LOC110518258 (LOC105008825)


Basic Information

Item Value
gene id LOC110518258
gene name LOC105008825
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86783824 ~ 86864120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990001.1
ATGAAGTATGCAGTAGTGTTGGGGCCTATATTCCTGGGGGACGTCCCCTCCCATAGGGATCAGCCTGCCAGCACCAGGGAGGTGACGGGTTTTGTAGGCTGTATCAGGGAGCTGCAGGTCAACAATAAGGACATCTACATAACAGGAGAGGCACTGGGAGGGAGGAACATCCACAACTGTGATACACCTGTCTGTCAGCACCTGCCCTGCCGCAATGGAGGCACCTGTGTCAGTGATGCAGAGGACTGGTTCTGTGAGTGCCCTCCTCTCTACTCTGGTCGGCTCTGCCAGTTCACAGCCTGTGAGTGGAGCCCCTGTGGTCACGGAGCCACCTGTATCCCCAAGTCCCACCAGGaagctgtgtgtctctgcccTTACGGAAGACAGGGCCTGCTGTGTGATGATGCCATCAACATCACCCGGGCCAGGTTCAGTGGGAATGATGAGTTTGGGTACACCTCGTTCATAGCGTACTCTTCCATCCCCAGTCTCAGTGTCTACTACGAGTTCCAACTGAAACTAACGTTCGCCGACAGAGCCTCAGCTCTGAAGGACAACCTCATCCTCTTCTCTGGACAGAAAGGACAGGGAATTGATGGAGATGACTTCCTAGTTCTGGGGGTTCGGAATGGCAGAATTGTTCACAAGTTCAACCTTGGATCTGGTGTGGGAACCATGGTCAGCGACCGGCTGAACCGTGAGATCGATATCCACACTGTGAACTTTGGCAGATCTAAGAGAACAGGATGGTTAAAGGTGGACGGACAGAGAAACAGGACAGGCTCTTCTCCAGGCCACCTGGCAGGTCTCAACGCGCAAAGCCAAGTCTTTGTAGGAGGATATAATGAATATACTCCTGAACTACTGCCCCTCGGATCCAGGTTTCGCAATGGCTTTCAAGGTTGCATATTTAATCTGGAGTTTCGGACGAGGCGAGACGGGAAGTTCATAGCGTTGGGGAAGCCTGAGGGTCGTCCGAACTCTGGCCGTAGCGTGGGTCAGTGCGGGGTCACACCCTGCACCCTGGTGACATGCAGAAATGGAGGAACCTGCGTGGACTCTGGATCCTCTGTCTAcTGCCAGTGCCCATTCGGCTGGAAGGGAGCACTCTGCTCTGAGACCGTGTCTGTGTGCGACGCTGAACACCGTCCCCCTCCCTTGTGTGCCCGTGGTTCCACCTGCGTACCCCTTCCAGACGGATACACCTGCCTCTGCCCCTTGGGCACCGGCGGACTGCACTGTCAGCAAGCCATGGCCATCAGTGACCCGTTCTTCAGCGGTAACCAGTCATCCTGGATGTCTTTCCCTCCAGTCAGCATCAGACACAGGACAGACCTCAGGCTGCAGTTCCAGACTCTGTCACCAGAGGGCATCGTCTTCTACACAGCACAGCACCTCAGTGCCCGGGCCGGAGACTTCTTCTGTGTGTCCCTGACATCGGGGTTGGTCCAGCTGCGTTACAACCTGGGTTCTGGAACCAACGTGTTACAGTCCACTAACAGAGTGGACACCAGCGGAGGGACCTGGCACACGGTGAGGGCAGGCAGGACAGGCCACCAGGGGTACCTGGTTCTGGACGGGCTGGAGGTGAAGCAGAAcgacacagagggagggatgtCCACTCTGGACGTGGCCACGGACCTCTTCGTCGGCGGGGTCTCTGACTTGAGCTTCATCTCTACGTTTTCCGTGGAGAACGAGCCTGTGGGTTTTACCGGAGGCGTGAGAGAGCTCGTCTTAAACGGACATGACTTTGACCTGACGGCGACAGGGGCCCTGGGAGGGGCCAATGTGGGCGACTGGGACGGGACTGCGTGCGGGTACAAGGTGTGCCAGAACGGCGGCCGCTGTACTGCGTTGAGCGGCGCCGATTCGGACTCGTTTATGTGCACCTGCCCTCCTCGGTGGACGGGTCCTGTGTGTAACCAGTCGGTGTATTGTGTCAATAACCTGTGTCAACATGAGTCATTGTGTTTCTCTGATCTTGTGACTGGCTCATACGACTGTTTCTGTCCTCTCGGGTGGGAGGGGAGGTACTGCGATAAGCAGGTCGGCCTATCCATGACCACTCTGAAGTTCGTTGGGAAATCATATCTGAAATACAGGGATCCTAAATTCAACACACGGAATCTGAGGTACACGCAGGTTTCGTTTAACTTTACAGCCAGCGGGAACGAAGGGTTGATTCTGTGGATGGGAAGAGCGGAGCACGATGACGACGATTACCTTGCTGTCGGGCTTCAGGCGGGCCACCTCAAAATCGCAGTCAACCTCGGAGAGAGGCTCTCCCTCCCGCTCACTTTCAGAAACGTCACGTTGTGTTGCAACAAATGGCATTATTTATCGATCTCTCTGAACAGTACCCTTATTCAGGTGTTCCTGGGTGACGAGAGGGTCCTTTTCGAAGACGTGGACCCCTTCGAGCGTTACGTTGCCATGAATTACGGGGGTCTGTTGTACTTGGGAGGGTTCGAGTTGCACAGGAACATCTCAACAGTGACGTCTGGGCTGTTTACCAAAGGATTTGTGGGAGATCTTAAAGACGTGCGTTTGTATCAGGACCCCAGACAACTGCAGTTCCTCCAAAACAGCGAAGGATTTAATGTTCACAAAAGTAATGAGTAGTTCTGTAACTTGTGAAAATAGGTGATTCATGTGTTGTGATAAAGAAATTCATAGAATTGGTTTCTAGAATGTAATAATTTAAGTTCTTTATATCCAAGTTGTATTCATTatgcaccaaatggaagaaaacacaAACAGGGAGGACAACTTCCTGGAAGTGTTAATAAGCGTTtgtgttgttttttaaaatccattGTGTGCCCTGATGAACACAACTCTGTTGAAACTGCCAACTCCTCAGTAGATGGTTTATACCCTGAGTAttccaaacattaagaacaccttcctaatattgagttgccccctccctttcaccctcagaacagcctcaattctttggggcatggactccacaaggctactggcccatgtggactccaatgattcccacagttgtgtcaagtggctggatgtcctttggctggtggaccattattgatacacacaggaaactgttgagcatgaacaacccagcagcgttgcacttcttgacacacaagctggtgtgcctggcacctactacgcCATTCAAAGGCACAAATCTTtagtcttgtccattcaccctcaatggcacacacacaacccacgtCTCACCTGTCtcctacactgattgaagagaAACTccat
>TU107580
GACAACTTCCTGGAAGTGTTAATAAGCGTTtgtgttgttttttaaaatccattGTGTGCCCTGATGAACACAACTCTGTTGAAACTGCCAACTCCTCAGTAGATGGTTTATACCCTGAGTAttcctaatattgagttgccccctccctttcaccctcagaacagcctcaattctttggggcatggactccacaaggctactggcccatgtggactccaatgattcccacagttgtgtcaagtggctggatgtcctttggctggtggaccattattgatacacacaggaaactgttgagcatgaacaacccagcagcgttgcacttcttgacacaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990001.1 False 3252 mRNA 0.53 11 86783824 86864120
TU107580 True 336 lncRNA 0.46 2 86783953 86784308

Neighbor

gene id symbol gene type direction distance location
LOC118966041 NA coding downstream 51287 86730919 ~ 86732537 (-)
LOC118936335 LOC106592896 coding downstream 85599 86663515 ~ 86698225 (-)
LOC118966040 LOC106592896 coding downstream 133657 86602322 ~ 86650167 (-)
LOC110532855 LOC106562987 coding downstream 381660 86353680 ~ 86402164 (-)
LOC110531245 LOC106562987 coding downstream 434054 86299040 ~ 86349770 (-)
LOC118966043 NA coding upstream 62319 86926439 ~ 86954561 (-)
LOC110532959 LOC106577289 coding upstream 93778 86957898 ~ 87049090 (-)
LOC118966727 LOC106577289 coding upstream 298157 87162277 ~ 87166534 (-)
LOC118966728 LOC106577282 coding upstream 303765 87167885 ~ 87204885 (-)
LOC118966729 LOC106577282 coding upstream 343344 87207464 ~ 87230079 (-)
G97290 LOC106560778 non-coding downstream 17839 86765724 ~ 86765985 (-)
G97287 NA non-coding downstream 22995 86760188 ~ 86760829 (-)
G97285 NA non-coding downstream 26463 86757060 ~ 86757361 (-)
G97283 slc1a4 non-coding downstream 27059 86753745 ~ 86756765 (-)
G97278 NA non-coding downstream 43991 86737277 ~ 86739833 (-)
G97377 NA non-coding upstream 49436 86913556 ~ 87104621 (-)
G97379 NA non-coding upstream 49704 86913824 ~ 86914345 (-)
G97401 NA non-coding upstream 105703 86969823 ~ 86997815 (-)
G97440 NA non-coding upstream 174870 87038990 ~ 87039452 (-)
G97461 NA non-coding upstream 221516 87085636 ~ 87086121 (-)
G97251 NA other downstream 160513 86566477 ~ 86623311 (-)
G97176 NA other downstream 390735 86392561 ~ 86393089 (-)
G97047 LOC106577388 other downstream 632485 86146009 ~ 86153321 (-)
G96002 NA other downstream 1432058 85346858 ~ 85351766 (-)
LOC110510598 LOC106594326 other downstream 1523292 85247338 ~ 85299641 (-)
G97535 NA other upstream 430237 87294357 ~ 87294999 (-)
LOC110531505 LOC106597820 other upstream 1049182 87911053 ~ 87919678 (-)
pex13 LOC106592834 other upstream 1199342 88054545 ~ 88065123 (-)
G98510 NA other upstream 1354709 88218829 ~ 88220804 (-)
G98549 NA other upstream 1450156 88314276 ~ 88314696 (-)
G97312 NA non-coding upstream 14720 86799028 ~ 86804675 (-)
G97313 NA non-coding upstream 16135 86800443 ~ 86806508 (-)
G97315 NA non-coding upstream 22531 86806839 ~ 86807162 (-)
G97308 NA other upstream 2749 86787057 ~ 86788052 (-)

Expression


Co-expression Network