csgalnact1b (LOC108265223)


Basic Information

Item Value
gene id csgalnact1b
gene name LOC108265223
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15442500 ~ 15452743 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925285.2
tcttgataGAGATATAGATGGATTTGGATGTTATGGATGGATGCGCTTGGTGATGTGGAAAGACTAAATCAACTTGAAGAAACATGGAAACTTGAAGATGCTTAAAGACATATGTTTGACGATAGAAATTCATTTTTAGAAATATGTTAAATGAGAAATAACTAAATATGAGCCACTACGCAAACCTGGCATTGAACAATTTCACTCATATGAGTAAAAGTAAACATTTGAGCTACTCCAggacatattaaaaatatatcctAAAATAGCCtggtaaaaaaaagtgcagcaatGCTGAAGAGATGGTTTGTGGGCATGATGGCCCGTACAAGACTTCTCCTTATGGTCGCATTTTGCTTTACACTATTCCTGTATAACCCAGACTGCAGAACTCAAAAACCAAGAAATCAAAACCAACAAATTTTGCTCAAAGAGACCATGGATGATATGAAATATCAAGCTTTGCTGCAAGAACATGAGGAACAATATCATCACTATACTGCAAGCCTAAGAAAGCAGATCTTCCATTTGAAATATGCTATCAGAGAGAAAAGACATCTCCAGAAGTCTGTGCAACAGGCTGCTATAATGCACCCAATGGAGCTGGAGGAAACACACAAGAGTAACTCAGAACTTGAGGTGTTCCTTCACGAGCAACTGCATCGTATGAAAAGTCATGTAGGCGTGAATATACCAAATGAGTATGCTGTGGTGCCATTGGAGACCTTTACACTTCACAGTGTCTATCAGCTTGATACCGGGCTCACAAAGCATCCTGTGCAAAAAACTCTTCGACGGGATATGGCTGGGGCATTAGAAGCAGCTCTGCATATCCTTAATGGTCCTAAAGATAAGGATGACCCTCGGTATCGTAAGATATACTCACCACGTGATTTCTTTGAGGGAATTTTTCATTCTGAAAGAGATAAAGGATCTCTGTATGATCTCACATTCAAAGACAATACTTCTCTGGACTTCAGGAGGCTGGAGCTCTTTCGGCCATTTGCACCTCTGCAAAATATGAAGGAAGAAGCAATTGACACATCCAGaatgctaataaatataattgtgCCATTGGCCACGAGGGTGGACACATTTCAACAATTCATGAACAATTTTAGGGAAATTTGTGTTGAGGATGAAAGGATCCATCTTACTGTAGTGAATTTTGGAACAGAGAAGATAAATGAAGTAAGAAGAATTATAGACACTGCTGCAAGGAGAATGAGATCAAGGAACTTCACTCTAATCCACCTAAATGAGAAGTTTTCCAGAGGACGAGCTTTGAACATAGGAGCTCGTGCCTGGAAGAAGAGCAATGTCCTCCTATTTTTCTGTGATATCGACATCCACTTTACTGTTGATTTCCTAAACTCCTGCCGCATTAACTCCCAACCTGGTAAAAGAGTCTTCTACCCCATACCTTTTAGCCAGTACAATCCAGATGTAATTTATGGTGACCATATACCTACTCTTGAAAAACAGCAGGTAATCAGTAAAAACACTGGATTCTGGAGAGATTTTGGCTTTGGAATAACATGCCAGTATTTGTCAGATTTCATCAACATAGGAGGTTTTGAAGTAACTATCAAATCTTGGGGAAAAGAAGATTTGCACCTGTACAGAAAATACCTGCACAGCAATCTTATGGTAGTACGTGCACCTTCACGAGAACTCTTCCATATGTGGCATGAGACACCTTGTGCAGAAGACCTACCAACAGAATCTTTTAATGAGTGCATACAGACCAGAGCCATGAATGAGGCCTCTCACAGTCAGATGGGAAAACTGTTCTTTCACCAGCAAATAGACAATCATCTACATAAATACAATCAAACAGAAACCCAATGATAGTGGGGAAGACACTACACATACATGAGCAAAATATTTTATGCCATGAACAGTTTA
>XM_034306822.1
ATTtgatgcttttatttctgtacgATGTTGTTCctgttttgttaatttttttttttattcataatctaAACATATCTTTGAaagtcaaattccttggtgtAATGCATGTGCTAAACAACTCTGCTTTCATAGTTTTTAAGGGGGAGGAGTTTGCTGTAGAAGGCAGAACAGAGCAGGCACTCAGTAGCACACTGAGGCCTTTAGGGTACCTCACAGCAAATTAGGGCTCACATACAGACTTGCAGATACATAGTCATTTCAGGTTGCTTTAATATCAACACTAAGTCAGTCAAGTTCATAGAAGTTTATATGGATTAAGTGCTGACTTGCAGTGCAGATTATGCTAGTCAAAAGTGCAGCGAAAGGTACAGCACAGCAAGAGATATAGATGGATTTGGATGTTATGGATGGATGCGCTTGGTGATGTGGAAAGACTAAATCAACTTGAAGAAACATGGAAACTTGAAGATGCTTAAAGACATATGTTTGACGATAGAAATTCATTTTTAGAAATATGTTAAATGAGAAATAACTAAATATGAGCCACTACGCAAACCTGGCATTGAACAATTTCACTCATATGAGTAAAAGTAAACATTTGAGCTACTCCAggacatattaaaaatatatcctAAAATAGCCtggtaaaaaaaagtgcagcaatGCTGAAGAGATGGTTTGTGGGCATGATGGCCCGTACAAGACTTCTCCTTATGGTCGCATTTTGCTTTACACTATTCCTGTATAACCCAGACTGCAGAACTCAAAAACCAAGAAATCAAAACCAACAAATTTTGCTCAAAGAGACCATGGATGATATGAAATATCAAGCTTTGCTGCAAGAACATGAGGAACAATATCATCACTATACTGCAAGCCTAAGAAAGCAGATCTTCCATTTGAAATATGCTATCAGAGAGAAAAGACATCTCCAGAAGTCTGTGCAACAGGCTGCTATAATGCACCCAATGGAGCTGGAGGAAACACACAAGAGTAACTCAGAACTTGAGGTGTTCCTTCACGAGCAACTGCATCGTATGAAAAGTCATGTAGGCGTGAATATACCAAATGAGTATGCTGTGGTGCCATTGGAGACCTTTACACTTCACAGTGTCTATCAGCTTGATACCGGGCTCACAAAGCATCCTGTGCAAAAAACTCTTCGACGGGATATGGCTGGGGCATTAGAAGCAGCTCTGCATATCCTTAATGGTCCTAAAGATAAGGATGACCCTCGGTATCGTAAGATATACTCACCACGTGATTTCTTTGAGGGAATTTTTCATTCTGAAAGAGATAAAGGATCTCTGTATGATCTCACATTCAAAGACAATACTTCTCTGGACTTCAGGAGGCTGGAGCTCTTTCGGCCATTTGCACCTCTGCAAAATATGAAGGAAGAAGCAATTGACACATCCAGaatgctaataaatataattgtgCCATTGGCCACGAGGGTGGACACATTTCAACAATTCATGAACAATTTTAGGGAAATTTGTGTTGAGGATGAAAGGATCCATCTTACTGTAGTGAATTTTGGAACAGAGAAGATAAATGAAGTAAGAAGAATTATAGACACTGCTGCAAGGAGAATGAGATCAAGGAACTTCACTCTAATCCACCTAAATGAGAAGTTTTCCAGAGGACGAGCTTTGAACATAGGAGCTCGTGCCTGGAAGAAGAGCAATGTCCTCCTATTTTTCTGTGATATCGACATCCACTTTACTGTTGATTTCCTAAACTCCTGCCGCATTAACTCCCAACCTGGTAAAAGAGTCTTCTACCCCATACCTTTTAGCCAGTACAATCCAGATGTAATTTATGGTGACCATATACCTACTCTTGAAAAACAGCAGGTAATCAGTAAAAACACTGGATTCTGGAGAGATTTTGGCTTTGGAATAACATGCCAGTATTTGTCAGATTTCATCAACATAGGAGGTTTTGAAGTAACTATCAAATCTTGGGGAAAAGAAGATTTGCACCTGTACAGAAAATACCTGCACAGCAATCTTATGGTAGTACGTGCACCTTCACGAGAACTCTTCCATATGTGGCATGAGACACCTTGTGCAGAAGACCTACCAACAGAATCTTTTAATGAGTGCATACAGACCAGAGCCATGAATGAGGCCTCTCACAGTCAGATGGGAAAACTGTTCTTTCACCAGCAAATAGACAATCATCTACATAAATACAATCAAACAGAAACCCAATGATAGTGGGGAAGACACTACACATACATGAGCAAAATATTTTATGCCATGAACAGTTTA

Function

NR:

description
PREDICTED: chondroitin sulfate N-acetylgalactosaminyltransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925285.2 False 1908 mRNA 0.39 7 15443927 15452743
XM_034306822.1 True 2279 mRNA 0.39 8 15442500 15452743

Neighbor

gene id symbol gene type direction distance location
spinb LOC108265781 coding upstream 2813 15418464 ~ 15439687 (+)
lrrc2 lrrc2 coding upstream 39776 15398272 ~ 15402724 (+)
LOC113531612 nudt12 coding upstream 78476 15357916 ~ 15364024 (+)
LOC117595717 nudt12 coding upstream 85023 15351226 ~ 15357477 (+)
prdm6 prdm6 coding upstream 165560 15246938 ~ 15276940 (+)
LOC113535909 LOC103035969,LOC108265984,LOC108430321 coding downstream 1305 15454048 ~ 15463883 (+)
LOC113533162 NA coding downstream 20933 15473676 ~ 15482696 (+)
prxl2c NA coding downstream 446835 15899578 ~ 15905498 (+)
cdc14b cdc14b,LOC108265480 coding downstream 454786 15907529 ~ 15920012 (+)
znf367 znf367,LOC107704585,LOC107726881,LOC107568105 coding downstream 470547 15923290 ~ 15927646 (+)
G133342 NA non-coding upstream 16128 15425189 ~ 15426372 (+)
G133330 NA non-coding upstream 40738 15401446 ~ 15401762 (+)
G133307 NA non-coding upstream 78529 15354461 ~ 15363971 (+)
G133306 NA non-coding upstream 98469 15343754 ~ 15344031 (+)
G133260 NA non-coding upstream 143113 15299184 ~ 15299387 (+)
G133386 NA non-coding downstream 144665 15597408 ~ 15606339 (+)
LOC117597798 NA non-coding downstream 177710 15630453 ~ 15640958 (+)
G133617 NA non-coding downstream 519117 15971860 ~ 15972109 (+)
G133635 NA non-coding downstream 590097 16042840 ~ 16043039 (+)
G133721 NA non-coding downstream 711943 16164686 ~ 16170597 (+)
srp19 srp19 other upstream 57676 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 459616 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 462596 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1119050 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 1419813 13949937 ~ 14022687 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 549318 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 950005 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 1127514 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 1263390 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 1407233 16859976 ~ 16868768 (+)

Expression


Co-expression Network