XLOC_036992 (cdk5r2b)


Basic Information

Item Value
gene id XLOC_036992
gene name cdk5r2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 11532025 ~ 11534622 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00072816
GTTGAGGCAAGCAATGCAGGACTGTCTTGCGGTCTCTACAGCAGAACAAGCGGAGGGGCTGTCTGACTGCACTGGAATTCACTTTCTGATGGACAGTCAGTCCACCAGCTTGTTTTACTAACCAAATGGAGCAACACTTGTGATCTGATAAACGCTCGAGCTCGACGTTTCGGCGCGCGCGCGGGGCCGTATCGTAACGTTTTGTCGCGCGCTCTGCGTTATGGGGACCGTGCTTTCTATATCCCCGATAGCAACTAAAGGCTCCATTCTGGAAGAAGGAGACGACGAAGCCGATGGGAGAATAGAGAAAAGCCTTAAAAAGCAATCGGTGATCGTGTCCACGCTCACATTTAAGCGGTTAGTGACTGCGTCAAGTAAGAAAAAAAGTGCCAAGAAAGTAAACCCGAATCCTCTCCCGACGAGCAGCGAAAGTCAAGTCGAGCATCTGAACCAGGAGAACTCCAGGAAATCCCAACAGCCGACCAGCACTGAGCGGAAAACGAAAAATGGACCTCTCGCGGTGCCAATTCCCACGGTTCCTCCCCAGCAGGAGCAGGAACAGTGTACTCCGGCGGCGAAGCAACTGGTGTCGGTTCAGAAGCAGCCCAGCAGCCGGTCTCTCATCTCTCCCAGGCGCGTGGTCGTCCAGGCCTCCACTGGGGAACTGCTCCGGTGCTTGGGCGAATTTCTATGCAAACGCTGCTGCAAAATGAAGGAACTCACCCCGAATGAGGTCATCCTCTGGTTCCGAAATGTGGACAGGACTTTGCTTCTGCAGGGCTGGCAGGACCAAGGGTTCATTACGCCTGCCAACCTCGTGTTCGTCTATCTGCTCGTTAGGGAAACTGTGACCGATGATGTTGACAGTCCACGTGAACTCCACGGGACCTTTCTGACATGTCTGTATTTGGCGTATTCCTATATAGGCAACGAGATATCGTACCCTCTCAAGCCCTTCATGGTCGACACCAATAAGGACGTGTTTTGGGATCGTTCGCTTGATGTCATCGATAAACTGAGTGGCAAAATGCTGCAGATTAACATGGATCCGCACTTTTTCACAGAGGTTTTTCAAGACTTAAAAAACGAAGGAGATTATAAGAAGGATGCAAGCGAACTGGACCGCTGAGTGAGATCAAAGTCTGAGCGGAGATCAATTATTATTGATGTAATCTCTGCTTGTGTTGCACAATGAGCTGATTTATTAATGCTATTTAagacaatatttattttgttggcTTTGTTTTCAAGAGTATTAGTAGGCTACCTAAAAGCCGACATGGCTAGATGCAGCTAAATGcatgacatatttgtacctgTCATTCACTGTCATTCATAAAATGGGAAGGCACATTAACGTTTATTCTTATATAAATGGCAATGCTCTGTACTCGTTTCTCGGTTATCTGGGTCactatatcctcctgagacccccacaaacttgtttttttttaggcATATATAGTGTAGATAGGGTGGCCAGGTTTTTCAGATATTCCACAGTCATCAAAGTATAGGTAATAATCACTATATgcaatgtttacaaaaaaaacccaacaaatctattatattaatgaatatatattttagcgTTTCCCTGTGATGGAATGCGgcttaaagggcatccgctgcgtaaaacatgctggataagttggcggttcattccgctgtggcgacctcagattaataaagggactaagccgaaaagataacgaatgaatgaattaatatattaatttagtaAAACATTGCTAAACAAATGAGCAATGAACACTAATTGCCTTTTTTGAGGTAAATGTGACATGGTGGTGACGTTGTTTACAGTCTTTGTTATTGACGTCATTTCGCGGTTAAACACTGATTGAGGGATTATGTAAGACCTCATGCATTTCAGTTTTTATGCACTTAGAAAGTAGCCTATGATTCTTTAAAAAGTCTCGGAAGTTAATTTAGGTGTTTCCACAAAACACTACACATTAATCCACAAAGGAACtttgatttaaagtaatgtttgctTTTGAACGTTATTGACTACGTTTACTGGGTTATGACAGGAGATACTTGAAACTCTGAAATTCAGAGATTTTAGAAAACATAAAAGCACTAAAGGTAAGCACTAAAGATTTACCTGAAATGAAACTGTCCAGAAAAGGGATGTCTGGCCAACCCAGCACTATAGATCAAATTTACCTTTGTAGTTCTAAAGTacaaatgatttaattatattgGCAGCGTTATTACATATATGAAGTCTGTTTGAAACGTACGAAGCCTTAAAGGTCGTTAAAAACGGGGTTTTAGGAGGATAGAGCTACATTTGAAGAGCTGTGAATGGAACTATCCAAGGTGCTGACCCGTTTGTGCTCATGCTGCTGAATTGACAGGCCAATGCCTCCAGCCATTCTGAATGTAAAACTTGAATGCGTTTTCTCTTCATTGAGATGTTCTACTTGTGCCAATCCGTGACGGTTTTTGATTTAAATTGGTTTGAGAAGACTGAATAGATTGTGATTGGAGTTTACTTTCTATTCTGACATGATTTTTGTCAGTGCTTttgtttgaattaaataaaacccAGTCTGACTGGTTTTGTTGATG

Function

symbol description
cdk5r2b Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Predicted to be located in plasma membrane. Predicted to be part of protein kinase 5 complex. Orthologous to human CDK5R2 (cyclin dependent kinase 5 regulatory subunit 2).

GO:

id name namespace
GO:0016533 protein kinase 5 complex cellular_component
GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-251 Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Predicted to be located in plasma membrane. Predicted to be part of protein kinase 5 complex. Orthologous to human CDK5R2 (cyclin dependent kinase 5 regulatory subunit 2).

Ensembl:

ensembl_id ENSDARG00000078671

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00072816 True 2598 mRNA 0.43 1 11532025 11534622

Neighbor

gene id symbol gene type direction distance location
XLOC_036991 CR847976.1 coding upstream 84116 11447777 ~ 11447909 (+)
XLOC_036990 wnt10a coding upstream 122334 11379782 ~ 11409691 (+)
XLOC_036989 wnt6b coding upstream 190710 11281969 ~ 11341315 (+)
XLOC_036988 asic4a coding upstream 302460 11034314 ~ 11229565 (+)
XLOC_036987 NA coding upstream 593556 10936773 ~ 10938469 (+)
XLOC_036993 si:dkey-69o16.5 coding downstream 53007 11587629 ~ 11595736 (+)
XLOC_036994 tmem41aa coding downstream 909872 12444494 ~ 12455521 (+)
XLOC_036995 NA coding downstream 926997 12461619 ~ 12469043 (+)
XLOC_036996 CR752651.1 coding downstream 1293383 12828005 ~ 12828120 (+)
XLOC_036997 glb1l coding downstream 1312418 12847040 ~ 12869049 (+)
XLOC_036985 NA non-coding upstream 771912 10737086 ~ 10760113 (+)
XLOC_036982 NA non-coding upstream 967079 10562638 ~ 10564946 (+)
XLOC_036980 BX936345.1 non-coding upstream 1188045 10343864 ~ 10343980 (+)
XLOC_037004 CR407547.1 non-coding downstream 1913907 13448529 ~ 13448648 (+)
XLOC_037005 NA non-coding downstream 1934452 13469074 ~ 13471527 (+)
XLOC_037014 NA non-coding downstream 2577853 14112475 ~ 14117000 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000036_01388349_01389269 CDK5R2B coding CI01000036 null 1387188 ~ 1389670 (+)