RNA id: XM_021614203.2


Basic Information

Item Value
RNA id XM_021614203.2
length 3956
RNA type mRNA
GC content 0.47
exon number 2
gene id si:ch211-198a12.6
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83951057 ~ 83956958 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACAATGCGTTGTTGGCGCCAGAAGATCAGTGGCGCAAGCTctacagaaagcgagagaggaaGACATTGCAGACAGTCGCAAGCAAGCATCCAGGAGAAATCGGTTGTGCAGAGCCCTTAAActttttgtttcatcataccCCGAAGACAAAGAGGTCTCTGACTGACTGAGAATCTAAGCACTACTACCACCAACCCTGTTGTGCTAGCCATACTAAGTGGATCTCTTCCTACCCCAAGTCCCTCTAAGCTTCCCGTCCGGCTCTAAAACGGAGGTCGTCGGGCTGGAGTGTGTTCTCATGGCTGATTCAGAGACTGAGTGTGACACACCCGGCCTTGACACGCTGGGGTCGGAGTGTGTCATTGCCCACAGCCAGGTTGACCTGCATTATGCGGCCGAGACGGAGATCATGACAGAGGAGAAACGTGGCCTGGAGCTGGAGATCCACGGGGCAGACCTGGCCAAGATCCAAGGGCTCACTGCCGTGGCCTGTGTGGACGCCATCGTCACAGAGACTGACCACGACTACGTGACCAAGCCGGACCACCACGGGGAGATCCAGTGCTTCACCATGGGGGGCGAGGGCAAAGGGGAGGCGCTGCTGGGAGAGGTGCTGCTAAAAACAGAGACTGAACATGTGGTTAAGGTGGAGTCGGACCACGTGGGCGGCGAGCTGACGGTGGAGTCCGAGAATGGTGTGGTTATCCACGAGGCCCACGGCCTGCAGTGCAACGAGTGCGGAGAGATCTTCGGCAGCATGGCCGACCTGCACCAGCACTTTGAGATCCACAAGGCCACCAACCCTTACATCTGCGTGCACTGTGGCGATAGCTTCGCTGTGGAGTCGAGCCTCAAGCAGCACATGAAGATCCACATGAAAGAGAAAGCGTATGCCACCACAGGTGTGGAGATGGTGGGAAAGGGGGTGATTGATGCTTTCAATCTAAAATCTCACCAGATGATCCACAGCCCGGAGAAGCCCCACCGTTGCTCGGAATGTGGCAAGAGCTTTGCGGCAGCCATCACCTTGCGGGAGCACATGAAGATGCACTCAGAGGATAAGCCGTATAAGTGTACCCAGTGCAGGAAGAGCTTCATCCGACGGCGCCACCTCAAGAAGCACCAGGAGCTCCACGCCAGGGAGAAGCCCTTCACATGTTCCCAGTGCGGAAAGGGCTTCACCACGGCCTCTAGCCTGAAGCAGCACCAGAAAACCCACGCAGGGGACAAGCCTCACCGCTGTACACAGTGCGGGAAGTGCTTTGCCGCAGCCGCAACTCTGCGGGAGCACCAGCGCATCCACTCTGGGGAGAAGCCCTACAAGTGCAACCAGTGCAGGAAGAGCTTTGTCCGCAAGCGCCACCTTAAGAAGCACCAACTGGTCCACTCGGGTGGGAAACCCTACTCCTGCGCCCAGTGCGACAAGAGCTTCAACCACTCCTCCTCGCTCTCCCGGCACCACAAGGTCCACCTGGAAGCACGcatctactcctctcctccccagggCAAGGCCTTCTCCTACGGGTCCACTATGAAGCAGCAGTCAAGGATGCACCAGGGGGGAGGCGCGGGAGACAAACCGTACACCTGCAACCACTGCGACAAGAGCTTCAATCATTCCTCCTCCCTGTCCCGCCACCAAAGAGTCCACTCGGAGGGGAAGAGCTACACCTGCGGCCACTGTGGGAAGAGGTTCAACCACTCCTCTTCCCTGTCCAGGCACCAGCGTGTTCACCAGgagcagaagcagcagcagcaacaggtaGTGGTGCAGCAACAGTACAGCGCCGTTCCCTCGACGAAGGGATTCCCCCACACCACCATCCTCAAACAGCGTATCCTGGCCAGCGAGAAGCCATACAggtgctcccagtgtggaaaagGCTTCAACCATTCATCTTCTCTCTCCAGGCATCATAGAATCCACATCGACCAGTGAGATCCCTACACACACCTACTCtgtctttcactcacacacagccCTGACCGACACCCACCCCTGTGATGTTTCTGTTCTACCAATCGGTCCCGAGCTCCAGACGACAAGGACTACAGCCAATAAAACCCGGCCAGCTCTCCCAGTAACAGTGTAGTGGTCAGGGGCAGAGTTTAATTTGTCTCTGTGTGGAGCAGTCGATACAAATGGACGATGACACAACCAAAATATCCTTTTCGAAAGGAGAGAAATAAAAGTTCTAGCCTGAACTTATAATAACCCTTTACAGACGAGCTGTTGAAGTTGGGTTGCTTGACAAGTTCCTAGGACTTTCAGATCAGTTAGTTTTGAATAAATTGTGTGATAGACATTTTGAATGAGCCTGTGTTTCTCCTTTGTGATTGTGATTCTTTGCTCCAGAACCCCCTCTTTTTGATTGCTTTTAAAGAAAAGAAAAATGATTTGATAATCTAGATAAATGTTACCTGACTAACGGAGAGAAACACTTGTCGTTATTCCACTCGTGCATAATTCTCCCCCTACTATATGGAGTGCTTTTCCGATCTAACCCTCGTTGAGGTCAATCTCCCACTCTTGGCTACTGATGCAACTTGCGATCAAGTCATACTGTCTTGATGGCATAAATTAGCAATTTTTCAAATGTGCATTTTTTTTAACCCATCTTACCACCTGTAAACTCATGGGGGGAGACAGATCCTATGTAAATAATTGTTGATTTATCCTTTTTTATATATCTGTATAGGTGACTACTGTGCAGTTTTGTTCCAGaaattagatgtattttttttatagtaACATCCACATACTCTCACCTCCCTTCTCCAGATTCCTTTTCATTAATTGTTTTTGTTACAGAGCTACCAGGAAATGTTGCTACTGCTCTCGTATGTACATACTGTCATATCTGGGTTTCCATCCAGTGAGATGCAGCTCCATGTGGATGGGTATGTACCCAGTGATGTGGTCTGTATTGTACAGCTAAAGTGTGGAGAGCAATACTGCCTCTGTATTTTGGGATGCAATTAACAGTCACGAAAAGGAGAAATGGACAAAATCAccgttaaaaaaaataaactatCTGGTAGCATTATCTGAAGTTGACTTGCGTCTGTTTTTAATTGATTCCCTATCCAGTTCTTTCAGCACCAAATGTAACATCATTATTAGATAGACGATGGACTCTGATGTTCAAGAGTTATTTCTTTACTCATTCAATTAGCAGTGTATAGAATTATAGTTGATTTCACTGAATGGTTTTGGGAGTAGAAGTGCCCAAATTGGACAGTGTAATAATAGGTTGTGTTTACTACCTATCTAGACGACTATAGGTTGCTTTTAGTTATCTAGACGACTATAGGTTGCTTTTAGTGACACCACTCTTGACTTTGAACTTCCAGGTTTTCCAAATTCCATGGGATTACGCCTTTTTATTTACTGTTCTGTGTatacattttaattttttttttttttttttaaataccgtTTGGGTCATTTTGAAAGGGAAGAATAGCTATTatactgttttaaaaaaaataaaaaatatgggaAGGAATTTTTATTTTGAGCAGACTTtattatttttacccctttttgaATAACGATAGCATAGGCCTATTCCTTGTCAGATAGGTGCCTTACTGCATGCTGTAGAAATGTATGCCGAGCTGtcataaaacaaacaaaaaaacttaTGGGTTGGCAACTCCTTTATTCTTAACTTACACCCAGCATTTTAAGTTGATGTCATTACTTTATTATTTTTGGGCTTCTATGTACATTGTGTTTGCACACTGTTACATCTTCATTGTCATTTAATTTTTTCTCCTGTCTTTGTTGATTGGCATTCAATGTAGATTTTCTTCAAGGTTGAATTAAGGAAGTGAGAATGTTTTTGATCCCTATATGGCTCTGATAACTGTAGAGGTCCCACCCAGCTCCACCTCTCCCCACATTTCTGACTGCTACATATATGGATAAATAAAAGTTGACTGTCAACA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104341 lncRNA downstream 889 83948902 ~ 83950168 (-) True G94630
TU104375 lncRNA downstream 61076 83888097 ~ 83889981 (-) True G94655
TU104376 lncRNA downstream 65122 83885102 ~ 83885935 (-) True G94656
TU104314 lncRNA downstream 99211 83840597 ~ 83851846 (-) True LOC110530866
TU104315 lncRNA downstream 133547 83814162 ~ 83817510 (-) False LOC110530866
TU104413 lncRNA upstream 1650 83958608 ~ 83958847 (-) True G94693
TU104422 lncRNA upstream 11869 83968827 ~ 83969103 (-) True G94702
TU104427 lncRNA upstream 18054 83975012 ~ 83975273 (-) True G94707
TU104428 lncRNA upstream 19639 83976597 ~ 83976815 (-) True G94708
TU104441 lncRNA upstream 74639 84031597 ~ 84104730 (-) False LOC110530927
XM_021614159.2 mRNA downstream 109164 83826949 ~ 83841893 (-) False LOC110530866
XM_036987189.1 mRNA downstream 229143 83713352 ~ 83721914 (-) False LOC110530770
XM_021614037.2 mRNA downstream 229543 83713352 ~ 83721514 (-) False LOC110530770
LOC110532804 mRNA upstream 9207 83966165 ~ 83967505 (-) True LOC110532804
XM_021614226.2 mRNA upstream 74596 84031554 ~ 84048130 (-) False LOC110530927
XR_002474617.2 mRNA upstream 140669 84097627 ~ 84110671 (-) False LOC110530947
XM_021614242.2 mRNA upstream 140671 84097629 ~ 84110671 (-) True LOC110530947
XR_005053182.1 mRNA upstream 165733 84122691 ~ 84126832 (-) True LOC110531009
TU104323 other downstream 148586 83801332 ~ 83802471 (-) True G94613
TU103830 other downstream 465120 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 989735 82949614 ~ 82961322 (-) False LOC100301648
TU104308 other upstream 201865 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 201865 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 246529 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 334802 84291760 ~ 84292623 (-) False LOC110532813
TU104684 other upstream 334802 84291760 ~ 84293583 (-) False LOC110532813

Expression Profile