XLOC_036989 (wnt6b)


Basic Information

Item Value
gene id XLOC_036989
gene name wnt6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 11281969 ~ 11341315 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072811
tataatataatataatataatataatataatataatagttacAGTATTTTGTTCTATAAATtagcaataaatatgtttaatatatttgtttaatataattaattaatacattttattaatttatgtttaagcatagctattattaaatattcttCTATTGTTTAAATATCTGAATTAATCACCATGCTTTAAAAAAGCGGTCCTTTAAAAAACATCACAGCACATTCATAATGCGTTGTGCATTACCTGACCTAATCCTTCAGAAACTGTAGGTCAGaaccgttttttttttcctgcatgaCAAGGTTTCTGACTCAAGCCCCGGGCGACGTCACTGCATGTGAGATGAGTTCTGAGTCTCTTCCAgcaccaaaaagaaaaaaaaaagaaaaaaaaagtctccaTCTGAGAGCAGGAAAAAGCTTGACGAGACGATCACGAAATGCCTTCGTCTACCTGTGTAGATCGGGATGAGCTCAGGAGCGCTCGCAACAGGGCGCGCGCGCACAGGTTCAGCACATGGCACTCAGATCAACACTCCTGCGCCTCACGAGAACATCTAAACAGCTTACATTCCGCGCGgaaacactttttaaaacttcTGGCATTTTAGTAGTTCAGGAGGTTTGACTGCATTCCACCAATCTCGAGATCTAAGTACGCTTTTGACTggatatatttttttcctcactTGAGCTGGATGAAGGTGTCCCAGGAGCAAGAAAGAAGATGCTGACCACTTTACAAGCGGATTTTGCGTTCTCTCTGTGTGGAAGTGTATTGGTATCATTCAAGGGTGCTGAATCGCCTTAGAAATTGTCAAACTTCCGAGCCTCTTTCATCACTGAACTGGCATCAGACCTACATTATTGTTCTTCGAGGGGCATCAGACCATGACGATTCCACTTTCCAGAACGCAGCTTGCCCTCTTCTTCATCCTCCTTTGTCCGGTCAACATAATCGGGCTCTGGTGGGCAGTGGGGAGTCCCTTGGTCATGGACCCGAATAGCATTTGCAGGAAGACCAAACGTCTGGCGGGCAAGCAGGCCGAACTCTGCCAGACCCAGCCGGAGATTGTTAACGAAGTCGCCAAGGGTGCCAAGCTGGGCGTACGGGAATGTCAGTACCAGTTTCGCTTTCGACGCTGGAACTGTACCAGCCAGAACAAGTACTTTGGCAAAATTCTTCAACAAGACATCCGCGAGACGGCGTTTGTGTATGCCATCACAGCAGCAGGAGTAACACATGCAGTGACGCAGGCCTGCAGTATGGGGGAGCTTCTGCAGTGTGGCTGCGAGGCCACACGGAGCAGAGGACCACCGCCGCGACTGGCCAGCATGGGGCCTACTGAGGGGGTCAAGTGGGAGTGGGGCGGCTGTGGGGACGACGTGGAGTTCGGCTATGAGAAGTCCAAGCAGTTCATGGATGCCAGACGGAGGAAGGGCAAGAGTGACATACGTACACTAATAGATCTACACAATAACGAGGCTGGACGACTGGCGGTGAAGAATTATATGAGGACTGAATGTAAATGTCACGGACTGTCTGGCTCATGCACTCTGAGGACCTGCTGGAAGAAAATGCCTCACTTCCGCGAGGTGGGCGACCGGCTGTTGGAGCGCTTCAACGGGGCATCCAAAGTCATGGGTGGGAATGACGGAAAGACTCTCATCCCGGTCGGGCAGAACATCAAACCTCCGGACAAGCAAGATCTCATTTACTCGGCCGAGTCACCAGACTTCTGCTTGCCCAACCGGAAGACGGGTTCCTTGGGCACACGCGGGAGGACGTGCAACAGCACGGCGCTGGACGTCAGCGGATGTGACCTTCTGTGTTGCGAACGAGGTCACCGGGACGAGACGGTGGTCCTGGAGGAAAACTGTCTCTGCCGGTTCCACTGGTGCTGTGTTGTCCAGTGTAAAAAGTGCTTGGTCAGGAAGGAACTGAGTTTGTGTCAGTAA
>TCONS_00072812
GGCAGTGGGGAGTCCCTTGGTCATGGACCCGAATAGCATTTGCAGGAAGACCAAACGTCTGGCGGGCAAGCAGGCCGAACTCTGCCAGACCCAGCCGGAGATTGTTAACGAAGTCGCCAAGGGTGCCAAGCTGGGCGTACGGGAATGTCAGTACCAGTTTCGCTTTCGACGCTGGAACTGTACCAGCCAGAACAAGTACTTTGGCAAAATTCTTCAACAAGACATCCGCGAGACGGCGTTTGTGTATGCCATCACAGCAGCAGGAGTAACACATGCAGTGACGCAGGCCTGCAGTATGGGGGAGCTTCTGCAGTGTGGCTGCGAGGCCACACGGAGCAGAGGACCACCGCCGCGACTGGCCAGCATGGGGCCTACTGAGGGGGTCAAGTGGGAGTGGGGCGGCTGTGGGGACGACGTGGAGTTCGGCTATGAGAAGTCCAAGCAGTTCATGGATGCCAGACGGAGGAAGGGCAAGAGTGACATACGTACACTAATAGATCTACACAATAACGAGGCTGGACGACTGGCGGTGAAGAATTATATGAGGACTGAATGTAAATGTCACGGACTGTCTGGCTCATGCACTCTGAGGACCTGCTGGAAGAAAATGCCTCACTTCCGCGAGGTGGGCGACCGGCTGTTGGAGCGCTTCAACGGGGCATCCAAAGTCATGGGTGGGAATGACGGAAAGACTCTCATCCCGGTCGGGCAGAACATCAAACCTCCGGACAAGCAAGATCTCATTTACTCGGCCGAGTCACCAGACTTCTGCTTGCCCAACCGGAAGACGGGTTCCTTGGGCACACGCGGGAGGACGTGCAACAGCACGGCGCTGGACGTCAGCGGATGTGACCTTCTGTGTTGCGAACGAGGTCACCGGGACGAGACGGTGGTCCTGGAGGAAAACTGTCTCTGCCGGTTCCACTGGTGCTGTGTTGTCCAGTGTAAAAAGTGCTTGGTCAGGAAGGAACTGAGTTTGTGTCAGTAA

Function

symbol description
wnt6b Predicted to enable cytokine activity and frizzled binding activity. Predicted to be involved in canonical Wnt signaling pathway; cell fate commitment; and neuron differentiation. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in eye. Orthologous to human WNT6 (Wnt family member 6).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005109 frizzled binding molecular_function
GO:0005125 cytokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-513 Predicted to enable cytokine activity and frizzled binding activity. Predicted to be involved in canonical Wnt signaling pathway; cell fate commitment; and neuron differentiation. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in eye. Orthologous to human WNT6 (Wnt family member 6).

Ensembl:

ensembl_id ENSDARG00000073935

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072811 False 1961 mRNA 0.48 4 11281969 11341315
TCONS_00072812 True 988 mRNA 0.56 3 11293830 11341315

Neighbor

gene id symbol gene type direction distance location
XLOC_036988 asic4a coding upstream 52404 11034314 ~ 11229565 (+)
XLOC_036987 NA coding upstream 343500 10936773 ~ 10938469 (+)
XLOC_036986 gmppaa coding upstream 501309 10770880 ~ 10780660 (+)
XLOC_036985 NA coding upstream 521856 10737086 ~ 10760113 (+)
XLOC_036984 dars1 coding upstream 522456 10699038 ~ 10759513 (+)
XLOC_036990 wnt10a coding downstream 38467 11379782 ~ 11409691 (+)
XLOC_036991 CR847976.1 coding downstream 106462 11447777 ~ 11447909 (+)
XLOC_036992 cdk5r2b coding downstream 190710 11532025 ~ 11534622 (+)
XLOC_036993 si:dkey-69o16.5 coding downstream 246314 11587629 ~ 11595736 (+)
XLOC_036994 tmem41aa coding downstream 1103179 12444494 ~ 12455521 (+)
XLOC_036982 NA non-coding upstream 717023 10562638 ~ 10564946 (+)
XLOC_036980 BX936345.1 non-coding upstream 937989 10343864 ~ 10343980 (+)
XLOC_036979 NA non-coding upstream 1124422 10155978 ~ 10157547 (+)
XLOC_036995 NA non-coding downstream 1120304 12461619 ~ 12469043 (+)
XLOC_036996 CR752651.1 non-coding downstream 1486690 12828005 ~ 12828120 (+)
XLOC_037004 CR407547.1 non-coding downstream 2107214 13448529 ~ 13448648 (+)
XLOC_037005 NA non-coding downstream 2127759 13469074 ~ 13471527 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000036_01274853_01288632 WNT6.S, WNT6B, WNT6 coding CI01000036 null 1274853 ~ 1289612 (+)