RNA id: TU104557


Basic Information

Item Value
RNA id TU104557
length 958
RNA type TUCP
GC content 0.42
exon number 2
gene id G94821
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84203487 ~ 84204464 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccatgtctcaccctctctctcacacctctttctctccatctctctttctttcttgctacatctctctctttctctcttgctacatctctctccttccctcttgctacatctctctccttctctcttgctacatctctctcctctcttgctacatctctctccttctctcttgctacatctctctctttctctctcacacttttttctctccatctctctctcttgctacatctctctctttctcttgctacatctctctttctctcttgctacatatctttctctcttgctacatctctttctctcttgctacatctctctctttctcttgctacATCTCTCTTGCtacatctctccccttctctcttactacatctctctctttctctctcacacctttttctctccatctctcttgctacattacatctctctttctctcttgctacatctctctttctctcttgctacatctctctctttctctcttgctacatctctctctcttgctacatctctctcttgctacatctctctctctttctctcttgctacatctctctttctctcttgctacatctctctttctctcttgctacatctctctttctctcttgctacatctctctctctttctctcttgctacatctctctctctttctctcttgctacatctctctttctctcttgctacatctctgtttctctcttgctacatctctctctttctctcttgctacaTATCTCTCTTGCTACATATCTCTCttgctacatctctctctttctctcttgctacatctctctctctttctctcttgctacatctctctcttgctacatctctctctttctctcttgctacatctctctctttctctcttgctacatctctctctctttctctcttgctacatctctctcttgctacatctctctctttctctcttgctacatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104555 lncRNA downstream 902 84202350 ~ 84202585 (-) True G94819
TU104554 lncRNA downstream 3570 84199504 ~ 84199917 (-) True G94818
TU104553 lncRNA downstream 10296 84192784 ~ 84193191 (-) True G94817
TU104552 lncRNA downstream 11737 84191468 ~ 84191750 (-) True G94816
TU104549 lncRNA downstream 17526 84185727 ~ 84185961 (-) True G94813
TU104569 lncRNA upstream 18689 84223153 ~ 84223460 (-) True G94833
TU104570 lncRNA upstream 19221 84223685 ~ 84223908 (-) True G94834
TU104579 lncRNA upstream 27426 84231890 ~ 84232203 (-) True G94840
TU104583 lncRNA upstream 31973 84236437 ~ 84236648 (-) True G94844
TU104590 lncRNA upstream 37343 84241807 ~ 84242044 (-) True G94851
XM_021614340.2 mRNA downstream 6187 84157529 ~ 84197300 (-) False LOC110531033
XR_005053182.1 mRNA downstream 76655 84122691 ~ 84126832 (-) True LOC110531009
XR_002474617.2 mRNA downstream 92816 84097627 ~ 84110671 (-) False LOC110530947
XM_021614242.2 mRNA downstream 92816 84097629 ~ 84110671 (-) True LOC110530947
XM_021614226.2 mRNA downstream 155357 84031554 ~ 84048130 (-) False LOC110530927
XM_036989962.1 mRNA upstream 87829 84292293 ~ 84331700 (-) False LOC110532813
XM_036987540.1 mRNA upstream 555634 84760098 ~ 84781879 (-) True LOC110522386
XM_036989976.1 mRNA upstream 957286 85161750 ~ 85171855 (-) True LOC118966724
XM_036987580.1 mRNA upstream 967480 85171944 ~ 85207253 (-) False LOC110516660
XM_036987587.1 mRNA upstream 967480 85171944 ~ 85207253 (-) False LOC110516660
TU104308 other downstream 42723 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other downstream 42723 84158823 ~ 84160764 (-) True LOC110531033
TU104323 other downstream 401016 83801332 ~ 83802471 (-) True G94613
TU103830 other downstream 717550 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 1242165 82949614 ~ 82961322 (-) False LOC100301648
TU104675 other upstream 87296 84291760 ~ 84292623 (-) False LOC110532813
TU104684 other upstream 87296 84291760 ~ 84293583 (-) False LOC110532813
TU105357 other upstream 524400 84728864 ~ 84729423 (-) True G95494
TU105500 other upstream 775269 84979733 ~ 84980272 (-) True G95624
TU105686 other upstream 953278 85157742 ~ 85159313 (-) True G95784

Expression Profile