XLOC_031927 (pou3f3b)


Basic Information

Item Value
gene id XLOC_031927
gene name pou3f3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 14949950 ~ 14957388 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062511
AATCAACGAAAGCCTTACACCCGACTTCCTCGCATTTGGGGAAAAGACGTGGACGATGTACGCAGCACAGGGTAAACACTCGTGTGTCCTCGAGCTCTGAGGGAGGGACGGAGCTaactgtcagagagagagagaaagagagggagggagagcgAGCGAGGGAGAGGAGAGAGAACAAGCGAATGAGAAAGAAGGCATGCAACACTGCTTTGCACTGTAATACTGGATTGTACTTCAACTGGAGCGGTTTGGCAGGTTTAAACACATCAAAACAGAACAAAGAGACAGACTTTACAGCACCATAAAAGAATctgcaaaagaaaagaaataaagaaacgGAGCAAGTGAAATCGCTGCGGCTAAATAACAAAAGAATTGAGGAAGAACCACGTTCATATTTTTCCACTCGGTAACGGAACATACGTTTGGACTTATTATTTTTAAGGGCATTACAACTTCTTCAAGCGCCAGAACTTTTTCGCGGGACAGTTTTTGAAACAATTTTGAATCTatcattttttctctcttttggtttgttttcagacagacattttaaaaagaaaacacagaCTGGAGGACGGTTTGATTTCCGAGGGCTTTTCAACGCTGTCATAAAATTGGAATTTATCGTTTCAATCATTCATGTTCGAAATATATGAATCCACAAATTATTCAAGAGACGGATTTCGTCCACTCGCCTGCAGATACTTTCTCTTTGCTTTTTGTTGATGGTGTTTGCCAAAACACAAGCCAGACTTTTAAAGTTTGAATAATTCATGAGATATAATTTGCCTGCATTAAAAAAGTTTTTGCAAAAGGGAGGGGGTGATCAGCAAACATATTCATAAGGTTAACGGAATGGCCACAGCGGCTTCCAACCCTTATCTAGCCAGCAGTAGTATATTATCGTCCGGCTCGATAGTGCACTCGGACTCCGGGGGTGGGATGCAGCAGGGCAGTGCTGCAGTAACCTCAGTGTCCGGTGGGTACAGAGGAGACCCAACGGTTAAAATGGTCCAAAGTGATTTCATGCAGGGCGCAATGGCAGCGAGCAACGGGGGACATATGCTGAGCCACGCTCACCAGTGGGTGACGTCCTTGCCTCACGCCGCAGCGGCGGCTGCAGCTGCCGCAGTGGCCGCAGCTGAAGCCGGATCGCCTTGGTCGTCTAGCCCAGTTGGGATGACAGGCAGTCCGCAGCAGCAGGACGTGAAAAATAACTCTGGGAGAGACGATTTGCACTCTGGGACTGCGCTGCATCACAGGGCCCCACATTTAGGTCCCCACCAGACTCACGCGGGTGCCTGGGGTAGCACAACTGCTGCCCACATCCCTTCGCTAACAGGgagccagcagcagcagcagtctcTCATATACTCGCAGCCTGGCGGCTTCACGGTGAACGGCATGCTCAGTCCGCCGGGCAGCCAAAGCCTTGTACACCCGGGTCTGGTGCGTGGCGACACCCCGGAGCTCGATCACAGcagccaccaccaccaccatcaccaccagcaTCAACATCACCAGCAAGCACATCACGGAGTGAACAGCCACGACCCGCACTCCGACGAGGACACGCCAACGTCGGATGACTTAGAGCACTTTGCCAAGCAGTTCAAACAACGCCGGATCAAACTGGGCTTCACGCAGGCGGACGTGGGCTTGGCGTTGGGCACTCTGTACGGGAACGTTTTCTCGCAGACCACAATCTGTCGATTCGAAGCTCTCCAGCTCAGCTTTAAGAACATGTGCAAACTGAAGCCGTTGCTTAACAAATGGCTCGAGGAAGCAGACTCTTCCACGGGCAGTCCCACCAGCATCGACAAGATCGCGGCTCAGGGCAGAAAACGCAAGAAGCGCACCTCCATCGAAGTGAGCGTCAAAGGGGCTCTGGAGAGTCACTTCTTAAAATGTCCCAAGCCTTCGGCCCAAGAGATAACCTCGCTGGCGGACAACCTGCAGCTGGAGAAGGAGGTGGTGAGAGTCTGGTTTTGCAATCGGAGGCAGAAAGAGAAAAGGATGACGCCCCCAGGAGTGCCGCAGACGCCGGAGGATGTATATTCTCAGGTCGGCAATGTGAGTGCAGATACACCGCCCCCCTCCATGGACTGCAAACGAATGTTCAGTGAGACATAGAACAGCATACAagactaaaaaatattttatatatgacTAATCTGATAAAACACAGACTATCATCAAGATAGCAAAACATTTTGATACTGTGATTGTGAGGGATTATTGAGACTGCAGatgtgttatatatttttttcacaagaaaaacaaaatcaccCCTCTTTCTTTCCCAACCCTAAACCGCCCGCTAATCTTCTTCCAGGCCCTTAAATGTCTTAACCTAAAAGGTTTTGTCTGCTCTTTCTTTCAGGGACATTTTTTAGTAGATTACTTAAAAGATGCAAGTTTAACTGGGCCGAGCGAACCGGGCGACCAGAGGGTGACAACTACAAGTTCGTTCCACCAGGTAATTTTGGCGCATTAACTTCAACTGCAAATAACTGAAATTAGAAATGAACAACGCATTCTTTTGCCCCCTACCCCTTTACACCCATGTCTTGTTTGAGAGGCAAAAGGCGCAGGCAATTGTGTATGTTGTTATGGGACATTAAACTTCAAACAAAGGGATGAAATTCAGCTGCAACAATGCGAAGAACAGTGGCATCCACGAAGCTTCCATCCAACTTGGCAGAGAAGACTGCATGGTTTGATATTATCCAAAAATAtggaatggattttttttttggccttccaatccttacaaaaacaaaacaaagactgcCCTGATCTCCAAGATCACATCTTttgaaattgttgtttttttatgtaaaggaCTGAATCATACGTGGATTTTTGAGGACAAAATTAAATCAAAGATGACTTTTGAAAAGACTTAATATTCCGCAGCTGCACCTCTTTGAAAACCTTCTGTGCGAACATCCGTTGCCAAGTGGGCCAGAGCTGGTGCTGTGGATGTTTTCATGTGCTGCCATTTCCAAGCAGTATTCTTTGGTAGGTTTTAATAAACAAGACTATGTAAAGCCGGCAATATAGATTCATTAGATCAGATGCTGATCGgaattatttacttaatatttttcattaaatgctttgttttaatattttattcggGATACATACGAACTATTCCAAACAGTTATTTATTTCCCCCAGACTTGTGTAAAATGTCCCCCACCCCCTATTTTCGTTGTTGaccctttttgttttgtttaattttgtattcTCATTTATAAAAGAGCACAAATCTACACGAGCTGACTTTGACAGTAGGTAATAAGGGTATATTTTGATGTGATGATTTGATTGTAATTTAATTTCAGTAGTGATTCCGTAAGAGATGATCGAGAACAATAAATTTGTTAGAATG
>TCONS_00062512
ctctcttttggtttgttttcagacagacattttaaaaagaaaacacagaCTGGAGGACGGTTTGATTTCCGAGGGCTTTTCAACGCTGTCATAAAATTGGAATTTATCGTTTCAATCATTCATGTTCGAAATATATGAATCCACAAATTATTCAAGAGACGGATTTCGTCCACTCGCCTGCAGATACTTTCTCTTTGCTTTTTGTTGATGGTGTTTGCCAAAACACAAGCCAGACTTTTAAAGTTTGAATAATTCATGAGATATAATTTGCCTGCATTAAAAAAGTTTTTGCAAAAGGGAGGGGGTGATCAGCAAACATATTCATAAGGTTAACGGAATGGCCACAGCGGCTTCCAACCCTTATCTAGCCAGCAGTAGTATATTATCGTCCGGCTCGATAGTGCACTCGGACTCCGGGGGTGGGATGCAGCAGGGCAGTGCTGCAGTAACCTCAGTGTCCGGTGGGTACAGAGGAGACCCAACGGTTAAAATGGTCCAAAGTGATTTCATGCAGGGCGCAATGGCAGCGAGCAACGGGGGACATATGCTGAGCCACGCTCACCAGTGGGTGACGTCCTTGCCTCACGCCGCAGCGGCGGCTGCAGCTGCCGCAGTGGCCGCAGCTGAAGCCGGATCGCCTTGGTCGTCTAGCCCAGTTGGGATGACAGGCAGTCCGCAGCAGCAGGACGTGAAAAATAACTCTGGGAGAGACGATTTGCACTCTGGGACTGCGCTGCATCACAGGGCCCCACATTTAGGTCCCCACCAGACTCACGCGGGTGCCTGGGGTAGCACAACTGCTGCCCACATCCCTTCGCTAACAGGgagccagcagcagcagcagtctcTCATATACTCGCAGCCTGGCGGCTTCACGGTGAACGGCATGCTCAGTCCGCCGGGCAGCCAAAGCCTTGTACACCCGGGTCTGGTGCGTGGCGACACCCCGGAGCTCGATCACAGcagccaccaccaccaccatcaccaccagcaTCAACATCACCAGCAAGCACATCACGGAGTGAACAGCCACGACCCGCACTCCGACGAGGACACGCCAACGTCGGATGACTTAGAGCACTTTGCCAAGCAGTTCAAACAACGCCGGATCAAACTGGGCTTCACGCAGGCGGACGTGGGCTTGGCGTTGGGCACTCTGTACGGGAACGTTTTCTCGCAGACCACAATCTGTCGATTCGAAGCTCTCCAGCTCAGCTTTAAGAACATGTGCAAACTGAAGCCGTTGCTTAACAAATGGCTCGAGGAAGCAGACTCTTCCACGGGCAGTCCCACCAGCATCGACAAGATCGCGGCTCAGGGCAGAAAACGCAAGAAGCGCACCTCCATCGAAGTGAGCGTCAAAGGGGCTCTGGAGAGTCACTTCTTAAAATGTCCCAAGCCTTCGGCCCAAGAGATAACCTCGCTGGCGGACAACCTGCAGCTGGAGAAGGAGGTGGTGAGAGTCTGGTTTTGCAATCGGAGGCAGAAAGAGAAAAGGATGACGCCCCCAGGAGTGCCGCAGACGCCGGAGGATGTATATTCTCAGGTCGGCAATGGACATTTTTTAGTAGATTACTTAAAAGATGCAAGTTTAACTGGGCCGAGCGAACCGGGCGACCAGAGGGTGACAACTACAAGTTCGTTCCACCAGGTAATTTTGGCGCATTAACTTCAACTGCAAATAACTGAAATTAGAAATGAACAACGCATTCTTTTGCCCCCTACCCCTTTACACCCATGTCTTGTTTGAGAGGCAAAAGGCGCAGGCAATTGTGTATGTTGTTATGGGACATTAAACTTCAAACAAAGGGATGAAATTCAGCTGCAACAATGCGAAGAACAGTGGCATCCACGAAGCTTCCATCCAACTTGGCAGAGAAGACTGCATGGTTTGATATTATCCAAAAATAtggaatggattttttttttggccttccaatccttacaaaaacaaaacaaagactgcCCTGATCTCCAAGATCACATCTTttgaaattgttgtttttttatgtaaaggaCTGAATCATACGTGGATTTTTGAGGACAAAATTAAATCAAAGATGACTTTTGAAAAGACTTAATATTCCGCAGCTGCACCTCTTTGAAAACCTTCTGTGCGAACATCCGTTGCCAAGTGGGCCAGAGCTGGTGCTGTGGATGTTTTCATGTGCTGCCATTTCCAAGCAGTATTCTTTGGTAGGTTTTAATAAACAAGACTATGTAAAGCCGGCAATATAGATTCATTAGATCAGATGCTGATCGgaattatttacttaatatttttcattaaatgctttgttttaatattttattcggGATACATACGAACTATTCCAAACAGTTATTTATTTCCCCCAGACTTGTGTAAAATGTCCCCCACCCCCTATTTTCGTTGTTGaccctttttgttttgtttaattttgtattcTCATTTATAAAAGAGCACAAATCTACACGAGCTGACTTTGACAGTAGGTAATAAGGGTATATTTTGATGTGATGATTTGATTGTAATTTAATTTCAGTAGTGATTCCGTAAGAGATGATCGAGAACAATAAATTTGTTAGAATGAAACAAGATTCTGTGTTGTACCTAAGATAGctgtttgtaatttttaacatGCTCCCTGAGCTGTATTTATAgccaaatgcattttaaaatgatgaCTGCTGAATATCAATGTCCTTATGTTTTGACATGCAggttagattttttattattattatgccaacAACATAtacatgtttaaataaactaCAGCCATCTTATAAATATTTCaccaaatgcattttttattaaaatacataaattgaTCATTGTAACGTGACAATCGTTCAGGCCTTAATATAGGAAGCATACAGCAGTTCAACATTTCTAGAACTTCTGCCATATCTAGTAAGCCCTTTTTTCTCAAGACAAACCACCAAAAGTGTCATCGCTTTAAATTACTCTaatgtataattattttgttagCAGACTGAAATGTGTTTCTGTGACAATTAATAGAGATAACAACGTTAACTAAACCTCACGAGAGAAAGAACAGAAAAAGTTGAACGCTTAGACCCAATGATTACAGTGACACGCGTTTTTGTGTAATGTAGCCTACCCTTTTTTATAGCGTTCACGCCAAATGTCAAATCCTCATGCATTCTATCAGCCCGACAACTGTGTTTGCTTTTTTACCCTTTTTACACATGCAAAATTCAAATGTTCTCATATCTGCCCATCCATCTATACTGATAAACAAATACTAAAATAGCCCGTTTAAAAAATCTAGTTTATATTGATgcaagtcaaatattttgcttctgcatatattttattgcattttcgaTTAGGCAATGTTTTAAGAAATGGCCTAGCTGAATTTTAGAATATTTCATATTGTTCTCAACAACAGAAATGATCAACTCTGAATTTCGTATAAGCTTATTAGATCATTTGATCACCTATATGttgtgcagtttttaatttaactattttgttttaatttccacGCAAAAATATCTAGATTCTCTGTCTTGTTAAAATTAAGCATAATAGTTCTATCTGACATCACAACGGGTTACCTGTGGCCTCCAGTCTAAAAAATATAGGCATGTAATATAATTCATACCTTAAACTTTAGCTGGTATAAACCTGTCATAAAGTGACTTTATGCTATATACCTAATATTATTCACGTAAGCCAAATATTAGAGATGAAATTATTCGGAGCTAGGTCCCATAAATAAAACGGACGAAATATTTCGCAAGCGGGCGAAAAAGACAATGTGATGGCTTCAACTTTTTCTGGGGACGACTATTCAGCAAAACGCGCAATTCACTCCCTAACATTTGAATTTCGCGGATGAATTCCCATACACTAGTTGCTTAGCAACTAAATTCAATCAATGTTATAGAATCCCCTCCTCTTTGTCCTTAATAATAAGAGTTGATGTCTAACtttaaaactaattttgtatGAGTTTAATAAATCCAGAGTAGGCTATATGgtatacatttaaaacataacaAATATTTCGAGAAGGAAAacgtgggagaaaaaaaaatatttgcggTTGATAGGTTAAATTAAGATGTAAATATCGCGATCCTTTGAAGCATTAATTATTAAGCAGCCTTCAGGTTTAAAAAAGGTAATCGACAAAAAACATGTCCAATGCCATGCGTTATTTTCAGTGTTTGCGTGTCATAGATATAAATAGCAATATTTCCTAAAAAGTATATCATTATATTTAATAGCtagatatatttaatatatttaaatatatgattaTATTTAACAGTTACATAGCTTTCAGTACAGGCCAGTAGGCCTATACAAGAAGGCCTGAAATATGTTCAGTATCAGATGACATAAGCTGCACTAAACTCCATAGTGTAAGTCACATGACTTTCGGCCCACGTGTTCAGATGTATCCACTACTGATAAAATACTTGCATGCATATACTATGGAAGTAATTGAGggagaaattaaattatttgaatGGATATAATTGAAAATCCCGTTCAAGAGAAAAGTTTTAGACCGTTTTAGAGCAACATAGACTATATATTCAGACAATTGGAGGTTCCGTCATAAATAAGCGATAAATGCTCGTGTACGTGCAGCAACATTTAAAACCTTTTCTACCACCATGATTTAgcccaaattataataatatcctTGCATTTCAGCTTGTAAAATTACATCTTGCCAAACCTTGCTAGAGAAATTAAATTGTATCACTGTACAATAACTTCGGCTATCAAATACAATGGTTACTCTAGAAATTCTAAGTAACAAtaactatatttgaatatattcaataattatgTATATACCTTCTGAAAATACTGAACATGCTTCAACATGAACTAAACAGTCTTGCAATATGGTCTCGAATGGCTCGCTTGTGTTACGCGAAATAAACTTTTCCACACAAAACAATTgcagtaaatgaaaataataattatataataataataataacaataataatatattcacaATGGAAATAAAGTTTGTACGATACTTTCGTTCTATACTGTtcataaaagtttatttaactcatTAGCTCAATAGATTTTTGACGACGtgtaattttaaaaaggaaatcaGCCTGGCGGACACCCATAAAGTTATGTGctataaatacagaaatattaataataataataataataagaagaagaagaagaatccaAAGTTGTATCCAAGACATTACATCGCACAGAATATCACAGCAACCAAGAGCAGCCATACTTTTTACTTAAAATTCACAACGTTAATTACCGTTAAACAATGTTGAAGTAATCGATGAGTTTTTAGGACTAGTTTGCAGTCTATTTTTAGATGAAGAGAAATAGGCCACGGTATTCCCGTTTTCAATTTTAACTTGTTTCTTTCAGTCTCTTAACCCCTCGTGCTGTGCACATTCATAATGCTCTTACATGGGACAGTTCTCAGTGGGGAGACGTCCTCCAGACCGCCTTTGTTAATCCATGTTCTATTGTCACCATGTTGGTAATAAACAGCAGAACTCATTGTATCATTTAAACCTCTGTATTGTTCTAATCCAAAATCACAGCATGACAAAATCCTGTCATTATATGCGTCATTtgcctttaatttatttatgctgcAAATAAGAGAATAATTTTTGCTTCTGATAGACTGAGGTCGTTTTCTATTTCTTTATTCACTTTTTCTCTTGtggtttaaaaatagaaaaacaaaaaagaaatagtcAGACTCTTAACACTAGGAAATGTTCAGTACGCGCAAGTAAAATTAAGTTTCGGGAATTTTTAGTAGCCATGCATTTCTTGTAATTTACATATACATTTGCATACTCCTAAAATATAGCTCTACACATTATCTGCGTGATTAATGCAGAAagtgccaataataataatgatttacaataataataataataataatgataataaataaataaataaatacataataatgataatataaatgaataataataataacaacaacaaagtagtaatagtagttttTACAGCTTATTCTCAAGTAGCaatagtttattttgtatttgcttTAACTAAATTCacgtaaaaatgtaaacaaatcctAAATGAAAAACAGGTTCCAGAGAACACAAGACACAACCAACGCACAGACTAACTCTTCAGCAGCCGCGGCGTGTCATAAGGCCCTTAGAAGTCCACGCAAGTCCCCAGTTGTGCTGTCTGGAGGACTCGccattctccctctctctctctctctttccctctggAGACCCACTGTAAACGCCGTTCATGTTCAGCGGGCGCAGGTGCTGCTCCCTCTGCAAACCACAGATTACATTTCCATCACATGCCTCCTGAAGTCATGTGAAACAATAACCAGACACATTTACTCAATACTCAAGACACACCAAAGCCACATATGGGGTGTTTTTTGTAAAGTTGCAACATTTTTACCAAACATATTTAcacgtatatttatatattattttattgaccaTTCGTTTtatttgtggtgttttggtgtgtCTTAGATCTAATTAATATCATCCATTGTATAAGTAATTGTATCAGGCTACTGTAGAGTACCAGTCTCTTTAGGCAGATAATAGTGCAG

Function

symbol description
pou3f3b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system; neural rod; otic vesicle; pronephric duct; and spinal cord neural tube. Human ortholog(s) of this gene implicated in X-linked deafness 2. Orthologous to several human genes including POU3F3 (POU class 3 homeobox 3).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-140 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within brain development and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system; neural rod; otic vesicle; pronephric duct; and spinal cord neural tube. Human ortholog(s) of this gene implicated in X-linked deafness 2. Orthologous to several human genes including POU3F3 (POU class 3 homeobox 3).

Ensembl:

ensembl_id ENSDARG00000095896

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062511 False 3403 mRNA 0.46 1 14949950 14953352
TCONS_00062512 True 6608 lncRNA 0.38 2 14950471 14957388

Neighbor

gene id symbol gene type direction distance location
XLOC_031926 tmem182b coding upstream 637339 14301214 ~ 14312611 (+)
XLOC_031924 ptprnb coding upstream 962211 13920479 ~ 13987739 (+)
XLOC_031925 dre-mir-153b coding upstream 968858 13980945 ~ 13981092 (+)
XLOC_031923 dnpep coding upstream 1029556 13896264 ~ 13920394 (+)
XLOC_031922 tmem198b coding upstream 1079792 13779857 ~ 13870158 (+)
XLOC_031928 mrps9 coding downstream 23373 14980761 ~ 15029092 (+)
XLOC_031929 dph3 coding downstream 170119 15127507 ~ 15131196 (+)
XLOC_031930 nck2b coding downstream 187735 15145123 ~ 15246534 (+)
XLOC_031931 si:ch73-23l24.1 coding downstream 293284 15250672 ~ 15259419 (+)
XLOC_031932 ecrg4b coding downstream 311297 15268685 ~ 15300140 (+)
XLOC_031917 NA non-coding upstream 1601714 13344675 ~ 13348236 (+)
XLOC_031915 NA non-coding upstream 1682807 13260082 ~ 13267143 (+)
XLOC_031897 AL929243.2 non-coding upstream 3175218 11774617 ~ 11774732 (+)
XLOC_031889 BX548046.3 non-coding upstream 3931418 11018416 ~ 11018532 (+)
XLOC_031933 NA non-coding downstream 348377 15305765 ~ 15308585 (+)
XLOC_031935 CR956630.1 non-coding downstream 586667 15544055 ~ 15544170 (+)
XLOC_031937 CR759882.1 non-coding downstream 938246 15895634 ~ 15902635 (+)
XLOC_031938 CR847983.1 non-coding downstream 981233 15938621 ~ 15940105 (+)
XLOC_031939 NA non-coding downstream 1033547 15990935 ~ 15993964 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014334 LOC107748535,LOC108247996,LOC104928562,LOC103473625 coding CM030128.1 CM030128.1 9914125 ~ 9916789 (+)