RNA id: TU104308


Basic Information

Item Value
RNA id TU104308
length 1498
RNA type TUCP
GC content 0.48
exon number 3
gene id LOC110531033
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84157529 ~ 84256949 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGAGACCAAGGCTCAGAGGCAGAGTGCTGAAGCTGTGCTGGGACTCAGGCAACAGGTGGAGAGGCTGAGGGCAGAGCTGATGTATGAGAggaggagcagtgaggagcagcTGGGAGGatttgaggaggagaggagggtctggcaGGAGGAGAAGGAAAAGGTGATCCGCTACCAGAAGCAGCTGCAGCAGAACTACATCCAGATGTACAGGAGGAACAGAGATCTGGAGAGGGTGATGAGAGAGCTCAGTCTAGAGCTGGAGAACAGAGATGTAGAGGACTACGACGTCCACAGCGGCAGCAACGACATCCACTTCGAGGAGATCGCCGCTACTGAGATCTAAAGGGACCATACAAGGGTGTCCTCTCGCCCCAGTGAGATTTAGAGACCAGACAGGGGCGTTGTCTAACCCCAGTGAGATTTAGAGACCAGACAGGGGCGTTGCCTAACCCCAGTGAGATTTAGAGACCAGACAGGGATTTGTCATACCCCAGTGAAATTTAGAGACCAGATAGGGAGTTGTATAACCCCAGTGTCCACTCGCTCCCATGACAATTAGTACCAGCACCCTGATTTGATCTGATTTCCCCATCACTGCTACTGAGAGGTCTGcatccaaatggaaccctattcgctatgtagtgcacttattttggCTAGAGAACAGGTTACCGTTTTAAATTTGCATCCAGACTACAGAGGGTGTACCTGGACTTACTCCCCTAACCACAGTACCAGCACTCTTTACTTCTCTACACTCTTAGGAAAAgatgtgctatctagaacctaaaagggttctcatctgttcccataggataaccctttgaataactagttttggttccagatagaaccctttagGTTCCATGCAGAAGCtcaaaccaaaaagggttcccccatggggacagccaaagtATAGTTTTGGAACCCTTTTCTCTAAGTGTGTATGCTGTCATGGACAGGGAGCATCTCTGTCTCAGGGTTGAGTTACTCCACTAGACACTGGGATGCACCCTCCTCTAGGGCCTCACAGGAACAGCTGACTGACTACCTGCAGTCAGAAAGGACTCCATCACTTCGCCATTCGGACTTGAAAGAAGTTTAGGGTGTATCTCAACAGTTTAAAGTGGTTTCCTTTCCAGATTGAGATTCACCCTCAGACCAACACATCCTCCTTGCCTTCTCACATGGGTTTGATTGCCCAGCTATAGTACCAGCACTCTATGGGATGTATACTATGACTTTTGACTTGAGAAACAAGCAGGCATCACTCAAACCTTGCTCAAATCAGGGCATTGAAAGCAATGGGAGTCTCAGATAAAGGGCACAAATCTCAGATCAAGTCAAGTGAAATCATCTCTGTATATAGCACACAGGGGTGACTACCTGACGACCAGCACAtaattatgacatcacaataaagaTGGCATCACCCCTCGACTGTGTTTACATTTGTCCACAGGACTCAGAGCAAATGTTCCACTTTTACAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104318 lncRNA downstream 3292 84155166 ~ 84155531 (-) True G94608
TU104319 lncRNA downstream 6707 84151356 ~ 84152116 (-) True G94609
TU104526 lncRNA downstream 36813 84121792 ~ 84122010 (-) True G94790
TU104522 lncRNA downstream 40597 84117978 ~ 84118226 (-) True G94786
TU104519 lncRNA downstream 43676 84114779 ~ 84115147 (-) True G94783
TU104536 lncRNA upstream 11765 84172529 ~ 84172741 (-) True G94800
TU104537 lncRNA upstream 12715 84173479 ~ 84173702 (-) True G94801
TU104539 lncRNA upstream 15119 84175883 ~ 84176091 (-) True G94803
TU104541 lncRNA upstream 16407 84177171 ~ 84177482 (-) True G94805
TU104542 lncRNA upstream 18029 84178793 ~ 84179037 (-) True G94806
XR_005053182.1 mRNA downstream 31991 84122691 ~ 84126832 (-) True LOC110531009
XR_002474617.2 mRNA downstream 48152 84097627 ~ 84110671 (-) False LOC110530947
XM_021614242.2 mRNA downstream 48152 84097629 ~ 84110671 (-) True LOC110530947
XM_021614226.2 mRNA downstream 110693 84031554 ~ 84048130 (-) False LOC110530927
LOC110532804 mRNA downstream 191318 83966165 ~ 83967505 (-) True LOC110532804
XM_036989962.1 mRNA upstream 131529 84292293 ~ 84331700 (-) False LOC110532813
XM_036987540.1 mRNA upstream 599334 84760098 ~ 84781879 (-) True LOC110522386
XM_036989976.1 mRNA upstream 1000986 85161750 ~ 85171855 (-) True LOC118966724
XM_036987580.1 mRNA upstream 1011180 85171944 ~ 85207253 (-) False LOC110516660
XM_036987587.1 mRNA upstream 1011180 85171944 ~ 85207253 (-) False LOC110516660
TU104323 other downstream 356352 83801332 ~ 83802471 (-) True G94613
TU103830 other downstream 672886 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 1197501 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other downstream 1197501 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other downstream 1197501 82949614 ~ 82961322 (-) True LOC100301648
TU104557 other upstream 42723 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 130996 84291760 ~ 84292623 (-) False LOC110532813
TU104684 other upstream 130996 84291760 ~ 84293583 (-) False LOC110532813
TU105357 other upstream 568100 84728864 ~ 84729423 (-) True G95494
TU105500 other upstream 818969 84979733 ~ 84980272 (-) True G95624

Expression Profile