGAGGAACCCTGTCCCTGACCTGAGCCAGATTCAGCCTGGAGACTGGATCCAGCAGGATAAAGGGGATCAGGATGGTGAGGAGCGCTGGGCCGAGGTCCAGAAGAAGATGACCCCCTGGAGGTTGGGGATCCAGGAACAGGAGCCAGAGCTGGGTCTGGTGCCCCAGCAGAGAGCAGCACGCCTGGGCAAGCTGCACAGTGCCCTCCTGGTGGTTGCCTCTCTCATAGACAAGCCCACCAACCTGGGAGgtctGTGTAGGACGTGTGAGATCTTTGGGGCCAGTGCTCTGGTATTGGACAGTCTTCGCCACGTCAGTGATAAACACTTCCAGGCCCTGAGTGTCTCCTCTGAGCTATGGCTCCCCCTACTGgagGTGAAGCCCGTAGAACTAGCTGACTTCTTGCAGCTGAAGAAGAGAGAGGGCTACTGCATTGTGGGAGTGGAGCAGACAGCCAATAGTCAGAGTCTAAAGGACTACAAGTTCCCTGAGAAGACTCTGTTACTGCTGGGTAATGAGCGTGAGGGTATCCCAGCTAACCTGCTCCAGctgctggatgtgtgtgtggagatcCCTCAGCAAGGTGTCATCCGTTCCCTCAACGTACACGTGAGCGCCGCCCTGCTGGTGTGGGAGTACACCCGCCAGTACCTGCCCACTACTGGAGTGAAGTCAGACTGAAATAGGGAGAGATGACCTGGATGATAAGAAACAAACGTTTTCACTCTGTTGTAAaacgttttttaaatgttttccatTGCGTGCACTAATGAACATGGCCCTAGTGTGGGGGTAAACCCACCAGTACCTAACCCTACTGCCCCCGCTGCGGAGTAGGGTTAAGTTGCCCCTTTACATTGTAGTCAttaagcagatgcttttatccagagaaacttacagtagtgagtacatgcatgttcatactggtcccccatgggaatcgaacccacaactctgGTGTTACAAGCATcacactctaccaactgagctacatggggcctttccccactaatggttaaggttagaaggGGACGCTGATCCTATATCTGTACCTACCGACAACTGTACCTACAGCCCCCACAACTGTACCTTTAACCCATTTTAAAATGCAGCCTTAACCATCCAATGGGCCATAGATCTAGAGAATGGATGTTAGTCTTACAAGTAGTGACTTGTTATTAGACCTAGAACCCATCTCAGATCCATTGGAGGGTATTCCGCTTTAGCCGTGGCTCGATATTACATTAGAATATTCCAATGCGTTTGTCGTTTGGACAGGGTCATGTTTCCAAGTGCTTTCCCAGTAAAGCAGCAGACACTTGATTTTCCCCGAGTCTCTGTTTTTTCTGTGTGGTATTAAATATTGAACAATGCTTTTTTTGGAGTGGAGAAATTGTTGGAAAGTAATGCATCTTTTTaattaaacaaataaaacaattatttcGTAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105689 lncRNA downstream 4534 85167121 ~ 85167410 (-) True G95787
TU105687 lncRNA downstream 16021 85154592 ~ 85155923 (-) True G95785
TU105681 lncRNA downstream 34682 85136987 ~ 85137262 (-) True G95779
TU105678 lncRNA downstream 42891 85128454 ~ 85129053 (-) True G95776
TU105676 lncRNA downstream 46188 85124262 ~ 85125756 (-) True G95774
TU105710 lncRNA upstream 4293 85211546 ~ 85211758 (-) True G95808
TU105881 lncRNA upstream 5611 85212864 ~ 85213064 (-) True G95965
TU105885 lncRNA upstream 10752 85218005 ~ 85218206 (-) True G95968
TU105890 lncRNA upstream 20400 85227653 ~ 85228122 (-) True G95973
TU105899 lncRNA upstream 40087 85247340 ~ 85248832 (-) False LOC110510598
XM_036989976.1 mRNA downstream 89 85161750 ~ 85171855 (-) True LOC118966724
XM_036987540.1 mRNA downstream 390065 84760098 ~ 84781879 (-) True LOC110522386
XM_036989962.1 mRNA downstream 840244 84292293 ~ 84331700 (-) False LOC110532813
XM_036987419.1 mRNA downstream 914995 84157529 ~ 84256949 (-) False LOC110531033
XM_036987414.1 mRNA downstream 914996 84157529 ~ 84256948 (-) False LOC110531033
XM_036987628.1 mRNA upstream 6129 85213382 ~ 85239583 (-) False LOC110510599
XM_036987631.1 mRNA upstream 6129 85213382 ~ 85244440 (-) False LOC110510599
XM_036987612.1 mRNA upstream 6129 85213382 ~ 85244441 (-) False LOC110510599
XM_036987622.1 mRNA upstream 6129 85213382 ~ 85244441 (-) False LOC110510599
XR_005053210.1 mRNA upstream 7641 85214894 ~ 85244440 (-) False LOC110510599
TU105686 other downstream 12631 85157742 ~ 85159313 (-) True G95784
TU105500 other downstream 191672 84979733 ~ 84980272 (-) True G95624
TU105357 other downstream 442521 84728864 ~ 84729423 (-) True G95494
TU104684 other downstream 878361 84291760 ~ 84293583 (-) False LOC110532813
TU104675 other downstream 879321 84291760 ~ 84292623 (-) False LOC110532813
TU105884 other upstream 11140 85218393 ~ 85225150 (-) True LOC110510599
TU105901 other upstream 41956 85249209 ~ 85252317 (-) False LOC110510598
TU105902 other upstream 51143 85258396 ~ 85260532 (-) True LOC110510598
TU105927 other upstream 139605 85346858 ~ 85351766 (-) False G96002
TU105929 other upstream 139605 85346858 ~ 85351766 (-) True G96002

Expression Profile