RNA id: TU104526


Basic Information

Item Value
RNA id TU104526
length 219
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G94790
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84121792 ~ 84122010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaaaattgtgaaattcacacacttatcaacagaacacatggttatccctactgcctatggtctggtggactcactaaacacaaatgcattgtttgtaaataatgtctgagtgttggagtgtgcccctggctatccgtaattttttgaaacaagaaaatggtgtcgTTTGCTTTGCTtattataaggaatttgaaattatttatacttttacgttTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104522 lncRNA downstream 3566 84117978 ~ 84118226 (-) True G94786
TU104519 lncRNA downstream 6645 84114779 ~ 84115147 (-) True G94783
TU104456 lncRNA downstream 8082 84111997 ~ 84113710 (-) True G94726
TU104443 lncRNA downstream 17062 84031597 ~ 84104730 (-) True LOC110530927
TU104319 lncRNA upstream 29346 84151356 ~ 84152116 (-) True G94609
TU104318 lncRNA upstream 33156 84155166 ~ 84155531 (-) True G94608
TU104536 lncRNA upstream 50519 84172529 ~ 84172741 (-) True G94800
TU104537 lncRNA upstream 51469 84173479 ~ 84173702 (-) True G94801
TU104539 lncRNA upstream 53873 84175883 ~ 84176091 (-) True G94803
XR_002474617.2 mRNA downstream 11121 84097627 ~ 84110671 (-) False LOC110530947
XM_021614242.2 mRNA downstream 11121 84097629 ~ 84110671 (-) True LOC110530947
XM_021614226.2 mRNA downstream 73662 84031554 ~ 84048130 (-) False LOC110530927
LOC110532804 mRNA downstream 154287 83966165 ~ 83967505 (-) True LOC110532804
XM_021614203.2 mRNA downstream 164834 83951057 ~ 83956958 (-) True si:ch211-198a12.6
XR_005053182.1 mRNA upstream 681 84122691 ~ 84126832 (-) True LOC110531009
XM_021614340.2 mRNA upstream 35519 84157529 ~ 84197300 (-) False LOC110531033
XM_021614317.2 mRNA upstream 35519 84157529 ~ 84256948 (-) False LOC110531033
XM_036987414.1 mRNA upstream 35519 84157529 ~ 84256948 (-) False LOC110531033
XM_036987419.1 mRNA upstream 35519 84157529 ~ 84256949 (-) False LOC110531033
TU104323 other downstream 319321 83801332 ~ 83802471 (-) True G94613
TU103830 other downstream 635855 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 1160470 82949614 ~ 82961322 (-) False LOC100301648
TU104308 other upstream 36813 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 36813 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 81477 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 169750 84291760 ~ 84292623 (-) False LOC110532813
TU104684 other upstream 169750 84291760 ~ 84293583 (-) False LOC110532813

Expression Profile