spinb (LOC108265781)


Basic Information

Item Value
gene id spinb
gene name LOC108265781
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15418464 ~ 15439687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930890.2
GATTGGGCCTTGGACAGCCCTGGTCTAGAGGGACAGAGCAGGTCATTCACGCGCATGCGCGTGATCACACGCTGGGGAAGCCGCTTTTCTTGAGTTTGTGTACGCGCAAATTCAACATTGTCTGCATAACATTTGTTTCCACACGGCTATAATAGCAACTCAAATGCTGCATTTCATTAAGATGGAAAAGGAGCGAAAACCATAAGGTGGAGGTCAACGCTTTAAAGAGCCATTTACCGGCTGCGCAATATCTCCCACAAGAAAGAATTTGGCTTGGCATCTCTGAGTAAATGTTTGGGACAACTTCAGGTCCACACCACTCCAGAGGAGCAGATGGTGTATGTGTGAGCAGGACgacaatgaagaaaaaaggtTCACACAAGCATAAGCACAGGCATTATGTGGGGTTAAGCAGGTCAATAGTTCCACCTGTACGAAACATTGTTGGCTGCAGGATAAAGCACAAGTGGAAGGAGGATTGTTACAGTCCAATATCACACTGGACTGGGACAGTACTAGACCAGATTCCAGTAAACCCTTCCCTCTACCTTATTAAGTATGATGGCTTCGATTGTGTATATGGCCTGGAGATTCTCAGAGATGACAGGGTTCAAGGTCTTGAGATCTTCACTGATAAAATTgCTCCATATCGAATAAGTGATGCTCGTCTAGCTGAGCAGATGTTGGGTCGAGCTGTGGAGCACCAGTTTGAGATGGACGATGGATCAAAGAATGGCTGGAAAGGGCTGGTGCTTGCCAGAACTCCCATCATGCCCACATGGTTTTTCATTACTTATGAGAAGGACCCTGTTCTTTACATGTACCAACTTCTTGAGGACTATAAAGAAGGTGACCTTCAAATTCTCCCAGAGTCAGAAGACCTCACTGAAGtgaaagaggctggtgaagctTTTGAAAGTCTTGTTGGAAAGCAAGTGGAATATGCGAGTGAGAATGGCACACAGAAGACCGGCACAATTATTCATCAGGTTCAGGCTAAGCCATCCGTCTACTTTATTAAATTTGATGATGACTATCACATCTATGTTTATGACATGGTTTGAGTTTAGACATTTGGCACTATGATACAGTGAACATTTCTTGCTTTTTAATGCTGTTTCTCTGAATGTTTTGCATAGGAAACCTTTTCAGTTAATGCTTAATTTGGCTGTATAAAAGTTTTGCTGTTGTGAGGCTGCCATTAATGTCATGAAGTCGTTTTCCTATTAATTATTTGTGACATTGGCTGGTGTCTTGCTTGCTCCCTTGTGGACGTGCAGCCATCAGCAACTTGATTGGttgttgatgtttattttgttagttTTTCATTTGCTTAAGTATGTTGCTGCTATGGTGActcattctgtctttttgtgCCCTTACACTAAGTATGTTGTTGCCTTTATGCAAGGCATAAAGCAACCATATGTGCTGAATTGTTTtctattaaaggaataaaaaaatcaaa
>XM_026930898.2
GGATTGGGCCTTGGACAGCCCTGGTCTAGAGGGACAGAGCAGGTCATTCACGCGCATGCGCGTGATCACACGCTGGGGAAGCCGCTTTTCTTGAGTTTGTGTACGCGCAAATTCAACATTGTCTGCATAACATTTGTTTCCACACGGCTATAATAGCAACTCAAATGCTGCATTTCATTAAGATGGAAAAGGAGCGAAAACCATAAGGTGGAGGTCAACGCTTTAAAGAGCCATTTACCGGCTGCGCAATATCTataaaaataacaaactgaTCTTCTACATATTCATTGTTTGTGTGCGATATGAACACTTTCAACACTTTCAAAAATCGCCACAGTAGGACTGAAGAAACAATGAGCCAATTACCCACAAGAAAGAATTTGGCTTGGCATCTCTGAGTAAATGTTTGGGACAACTTCAGGTCCACACCACTCCAGAGGAGCAGATGGTGTATGTGTGAGCAGGACgacaatgaagaaaaaaggtTCACACAAGCATAAGCACAGGCATTATGTGGGGTTAAGCAGGTCAATAGTTCCACCTGTACGAAACATTGTTGGCTGCAGGATAAAGCACAAGTGGAAGGAGGATTGTTACAGTCCAATATCACACTGGACTGGGACAGTACTAGACCAGATTCCAGTAAACCCTTCCCTCTACCTTATTAAGTATGATGGCTTCGATTGTGTATATGGCCTGGAGATTCTCAGAGATGACAGGGTTCAAGGTCTTGAGATCTTCACTGATAAAATTgCTCCATATCGAATAAGTGATGCTCGTCTAGCTGAGCAGATGTTGGGTCGAGCTGTGGAGCACCAGTTTGAGATGGACGATGGATCAAAGAATGGCTGGAAAGGGCTGGTGCTTGCCAGAACTCCCATCATGCCCACATGGTTTTTCATTACTTATGAGAAGGACCCTGTTCTTTACATGTACCAACTTCTTGAGGACTATAAAGAAGGTGACCTTCAAATTCTCCCAGAGTCAGAAGACCTCACTGAAGtgaaagaggctggtgaagctTTTGAAAGTCTTGTTGGAAAGCAAGTGGAATATGCGAGTGAGAATGGCACACAGAAGACCGGCACAATTATTCATCAGGTTCAGGCTAAGCCATCCGTCTACTTTATTAAATTTGATGATGACTATCACATCTATGTTTATGACATGGTTTGAGTTTAGACATTTGGCACTATGATACAGTGAACATTTCTTGCTTTTTAATGCTGTTTCTCTGAATGTTTTGCATAGGAAACCTTTTCAGTTAATGCTTAATTTGGCTGTATAAAAGTTTTGCTGTTGTGAGGCTGCCATTAATGTCATGAAGTCGTTTTCCTATTAATTATTTGTGACATTGGCTGGTGTCTTGCTTGCTCCCTTGTGGACGTGCAGCCATCAGCAACTTGATTGGttgttgatgtttattttgttagttTTTCATTTGCTTAAGTATGTTGCTGCTATGGTGActcattctgtctttttgtgCCCTTACACTAAGTATGTTGTTGCCTTTATGCAAGGCATAAAGCAACCATATGTGCTGAATTGTTTtctattaaaggaataaaaaaatcaaa
>XM_026930904.2
GGATTGGGCCTTGGACAGCCCTGGTCTAGAGGGACAGAGCAGGTCATTCACGCGCATGCGCGTGATCACACGCTGGGGAAGCCGCTTTTCTTGAGTTTGTGTACGCGCAAATTCAACATTGTCTGCATAACATTTGTTTCCACACGGCTATAATAGCAACTCAAATGCTGCATTTCATTAAGATGGAAAAGGAGCGAAAACCATAAGGTGGAGGTCAACGCTTTAAAGAGCCATTTACCGGCTGCGCAATATCTCCCACAAGAAAGAATTTGGCTTGGCATCTCTGAGTAAATGTTTGGGACAACTTCAGGTCCACACCACTCCAGAGGAGATGGTGTATGTGTGAGCAGGACgacaatgaagaaaaaaggtTCACACAAGCATAAGCACAGGCATTATGTGGGGTTAAGCAGGTCAATAGTTCCACCTGTACGAAACATTGTTGGCTGCAGGATAAAGCACAAGTGGAAGGAGGATTGTTACAGTCCAATATCACACTGGACTGGGACAGTACTAGACCAGATTCCAGTAAACCCTTCCCTCTACCTTATTAAGTATGATGGCTTCGATTGTGTATATGGCCTGGAGATTCTCAGAGATGACAGGGTTCAAGGTCTTGAGATCTTCACTGATAAAATTgCTCCATATCGAATAAGTGATGCTCGTCTAGCTGAGCAGATGTTGGGTCGAGCTGTGGAGCACCAGTTTGAGATGGACGATGGATCAAAGAATGGCTGGAAAGGGCTGGTGCTTGCCAGAACTCCCATCATGCCCACATGGTTTTTCATTACTTATGAGAAGGACCCTGTTCTTTACATGTACCAACTTCTTGAGGACTATAAAGAAGGTGACCTTCAAATTCTCCCAGAGTCAGAAGACCTCACTGAAGtgaaagaggctggtgaagctTTTGAAAGTCTTGTTGGAAAGCAAGTGGAATATGCGAGTGAGAATGGCACACAGAAGACCGGCACAATTATTCATCAGGTTCAGGCTAAGCCATCCGTCTACTTTATTAAATTTGATGATGACTATCACATCTATGTTTATGACATGGTTTGAGTTTAGACATTTGGCACTATGATACAGTGAACATTTCTTGCTTTTTAATGCTGTTTCTCTGAATGTTTTGCATAGGAAACCTTTTCAGTTAATGCTTAATTTGGCTGTATAAAAGTTTTGCTGTTGTGAGGCTGCCATTAATGTCATGAAGTCGTTTTCCTATTAATTATTTGTGACATTGGCTGGTGTCTTGCTTGCTCCCTTGTGGACGTGCAGCCATCAGCAACTTGATTGGttgttgatgtttattttgttagttTTTCATTTGCTTAAGTATGTTGCTGCTATGGTGActcattctgtctttttgtgCCCTTACACTAAGTATGTTGTTGCCTTTATGCAAGGCATAAAGCAACCATATGTGCTGAATTGTTTtctattaaaggaataaaaaaatcaaa
>XM_026930912.2
GGATTGGGCCTTGGACAGCCCTGGTCTAGAGGGACAGAGCAGGTCATTCACGCGCATGCGCGTGATCACACGCTGGGGAAGCCGCTTTTCTTGAGTTTGTGTACGCGCAAATTCAACATTGTCTGCATAACATTTGTTTCCACACGGCTATAATAGCAACTCAAATGCTGCATTTCATTAAGATGGAAAAGGAGCGAAAACCATAAGGTGGAGGTCAACGCTTTAAAGAGCCATTTACCGGCTGCGCAATATCTataaaaataacaaactgaTCTTCTACATATTCATTGTTTGTGTGCGATATGAACACTTTCAACACTTTCAAAAATCGCCACAGTAGGACTGAAGAAACAATGAGCCAATTACCCACAAGAAAGAATTTGGCTTGGCATCTCTGAGTAAATGTTTGGGACAACTTCAGGTCCACACCACTCCAGAGGAGATGGTGTATGTGTGAGCAGGACgacaatgaagaaaaaaggtTCACACAAGCATAAGCACAGGCATTATGTGGGGTTAAGCAGGTCAATAGTTCCACCTGTACGAAACATTGTTGGCTGCAGGATAAAGCACAAGTGGAAGGAGGATTGTTACAGTCCAATATCACACTGGACTGGGACAGTACTAGACCAGATTCCAGTAAACCCTTCCCTCTACCTTATTAAGTATGATGGCTTCGATTGTGTATATGGCCTGGAGATTCTCAGAGATGACAGGGTTCAAGGTCTTGAGATCTTCACTGATAAAATTgCTCCATATCGAATAAGTGATGCTCGTCTAGCTGAGCAGATGTTGGGTCGAGCTGTGGAGCACCAGTTTGAGATGGACGATGGATCAAAGAATGGCTGGAAAGGGCTGGTGCTTGCCAGAACTCCCATCATGCCCACATGGTTTTTCATTACTTATGAGAAGGACCCTGTTCTTTACATGTACCAACTTCTTGAGGACTATAAAGAAGGTGACCTTCAAATTCTCCCAGAGTCAGAAGACCTCACTGAAGtgaaagaggctggtgaagctTTTGAAAGTCTTGTTGGAAAGCAAGTGGAATATGCGAGTGAGAATGGCACACAGAAGACCGGCACAATTATTCATCAGGTTCAGGCTAAGCCATCCGTCTACTTTATTAAATTTGATGATGACTATCACATCTATGTTTATGACATGGTTTGAGTTTAGACATTTGGCACTATGATACAGTGAACATTTCTTGCTTTTTAATGCTGTTTCTCTGAATGTTTTGCATAGGAAACCTTTTCAGTTAATGCTTAATTTGGCTGTATAAAAGTTTTGCTGTTGTGAGGCTGCCATTAATGTCATGAAGTCGTTTTCCTATTAATTATTTGTGACATTGGCTGGTGTCTTGCTTGCTCCCTTGTGGACGTGCAGCCATCAGCAACTTGATTGGttgttgatgtttattttgttagttTTTCATTTGCTTAAGTATGTTGCTGCTATGGTGActcattctgtctttttgtgCCCTTACACTAAGTATGTTGTTGCCTTTATGCAAGGCATAAAGCAACCATATGTGCTGAATTGTTTtctattaaaggaataaaaaaatcaaa

Function

NR:

description
spindlin-Z-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930890.2 False 1468 mRNA 0.42 6 15418465 15439687
XM_026930898.2 True 1580 mRNA 0.42 7 15418464 15439687
XM_026930904.2 False 1466 mRNA 0.42 6 15418464 15439687
XM_026930912.2 False 1577 mRNA 0.42 7 15418464 15439687

Neighbor

gene id symbol gene type direction distance location
lrrc2 lrrc2 coding upstream 15740 15398272 ~ 15402724 (+)
LOC113531612 nudt12 coding upstream 54440 15357916 ~ 15364024 (+)
LOC117595717 nudt12 coding upstream 60987 15351226 ~ 15357477 (+)
prdm6 prdm6 coding upstream 141524 15246938 ~ 15276940 (+)
snx2 snx2 coding upstream 209382 15195053 ~ 15209082 (+)
csgalnact1b LOC108265223 coding downstream 2813 15442500 ~ 15452743 (+)
LOC113535909 LOC103035969,LOC108265984,LOC108430321 coding downstream 14361 15454048 ~ 15463883 (+)
LOC113533162 NA coding downstream 33989 15473676 ~ 15482696 (+)
prxl2c NA coding downstream 459891 15899578 ~ 15905498 (+)
cdc14b cdc14b,LOC108265480 coding downstream 467842 15907529 ~ 15920012 (+)
G133330 NA non-coding upstream 16702 15401446 ~ 15401762 (+)
G133307 NA non-coding upstream 54493 15354461 ~ 15363971 (+)
G133306 NA non-coding upstream 74433 15343754 ~ 15344031 (+)
G133260 NA non-coding upstream 119077 15299184 ~ 15299387 (+)
G133220 NA non-coding upstream 208618 15209515 ~ 15209846 (+)
G133386 NA non-coding downstream 157721 15597408 ~ 15606339 (+)
LOC117597798 NA non-coding downstream 190766 15630453 ~ 15640958 (+)
G133617 NA non-coding downstream 532173 15971860 ~ 15972109 (+)
G133635 NA non-coding downstream 603153 16042840 ~ 16043039 (+)
G133721 NA non-coding downstream 724999 16164686 ~ 16170597 (+)
srp19 srp19 other upstream 33640 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 435580 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 438560 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1095014 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 1395777 13949937 ~ 14022687 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 562374 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 963061 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 1140570 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 1276446 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 1420289 16859976 ~ 16868768 (+)

Expression


Co-expression Network