RNA id: XM_036987640.1


Basic Information

Item Value
RNA id XM_036987640.1
length 6851
RNA type mRNA
GC content 0.51
exon number 22
gene id LOC110510598
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 85247338 ~ 85299641 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGATTGGCTGACCCCACTGTGTGATAAGGCCCCTGGCAACCATGAGCCCTAGCAACCAATCGGTTTGGCTATGGCTAGAGGTGTGAAGGGCAAGTTCATGATTTGACATCGGTTATTTgagttctcagttgtcttgaaagcaccaaaaGAGTCACCggcaaggacgtcagaggaccaCTTGACAGGATCTGCGCAGCAACTGCGCAGTTTTTATGTTCGACAACGTGCGTGGTCGCTTCCACTGTTTTCCTTTTTTCCAGCGGATCGTCGCTAGCCTTGTCAGGCTGCGGAGGCTGTGTGCAAGATCAAGGGACTGGATTGACTACCCATGTCGTTGTCCCGTTTGGTTTTGAAGTCGGCTTAATGCTGTTTTGTTATAGTATTTCGTATTTTAACTATCAGGAGAAGTGATCTGTCGACACAGAATCTGGGGTCATAATGTCCCAGATGATGTAAGCCTTCTGTCTGCCTCTGAAGCCAAACATGAGTGAGGTGCAGGCCACGGTGGAGTTCTCTGTTGAGCTCCACAAGTTCTACAATGTGGACCTGTTCCAAAGAGGGTTCTACCAGATCCGTGCCAGTATGAAAGTGCCATCACGAGTCCCTCACAAAGTAGAGGCCAGTCTACTCCACCCACCagGTTCTGATCTGGCCTTCCCTGCAGCTGTGGTCGATGACGTCATCTGCAGCAAGACCTTCCAGATCCTCTATAAGAACGAGGAGGTGGTTGTCAATGATGTGCTGGTGTTCAAAATCATGATGCTGCTGGATGAGAAGAAGGTAGAAGAATCCCTCAATGACATGGACTTCCAGCTGTCTCTGGAGTTATACTTCACAGATGGAGACTTCTCGCCCGAGGAGCTCAGCTCCCTGCAGAACATCAGCAGTCGTTCGCTCCGCTTGCACTTTAGCCTGAACCGAGGCATCCACCAACACATCAATATCATGTTCGACTACTTCCACCTGTCTGTCGTCTCTATGGCCGTCCACGCATCCCTGGTTGCCCTGCACCAACCCCTCATCAGTTTCCCCCGGCTAGTGAAGAGTACATGGCTGAATCGCACCGCCCCCCAGCAGAGTAAAGACTCTGTCATCCCGGCCCTGGAGAATGTGGTGTTTGGAACCAGCTATGTCAAACAGCTGTCTGCTGATGGCAGAACATTCCTGGTGTCAGACCAATGTCTGCAGCATGCATTCAGTCTTCACCACAGTCTCTGTGCCAGCCTACTGCTGGCCTACCAGGGCCTGTTTGGTTACTTCACCTCCGTCAGCAAGGACCTGCCCTCCTCACACCGCATGGAGCTAGCCAAGCCCAGCATGCAAGTCCTTTATGAGAGAGTACTGAGAAGACCCTTCCCTCCAGACCAAAGGCACGTCTTTATAGAGGAACTAGACGTTGAGAACCGTCTCACTGAGCTCTGTGATCAAGTCAAGagagcagagagcccGGACGAGCTGGCAGAGCTGGTCAATATGAACCTGGCCCAGCTGTGTTCCCTCCTCATGGCCCTGTGGGGTCAGTTCCTGGAGGTGGTCTCACTGCAGGAGAATGTTGCTGCCCTGCTGGCTGTGGAACATCACACACTCAGAGTGCGGAGATTTGCAGAGGCCTTCTTTTGTCTGGAACACCCGAGACAAACGGCACTGGCCTATCAGGAACTACATGCTCACAGCCACCAGCAGATGACCACAGCCATCAAGAGTTCCTCCTACTTCCTGTCTCTACCACCACTTCCTGTTGCATGTGCCGACCTGGACGGGGACGTCAGCTCCCTGCCAATCATCTTCGAGGACAGATACCTGGACTCTATCACGGAAGATCGGGACGGGCCGTGGCTGGGCATACATAACCCCCGGAGTGGCTCCACGTCCTCCGGTAACTCTAAGGCCTCATCCTCTTCCACTGCAGCTGCCGCAGCATccttccccagccccatcctGGAGCCTCGGCCCCCAACCATGATGGACACAACCTGGCCCGATGACTGCCCAGACCTGCCCAAGTCCAaagGCAAGTCGGTGAAACTGAAGAAGAACGCCAAGACGGAGAGGGAGAACGCCAAGAAGCTCATCAGACAGGGATCCAAGGACTCTGTGGTTCTGGTGGCTTATAAGAACCTGGGGAAGGCCGCTAACTCGGCTAACCCTTCACAGCTAACACATGGAGAAACTGACCATGACAGAGAGGCCCAGGGACAGGGAGAGGCTGGCCTGAagcagcagagggaggagagggagcagggggagagggatgcCTTGCTGGGGGTAACTGGGGGAGACTCCAACACTGACCTAAGGACTAGGATCTCCAAATATTTTCCTGAGCCTGGTGCTACCACCGCCGCTGGACAGGCAAATGCTGTTCTTAATTTTGACTCTCTCCTTGAGGACGACGTCCTAGTAGCTAGTGGCGTGGCTAGCCAGAAAGGTTACTTCACAGCCTTAGTGAGCTTGGACACACAGAACAAGCCGGCCCAGGCTGGTCCTGGAGCTGTAGCCGGATTAGCCACCACAGATAATAACCAAGTAATTAACAAAAATGCTGCCATTGACCACTGCAGCCAGCAGCTGCCCGATCACTACACGCCTGGTTCTACCGCCACTGGACTCAGGCACATCGAGGTCCAACCCAGTAACAAGGACCCGTACCAAGGAGACACAGTGACAGTTCTCCTGCCCTGTCGGACGGATGGGGATGGGACCTCCAAAAGAGATATCCCAGAAATCACCCAGACAGACCTGTGTATGCCCGACTCTAAACACCTTGCTATGAGAGACTGGAGTTCTGAGGTGTCTGACAGGCTTCGGGGTAgagaggtaatgacagaggttaGTCAGAGGCCAGGCCTGGTGCTTCTACAGCAGGTGAAAGGTGATTGTATCAGGCTGCCACCAGACGGAGGTGCTGCTGTCCCCAGTGCCTCCTCCCGCCTCTCCGACTCTGGTATCGAGAGCGAGCCCAGTTCCTTCGCTATCCAGCTGGCTACCCAGGGTGGGGCCGTAGGGCTGGCTGGGGCCCCTGAGACTGAGTTGGGCCCCCAGCAGGCCGAACGGCCCCTACTCAGCCCTGCTCCCCGGCCCGTCCAGCCCACCTCTGTCCATAAGGGCAGCATGGGGACTGGAGAGGGCCTCAACCCGGAGAGCACAGTCAGCGCGGTCAGCGGCGTCCAGTCTTCCCTCACCTCCATCAACTCGCTGCCCTCGGATGACGAGGCGGAGGGGGGTACGTCTGTGTCCAGGGGCTCCAGCAGTGTAGGAGGAGGGGAGGCCGAGGGGCCACCAGGCCCAGGGGGAATGAGGAAGTCCAGTGTTCTGGTACAGGAGCAACAGAGCCTGGTGTTCTCTGGAGAACCACCACCATCTGTCCCAACACGCTGCTCTGTACCCAGCCAAACGCACCCCGACGCTGGGTTGGGCCTCAACACCACTGCTAGTGGGGGTTCTGCATCTCAATATCTGCCTCCTAAGACTTTTTCCTCAACCTCTGAGTCAACACTTAACACTGATCCCAGGTTGTTAACAGGTTCCTCTGAGGGGGCTGTAGGGGGTCCAGGTGCCCCCCGTAGTGAGCCCCAGACAGCCTCCTACCCCTCCTCTAACTCCACCGCCAGCAGCAGTGACCTGGTCAAGAAGGGACTGGTAGAAAACTACTTTGGCTCGCGCTCCAGCACAGACGTCTCAGAGATCAGCCCTGTAGAGACGTCAGCTATCACCCTGGGGATACTGTCTGGAGCGGGGCCGGGGCCGCCTGTAGAGGAAGACGAGGAAGAGGACAACGAGATGATAGAGAACGGCTTCTACGAGGAAGGAGACGGCTTGGCGTTCGTGAACGGTGTcgttgacgaggaggaggaggaggatgaaggagaTGGAGGGGCAGTAGGAAGGAGTATGTTGTTTGAACAGTTGGGACTGGACCATGTTCAGGAGCCCAGGGGTCTTCCTCCAGGCTATGGTGCCCCTGTCCGCTCCCCCCTGGCCCCTAGCTCAGTGGGCTCTTCCCAGGGGAGACTTCTAGTccctaccccctccacctccctcaccTCCAACAGCCTGCGCTGGTATGACAGCGCCCCCACACCACAGATGAAAGCTTTTGTTGCGGCCAAAGAGGAGTTGAAGCAGCTGAGACTACCAGGGTTCCTGTACAGTGAGGTGGGAGACCTGGCCTCCAGTGTCCCTTACTTTAGCCTGGAGGAGGATGACAACTGTGACGAGGGCATCCACCTCATCGTCTGTGTCCACGGCCTCGATGGTAACAGTGCTGACCTGCGTCTGGTGAAGACCTACCTGGAGCTGGGCCTACCTGGAGCTAGGATAGACTTCCTCATGTCCGAACGCAACCAGAATGACACGTTTGCTGACTTTGAGCAGATGACAGACCGGCTGTTGGATGAAATAGTTCAGTACATTCAGATCTACAACCTCACTGTCTCTAAGATCAGCTTTGTAGGCCACTCCCTGGGGAACCTGATAGTTCGTTCAGTACTGACCAGACCCAGGTTTAAATGTTACCTGAGCAGACTTcacaccttcctctctctgtctggaccTCACCTGGGTACCCTGTACAACAGCTCTGCTCTGGTCAACACAGgCCTGTGGTTCATGCAGAAGTGGAAGAAGTCTGGCTCCCTGCTCCAGCTGACCTGCAGAGACCACTCTGATCCCAGACAGACCTTCCTCTACAAGCTTAGCAAGAAATCTGGTCTTCATCACTTCAGGAACGTGGTGTTAGTGGGCTCTCTGCAGGATCGTTACGTCCCATATCACTCAGCCAGGATAGAGATGTGTAAGACAGCCCTGAAGGACAAACAAACAGgTTCAGTATATGTAGAGATGATAGAGAACCTGTTGCTGCCGGTGCTCCAGAACAGAGACTGTAACCTGGTGCGTTACGATGTCATCCATGCCCTGCCCAACACCGCCAACTCCCTGATTGGCCGAGCAGCACACATCGCCGTCCTCGACTCGGAAATCTTTCTGGAGAAGTTCTTCCTGGTCGCAGGACTGAAGTTCTTTCAGTAGGAGGGGAGGGGTCTATGAATCCAACTAATGGCTGGAAGGGGGGCTTTACCAATCTAACCAATGGCTGGAGCGGAGAGATATTTTTTCAGTAGGAAGTAGGAGTGGCCACCCAATCAAATCAATGACTGGAGGAGGGAGAATGGGGGCCTCCCAATCAATAACCTGGTCCCATATCTGTTTTGACTGTTTTGGTCAACTCCTATTAGTCATTGACATgccaaaaaaaatgtatgcattgtATCCTGTGGAGGTCAAACTAACTCCTGTGGAAGGAGTTCACACATTTAAGACCATGTCAGTGATGCTGAAGTGAGATCTCTGCCCATCTCCATCCAATGACCATAGAAGTTGGCAAGActgcacaaactgatctgggaccaggctagcaaaTAAAACCTGTGGCTGGAGGgataggggaagagaggaggacgtGGAGCATACATAGAATATAATTACTAGACCATCAATCTAGTGATGCTATTTCTATCATGTGTAGCTTATATTACCTCACTGCATCCAAACCCCAATTCTCAATATTGTATCTGGTTGAGGCGTACGGTTTTATAGATGCATCTGCTTCCATATGGAAGATCAAAATTCTAATATCAGTGTtttatttttagtttttttagcTCTTTTTTTCATTGGTTTGTTAGTGAATGTTCCTCATTTTTATTGTTCTACTTCCGTTTTTCAAAGGATGATTTCAAGTTGATTTTATGAATGTACTTGTGGTGGGGGGATGGTTTTCCTTCTCATATTGTAATCTTTTCAGTGTTATTTATCTATGAAATTGTTATATTTTCACATGGTTTTGTTCAAAccattcattcatttattaaGACGATTGCAATACCGATCTGGAAATGTAGCTGCTAAAAATGATGAGCTGACTCATCTTCTCATATTGTcgtcacctttatttaaaaggTGCAttttcttcaacaacaacaaattagTCGTAAAGTCAAACTATTATACTCTTGCATTAATTTGCACCACAACTGTATAAAAAAAACTGATTTTCTACTGAGGATGGTCATTTTTACTAAGTACATATTTTACTATCAGAATTTTAATTTGTGTTATTTTATCATTTTACAAAGGTAAAGGCTTCCAGTCTAGTCGAACTAACTTAACGGAATCAATTTGATTGTAACTCGGACAATGCAGCCTGGGACTTATAAGGCTTTGCGGTTTTCTATAGCTCTGGACCAGGGCGTTCGGTGCAGGTTGTTGGCGCTGAGCCTTCCTGAACAGGGGAAGAGACAACTCGTTGCGCAATGGACCAGAGCTAGGTTTTATACTGTATGCTGTTACTTTGCCATTACAGCATCGTGCACAACACTAAACCCAACCTGGTGTTGGGAACATTATACGAGCCTTGCTTGATTAAAGCATGAGAACATTTTATTACAAGAGGTTTTAAATAAACTCGTTCAACTGTTATAGCCAgaagggtcgtgttcattagggctcaccgtagcaaaacgttttcTAACAGAAAGCAAAGAAAGCCTTGCTTATTGGACAAGTTAATGTAGGGAAGAACCCTGTTTGATTCTGTTTTCTTCCGCCTGGTGCCAAATGAATACGACCCAGATGTAAAGGTGGGGTGTAGCCAAGGGTCAGTACTTATGAATAGCACATATTTTGGTTCATGGAGAGTATTTATGTTTTGCTGTCATAGATGGGTGGGGGAATTATTTATGCTTTTTAACATGAGTATTGTTTTTAGATAAAAAATCAACTTCTCATTTCTTTGTGAAAATGGTTTGTATCATTGCACTCTTTACcattaaataaatgtattataaATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105890 lncRNA downstream 19216 85227653 ~ 85228122 (-) True G95973
TU105885 lncRNA downstream 29132 85218005 ~ 85218206 (-) True G95968
TU105881 lncRNA downstream 34274 85212864 ~ 85213064 (-) True G95965
TU105710 lncRNA downstream 35580 85211546 ~ 85211758 (-) True G95808
TU105705 lncRNA downstream 50003 85197124 ~ 85197335 (-) True G95803
TU105926 lncRNA upstream 47218 85346858 ~ 85351766 (-) False G96002
TU105928 lncRNA upstream 47218 85346858 ~ 85351766 (-) False G96002
TU106016 lncRNA upstream 152792 85452432 ~ 85456627 (-) True G96062
TU106212 lncRNA upstream 386768 85686408 ~ 85686727 (-) True G96234
TU106217 lncRNA upstream 394896 85694536 ~ 85699631 (-) True G96239
XM_036987612.1 mRNA downstream 2897 85213382 ~ 85244441 (-) False LOC110510599
XM_036987622.1 mRNA downstream 2897 85213382 ~ 85244441 (-) False LOC110510599
XM_036987631.1 mRNA downstream 2898 85213382 ~ 85244440 (-) False LOC110510599
XR_005053210.1 mRNA downstream 2898 85214894 ~ 85244440 (-) False LOC110510599
XR_005053209.1 mRNA downstream 2898 85215507 ~ 85244440 (-) False LOC110510599
XM_036987651.1 mRNA upstream 58582 85358222 ~ 85624715 (-) False LOC110519057
XM_036987654.1 mRNA upstream 58582 85358222 ~ 85624716 (-) False LOC110519057
XM_036987663.1 mRNA upstream 72672 85372312 ~ 85624715 (-) True LOC110519057
XR_005051584.1 mRNA upstream 330961 85630601 ~ 85632159 (-) True LOC118964521
XM_036987682.1 mRNA upstream 591937 85891577 ~ 86047176 (-) False LOC110531925
TU105884 other downstream 22188 85218393 ~ 85225150 (-) True LOC110510599
TU105686 other downstream 88025 85157742 ~ 85159313 (-) True G95784
TU105500 other downstream 267066 84979733 ~ 84980272 (-) True G95624
TU105357 other downstream 517915 84728864 ~ 84729423 (-) True G95494
TU104684 other downstream 953755 84291760 ~ 84293583 (-) False LOC110532813
TU105927 other upstream 47218 85346858 ~ 85351766 (-) False G96002
TU105929 other upstream 47218 85346858 ~ 85351766 (-) True G96002
TU107204 other upstream 846369 86146009 ~ 86151339 (-) False G97047
TU107372 other upstream 1092921 86392561 ~ 86393089 (-) True G97176
TU107498 other upstream 1266837 86566477 ~ 86623311 (-) True G97251

Expression Profile