RNA id: XM_036987414.1


Basic Information

Item Value
RNA id XM_036987414.1
length 5643
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110531033
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84157529 ~ 84256949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCGACAAGAGGAGAAAGTTCACCGGCGATGCTCCGTTCGTTTCCCTCTGTCTGCGGGTGGTGCTGAACGTTTGCACGCACGCGGACCGGGCGGTGGGGGCTGGGATACGGTACGTGTGAGAGAACATAAAGAGAGAACAGGACTTGACTAGCCTGTTTATTTTCCAAGCGGAAATTTCCACGTGTTTGCGACAGACACAAGAGGAAGAGTGAGAAGGATGAGGGGGGGAAGCCTGAGTTTCTTTTCGTGAAAGAATGAAAAATGTATAGGAAATAGGCCTGTCAACGAACAGAGACTGGATTTGTACGATTCTAAGCTATATCAAGGAAATAACTTACTTATTTCAACCAAGACACATCTGGAAATAGTCGTTCCTCGGACGTTCTCTGACAGAATTAGATTGAGAGatcgttcacagctttgtggaagttacctgtggcgttgATGTtaaggccaagGCTCCAGGTCAGTGGGTGTAGTGGAGTAGAGGCATCCCAGGGAGGAGTGAGATTCTGGGGATGAGAggtacctcctccctccctgtctcccgcAGAGAATCAGGAGAACACTGGGACTCACTAACAGagtgTGTTGGGTGTATGTCTGGTGTTGTCCAGGTAACATGGCTCTGGTTCAGACCCTGCCTGTGTCTGTGACTGACCACCCCAAGCCTCCCACAAGCCTCCATATCGTCACCCTCTCCCCTGTCGTCGGAGGGCCCTGTGACCCCTTTGTCCCCGGAGCCACCATGGGCTCCGTCAGCAGCCTCATCTCTGGCCGGACCCATCAGGAGCAGCGACACTGCCGGGCTGCCAGAGAGTTCAGcACTAAGCCACGCCGTAACAACCCAACTACCAATTGTTTCAAGCTCCAGGGTGATAGCAACACCCTGCCCAGCGGGAGCTCCCTGGAACAACTACTGATCATCAACAACCAGACCCAGCTCCAGCCCACCAAGCTCCAGCCGCCGCCACTGCCCACAAAGAAGCAGCCTCGGGCGGGTAACTCTGCTGGGGGGGCTGGGTGTGTggctggaggtggtggtggtagtggagggaatGGGAACTATGGGTTTGTGAGGGAGGAGGTAGTGACTGTAGGAGACCAGAATGATAACCATGTGGTGACGGTGGGGAGTCCGTGTAGCGACTCGGAGGAGCAGAGGAATAACCGAGGTCTCAACGGGAATATCAGCGGGCCGCCGCCCAAACTCATCCCTGTGTCGGGAAAACTGGAGAAGAACATGGAGAAGATTCTGATCCGTCCCACCGCGTTCAAACCGGTGGTCCCGAAGAACCGCCACTCAGTACAATACCTCTCCCCGAGACCAGGGGGCAACCTCTCTGAGAGCCAAGGCAGCCTCAACCTCCTCTTGCCCCTGTCGATCAATGGGAATAATGGAAATACAGTGGTCAATAACGTGAATACCGTGTTCAATAACGTGGTCAATGGCACTGGGAGCTACGGGAACGTTGTACCTCTGGTCGGCTCGTCTTCTTCCTCAGATAGCAAGAGGAACTCATACAGCGGAGGACGCAATGCTCGCAACAGCCATTCCTGCTCCATGTCAGACTCTGGCCGTAACTCCCTGTCCAGCCTGCCCACCCACAGCAGCAATGGCTACAGCCTGGCCAATAGCGAGGCCTCCGGGTCGGGTTCAGGGTCTGGGGGGTCCAGGGTGGGCCCGGATCCTGGGAGAACCACCACCACAAATGGAGGGTCGGGGATCAACGGAGGTCACGCCCACTCTACCTCCCACGGTCACTCAAACTCGGACAGCGGGCGGTCGTCGACCAGTAAGAGCACAGGGTCGCTGAGTGGGCGAGGCCAGCCCCTGTCGGACAGCGGGTCATGTGGGCGCTCGCCCCCGACCCTGGAGGGTTATGAGGGGGTggtgagggagctggaggagaagTTGAGGGAGAGAGACCTGGAGCTGCAGCAACTCAGAGAGAACCTGGACGAGAACGAGGCCGCCATCTGTCAGgtatacGAGGAGAAGCAGCTTCGCTGTGAGAGAGAGCTGGAAGAGCTGAGACAGAGCTGTTCCTCTGAGATGAAACAGGCTTCACAGAAGGCCCAGAGAGTACAACAGGCCTTACAGCTACAGGTGTTCCAACTGCAGCAGGAGAAGAAGAAGCTCCAGGAGGacttctcctctctgctgcaggacAGGGAAGAGTTGGAGAGGAGGTGTGCCTCTATACAGAGAGAGCAGACCCAGCTGGGACCACGCCTAGAAGAGACCAAGTGGGAGgtgtGTCAGAAATCAGGTGAGATCTCCCTTTTGAAACAGCAACTGAAGGAGAGCCAGTCAGAGCTGAGCCAGAAGGGCGGGGAGCTGGTGGTCCTGAAGTCCCAGTTGAGAGAGGTCAGGTCCGATCTCCAGAACTGCCAGGCTACGACCCAGGAGGCTGGGTCGGCACTACGAACACGCTCCCTGGAGCTGGAGGTCTGCGAGAATGAGCTCCAGCGCAGGAAGAGCGAAGCCGAGCTGCTCCGCGAGAAAGTTGGACGCTTGGAGGAAGAGTTGGCGCACCTCCGAGATGCCCTGGCCAATCAGGGAGGAGGTTATATTCCTGGAGGCCAGGCACCAGCCACTAAGGGCCAATGTATGAGCCTGCCCCTCCCCCAGGGGCGTGGGGGTGTGAGGGGTGGAAGGGGGGGCCTCTGCCCCTCTGTGGGGTACCGAGAGGCGGAGGAGGGGAGGCTGGGTTGGGGAGGGGAGAGTGATGAGACCAAGGCTCAGAGGCAGAGTGCTGAAGCTGTGCTGGGACTCAGGCAACAGGTGGAGAGGCTGAGGGCAGAGCTGATGTATGAGAggaggagcagtgaggagcagcTGGGAGGatttgaggaggagaggagggtctggcaGGAGGAGAAGGAAAAGGTGATCCGCTACCAGAAGCAGCTGCAGCAGAACTACATCCAGATGTACAGGAGGAACAGAGATCTGGAGAGGGTGATGAGAGAGCTCAGTCTAGAGCTGGAGAACAGAGATGTAGAGGACTACGACGTCCACAGCGGCAGCAACGACATCCACTTCGAGGAGATCGCCGCTACTGAGATCTAAAGGGACCATACAAGGGTGTCCTCTCGCCCCAGTGAGATTTAGAGACCAGACAGGGGCGTTGTCTAACCCCAGTGAGATTTAGAGACCAGACAGGGGCGTTGCCTAACCCCAGTGAGATTTAGAGACCAGACAGGGGCGTTGCCTAACCCCAGTGAGATTTAGAGACCAGACAGGGGCGTTGTCTAACCCCAGTGAGATTTAGAGACCAGACAGGGGCGTTGCCTAACCCCAGTGAGATTTAGAGACCAGACAGGGATTTGTCATACCCCAGTGAAATTTAGAGACCAGATAGGGAGTTGTATAACCCCAGTGTCCACTCGCTCCCATGACAATTAGTACCAGCACCCTGATTTGATCTGATTTCCCCATCACTGCTACTGAGAGGTCTGcatccaaatggaaccctattcgctatgtagtgcacttattttggCTAGAGAACAGGTTACCGTTTTAAATTTGCATCCAGACTACAGAGGGTGTACCTGGACTTACTCCCCTAACCACAGTACCAGCACTCTTTACTTCTCTACACTCTTAGGAAAAgatgtgctatctagaacctaaaagggttctcatctgttcccataggataaccctttgaataactagttttggttccagatagaaccctttagGTTCCATGCAGAAGCtcaaaccaaaaagggttcccccatggggacagccaaagtATAGTTTTGGAACCCTTTTCTCTAAGTGTGTATGCTGTCATGGACAGGGAGCATCTCTGTCTCAGGGTTGAGTTACTCCACTAGACACTGGGATGCACCCTCCTCTAGGGCCTCACAGGAACAGCTGACTGACTACCTGCAGTCAGAAAGGACTCCATCACTTCGCCATTCGGACTTGAAAGAAGTTTAGGGTGTATCTCAACAGTTTAAAGTGGTTTCCTTTCCAGATTGAGATTCACCCTCAGACCAACACATCCTCCTTGCCTTCTCACATGGGTTTGATTGCCCAGCTATAGTACCAGCACTCTATGGGATGTATACTATGACTTTTGACTTGAGAAACAAGCAGGCATCACTCAAACCTTGCTCAAATCAGGGCATTGAAAGCAATGGGAGTCTCAGATAAAGGGCACAAATCTCAGATCAAGTCAAGTGAAATCATCTCTGTATATAGCACACAGGGGTGACTACCTGACGACCAGCACAtaattatgacatcacaataaagaTGGCATCACCCCTCGACTGTGTTTACATTTGTCCACAGGACTCAGAGCAAATGTTCCACTTTTACAATGTGTTCTcatgttatatatacagtattcaaTGGATCATCAACTCATCTAGAAGTAGCAATTTTAAGCGACAGCCTGGTCTTTTTTGAGTTACAGAAACACTGGAGTATTTTAATGGAGTGTATAACGATTCTTGGCACATAGCAAGTGCAACCATTCAGTTATCAACACCGGCTAAGACACAAACTAGGCTACACCAAGAGAATACATGGGATAATTTTGCACAAAAACTCATAATGCTCTTTTCAGTTCTGGACGTGACTGTTCTGTCTTTCTCATGTAGTTGACCCCTTTGTATGGACACAGAAGAGATAGAAGCATGTAGCAATAAGAGGGAGTGCAGCTTGGGAGATCTCACTCTCATATGAAAGGAAGAAAcaaatctctgtctctttcctgtTAACTAGCACAGACTTTCATATCAAAAGaagaaacaaacatttattggtTAAACCTAAAGCTGCCCGTCAAAGATATTGATGCTGCATCGGCTGCTGGGACTGTTATGGAGCCTTCTTGGATCCATGAGGTCAGGGGTCGTGGATCAGGAAGCCTTTGGTGGCACTTTCCCTGATGGTATCACAGTGAAAGCAACAAAACATCATTGTCAAACTGTACTGTAGGCCTCCCTCCCTtgtcctctctcacacactctggaCTGTGAATACTCTTCCGAGTATTACTAgacccacccccctctccctccgtcaCTCAAAAAAGCCAAATAACACTTCCTAGTCTTCCTGTCCCTGACTGTGAGACTCCCTCACTGACATGTAGATAATGTGGATGGCATGATTGCATGTCTTTCCCTGTCTGTCAGAGTCGGTCCAGATAATGTAGGGGTTTGTGCTGGACATTGCATGATAGATTAGCCTAAAGCATGACACCCCGGTCATTATGGAACTGTTACACTGGTTATATTGTTGCCTTGGGAGATCCAAGGGGGATTGGACTGAAATCTCTGGTCAACATATTGGCAGCCACTaggaaccatagaaatataattactataATGTAATTCTATGTCTATGCTGGTTCCTGAATAAATAAGGCAGTCTTCAGCTGTGCTTTCTCATAAGAATGGATTCAACTAGAGGTGTGATCTTTTGTATTACAGAGTAAAACAAAGTATATAAAAAAGATTCTTAAACAGATAAATAAAAATCAATATGAtctatgatgatgatgtgtaTATTTTTTATATAGCGCCTGAAGATATTTTGTGGTAACACCGGTACCATTGTGGGTTTAATATACAAAGTATAATAAAGATTTATATATATCTTTGCAGCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104318 lncRNA downstream 1998 84155166 ~ 84155531 (-) True G94608
TU104319 lncRNA downstream 5413 84151356 ~ 84152116 (-) True G94609
TU104526 lncRNA downstream 35519 84121792 ~ 84122010 (-) True G94790
TU104522 lncRNA downstream 39303 84117978 ~ 84118226 (-) True G94786
TU104519 lncRNA downstream 42382 84114779 ~ 84115147 (-) True G94783
TU104636 lncRNA upstream 29841 84286789 ~ 84286995 (-) True G94896
TU104640 lncRNA upstream 30808 84287756 ~ 84288189 (-) True G94900
TU104669 lncRNA upstream 34812 84291760 ~ 84292623 (-) False LOC110532813
TU104689 lncRNA upstream 34812 84291760 ~ 84292623 (-) False LOC110532813
TU104690 lncRNA upstream 34812 84291760 ~ 84301202 (-) False LOC110532813
XR_005053182.1 mRNA downstream 30697 84122691 ~ 84126832 (-) True LOC110531009
XR_002474617.2 mRNA downstream 46858 84097627 ~ 84110671 (-) False LOC110530947
XM_021614242.2 mRNA downstream 46858 84097629 ~ 84110671 (-) True LOC110530947
XM_021614226.2 mRNA downstream 109399 84031554 ~ 84048130 (-) False LOC110530927
LOC110532804 mRNA downstream 190024 83966165 ~ 83967505 (-) True LOC110532804
XM_036989962.1 mRNA upstream 35345 84292293 ~ 84331700 (-) False LOC110532813
XM_036987540.1 mRNA upstream 503150 84760098 ~ 84781879 (-) True LOC110522386
XM_036989976.1 mRNA upstream 904802 85161750 ~ 85171855 (-) True LOC118966724
XM_036987580.1 mRNA upstream 914996 85171944 ~ 85207253 (-) False LOC110516660
XM_036987587.1 mRNA upstream 914996 85171944 ~ 85207253 (-) False LOC110516660
TU104323 other downstream 355058 83801332 ~ 83802471 (-) True G94613
TU103830 other downstream 671592 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 1196207 82949614 ~ 82961322 (-) False LOC100301648
TU104675 other upstream 34812 84291760 ~ 84292623 (-) False LOC110532813
TU104684 other upstream 34812 84291760 ~ 84293583 (-) False LOC110532813
TU105357 other upstream 471916 84728864 ~ 84729423 (-) True G95494
TU105500 other upstream 722785 84979733 ~ 84980272 (-) True G95624
TU105686 other upstream 900794 85157742 ~ 85159313 (-) True G95784

Expression Profile