RNA id: TU104375


Basic Information

Item Value
RNA id TU104375
length 1742
lncRNA type antisense_over
GC content 0.38
exon number 4
gene id G94655
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83888097 ~ 83889981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttttatacaCAAAAGGGCTCTAAAGATACAGGACAAAAAGGCAATAAAACAATAAAATTGACCACTTTAATTCTGCAAAGGACAACCATAGTCAATTTTCAATAGAAAAATTAAATGCACTAGGCTGCTTTGGGCTCATTTCTCAAGTTTCTCTCTCATCCAGGAattcatcaccaccatcatcatccctGTTGCACAACCTTCATCtgagaagagagggacagaatcATAGCTCCTCACAGTTCTACAACAACCCAATAACAGAAAACACAGCACAAAAGGCAGGACCAGACCTGAGGCTGCATTTCTTTTGATGTTAGTGGAGACAGTCAGTTTATGGTTTGGCTATGCATTTACTTCCCTTAACAataaacaaaaacactaaacaatcCCAACGTGGACTTAACACTTACTACCATGGTCTCACAACTCCTGGGATAAAACAAGCTTGTTACTGGAATAGGCCTCAGAGACTGAGGTTTCACATAAGGAGCTGCATGCAAAACTATGGTCGTATTTATTGGGCACCAAACGGAAGCAACCGGGCTGAAACGGGGAGATACTATCTGAACATGTACAATAAGAATCTCATTCTCGTGTTCCGTTTCAAAACGCTTTGCTACGTTGTTCCCTAATGAATACGACTCATGTCTCAGAACAATTGCAGTCAGTCAGTTACAAAGAATAACAGTAGAAAATACAGAATAACTCATGAGTTTTATGATCAGCCGTCAGTAGAACAGAGTTAAGAGAGAAGAGGAACATGTGATAAAGCCATTCTTCAAGGTCCTAATCCCTGAAACCTCCCCTTCAAATATatcattgtttttttattttaaatatattttttatgaatCCACTTGAACATAAATAACACCATTATTGCTAATTAGAAGTATGTACAACCAGGGTTCTCCCCTAAGAATGTAAGAGGGGTGCTGTGCCACCTTGTAGACTGGTTGCGCCATTATGTAAATTCTCTTTATTTGTTGTAATTTAAGccaattttttctctctcttgatTACAGAAAATGGCAGTTCGAGGTGTTAAAAAAAGCAAAAATCTGCCCCCCGCCACCATACTCAGCAGTACAACCTTGTTCAAAAATCCTGGAGAGAACCCTGTAACAAGTCACACATACTGGGATCAACGTTGTGGTACTATTTGGGCAAGGCAATGAACGGGCAATACAGAATAAAACAAAACATTCAAATGATCATCAATTGAGGAAGCGACTGAAATCTAAAACGAATACCGTAAACAAAGAAGCACTTCACAACGCCATGCACACAATTTCTAacaaaaatATAATAACAGAGAATCAAACTGTAATTGATATCAAAACAATTAAACATATTTCTTATTTTCAGGTGAAAACAGTGAGGTTACATGAAAACATTAGAACCAATTAAGTGAAtgcctgtcccaaatggaactacattccctatagtacactacttttgactagagccctataggTTCCAATCAAAAGCAATGAAATACAAAAAGAATAGAATGCCATTTAGGATTCAAACAATGAGAATCTATACATGGTCCTGGTGGGGGAAAACAACAACCATGGGTCCAAATGAAACTCAATCAAATTATGCTTGTTTTTAGCGCATATTTACAAGGTTGGTAAGAAACGTGTCCGATTAGACAACTCACTCACTGTCCAACTCCTTCATTAATTCATCTGAACCATTGGTTGTTTGGGATATTTGGTCAGGGGTGGCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104376 lncRNA downstream 2162 83885102 ~ 83885935 (-) True G94656
TU104314 lncRNA downstream 36251 83840597 ~ 83851846 (-) True LOC110530866
TU104315 lncRNA downstream 70587 83814162 ~ 83817510 (-) False LOC110530866
TU104048 lncRNA downstream 90086 83794650 ~ 83798011 (-) True G94374
TU104043 lncRNA downstream 96531 83791307 ~ 83791566 (-) True G94372
TU104341 lncRNA upstream 58921 83948902 ~ 83950168 (-) True G94630
TU104413 lncRNA upstream 68627 83958608 ~ 83958847 (-) True G94693
TU104422 lncRNA upstream 78846 83968827 ~ 83969103 (-) True G94702
TU104427 lncRNA upstream 85031 83975012 ~ 83975273 (-) True G94707
TU104428 lncRNA upstream 86616 83976597 ~ 83976815 (-) True G94708
XM_021614159.2 mRNA downstream 46204 83826949 ~ 83841893 (-) False LOC110530866
XM_036987189.1 mRNA downstream 166183 83713352 ~ 83721914 (-) False LOC110530770
XM_021614043.2 mRNA downstream 166583 83713352 ~ 83721514 (-) False LOC110530770
XM_021614203.2 mRNA upstream 61076 83951057 ~ 83956958 (-) True si:ch211-198a12.6
LOC110532804 mRNA upstream 76184 83966165 ~ 83967505 (-) True LOC110532804
XM_021614226.2 mRNA upstream 141573 84031554 ~ 84048130 (-) False LOC110530927
XR_002474617.2 mRNA upstream 207646 84097627 ~ 84110671 (-) False LOC110530947
XM_021614242.2 mRNA upstream 207648 84097629 ~ 84110671 (-) True LOC110530947
TU104323 other downstream 85626 83801332 ~ 83802471 (-) True G94613
TU103830 other downstream 402160 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 926775 82949614 ~ 82961322 (-) False LOC100301648
TU104308 other upstream 268842 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 268842 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 313506 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 401779 84291760 ~ 84292623 (-) False LOC110532813
TU104684 other upstream 401779 84291760 ~ 84293583 (-) False LOC110532813

Expression Profile