lancl1 (lancl1)


Basic Information

Item Value
gene id lancl1
gene name lancl1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2543831 ~ 2550565 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928650.2
ATCATTCAccttttccatttaaaatgtcattttacatTCATAAGTAAATATTTGGTGAATATTCGTAAATTGCAcgaatatattatacattattaagTAAGCTACGGCCTGTGCAGACGTTATGCCGtgtttgtgctgtgtgttgcagctaaatatgaagaaaatataataaatagctAAAGATAAATATTAGAGATAcgataaatattattttgttgtgttttttccgCTTTATTAATTAGGTGTAATCTAGTAATAAGTTAACTGGAAACACCCCTTATATTAGGCCGGAGTTATTTTTTGATACGTCACACAGATCTAAAATGGCATcttggagaattttttttttttaataaacagctGGTACACGTCACAACTCTAAAATCCGCCTTATTACGTCACAGCGCTGTttaattctccattctgattggtcattcaTTCTGATTAACGCATTCCCCACAATCATTTCTTTATCGTTTTAGTAACAGCAAACCGATTTAAAACGCacgtaatcgttgatatggtgacgttttctgtagtGAGAcgtttatctcatttttttggaaggagtctccagtgtcagcactttgtaacagtcaaaaaAGGTAAAGCTGGAACGTTTCCacaacaggaaagtcttcaggacagacgaggtTGCACTTTCCGGTTtattgCGAGGTGGAAGATGCCGGACCAGCGAGCTCTAAAGAACCCCTACCTGGACTATAATGGCCCTGAGAGCACACAGGACCTGTTTGACTCTCAAGGCAAACTCACACCTGCTTTCGCAGGTCGTATTAGCAGTAAGATTAAAGAGCTGCTGGCCGTGATGGAAAACGGGCTGAAGACGGCCGACCCGGGCGACTGCACCGGATACACGGGCTGGGCAGGCATCGCCCTGCTCTACCTGCACCTTCACTCGGTCTATGGTGACCCTGCGTTCCTCCAGAGGGCGCTGGAGCACGTGGGCCGCAGTCTGAGGAGTTTAACCCAGCGATGGGTGACTTTCCTGTGTGGAGACGCCGGGCCGCTTGCCGTGGCCGCTGTTATTTATCACCGCTTACAGAGAACCCAGGAATCCGAGGAGTGCATCAACAGGTTGATGCAGTTGCACAAAGCGGTAGTAAAAGGTTCAGGCAGCCTCCCAAACGAGCTGCTGTATGGCCGTGTGGGCTTCCTCTTCTCCCTCATCTTCATCAACCAGCAGTTCCAGCAGGAGAAGATCCCCACACAGTACATTCAGCAGatctgtGATGCTGTGTTGGCATCAGGTCAGAATCTGGCTCAGAGGATGAGGGTGGAGCATCAGAGTCCACTCATGTACGAGTGGTACCAGGAGCAGTATGTGGGTGCCGCCCATGGCCTTTCAGGCATCTACTACTATCTCATGCAGCCCGGTTTCATCTCTAACCACATCATCGTGCCAGCCCTCGTGAAGCCCAGCGTGGATTACCTGTGCCAGTTGAAGTTCCCGTCAGGTAATTACCCTCCGTGTGTCGACGACAGCCGTGATCTCCTGGTGCACTGGTGCCATGGCTCTCCCGGAGTCATCTACATGCTTCTGCAGGCCTACAAGGTGTTTGGTGAGCAGCAGTACCTGCATGATGCCATGCAGTGCGGTGAGGTGATCTGGCAGGGTCTCTTAAAGAAAGGTTACGGATTGTGTCACGGCGCAGCAGGAAACGCCTACGCCTTTCTGGCTCTCTACAAACTCACGCAGGAGCCCAGACACCTCTACAGGGCCTGCACGTTTGCAGATTGGTGCATGAACTATGGGAAACATGGCTGTCGCACTCCAGAcacacctttctctctctttgaagGAATGGCTGGAACTATTTACTTCCTCGCCGACCTCCTGCAGCCGACGACAGCCAAGTTCCCAGCGTTTGAGGTGTAAagGTTCACTGCTACGCAACGTCGCACGCTAATCAGCGCTTGAAGTGCAAAACCTCAGTCTGGAGTTTTATCCTCCTCCAGgacaggagacacacacacacacacacacacacacacacacacacacagccgtgTTCTTGTTGCTCCCCGTGCTGTAGGGAACGTGTGCATGCCTGTTGCGCGGTCATGTCCTATTCACACTCCATGTTCTTGCTTCCAGTTTAACGTCGTAAactaaaaacaggaagtagcgAGCTAAATCTGTGCACTGTATTTGGAAATCTTTGTATTAGAGAGTTGCTATGGTGAATTGTTATCAATAATTAAACAAGAAATGggaatgtgatatttttgtatttgcGTATCGTCTCTGCATTTGCTTTTCATATAACAGTGAGCTGTTAAACAATTGTAGTGCAAGGCACATGAAGCTACTTGCTTATTTCTGGTATTTATGCAGGTTTACTCTGAAAGTCTAGTCTGAAAGTAATAGTAACTGATCATTTTAGAGATTTCAgggttattttgttttgttcttttaagGAAGTAACactactgtttgtttttttcatttgcatctGCTCAGTAATAAAAGCTAACGGACTATGA

Function

symbol description
lancl1 Predicted to enable glutathione binding activity; glutathione transferase activity; and zinc ion binding activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in cytoplasm and membrane. Predicted to be active in plasma membrane. Orthologous to human LANCL1 (LanC like 1).

NR:

description
PREDICTED: lanC-like protein 1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0008152 metabolic process biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043295 glutathione binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K25210 LANCL1; glutathione transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928650.2 True 2508 mRNA 0.46 12 2543831 2550565

Neighbor

gene id symbol gene type direction distance location
LOC117596191 LOC108258868,LOC108258869 coding upstream 108089 2431258 ~ 2435742 (+)
LOC113535760 LOC108258868,LOC108258869,LOC108258361 coding upstream 115370 2424964 ~ 2428461 (+)
LOC113535762 LOC108258868,LOC108258869 coding upstream 204691 2332872 ~ 2339140 (+)
LOC113535765 LOC108258402 coding upstream 413938 2036489 ~ 2129893 (+)
ube2f ube2f,LOC107556276,LOC107725407,LOC107674019,LOC107707607 coding upstream 514323 2018886 ~ 2029508 (+)
mylz3 mle3,mylz3,LOC108440452,LOC107725378 coding downstream 4103 2554668 ~ 2558788 (+)
pcnp pcnp,LOC106574824 coding downstream 10242 2560807 ~ 2565250 (+)
fn1b fn1 coding downstream 122974 2673539 ~ 2717309 (+)
mnx2b LOC108258565,LOC108411702 coding downstream 186956 2737521 ~ 2741639 (+)
LOC113535757 LOC108258552,LOC108258557,LOC108258555,LOC108258559 coding downstream 221926 2772491 ~ 2776806 (+)
G369892 NA non-coding upstream 31389 2512218 ~ 2512442 (+)
G369487 NA non-coding upstream 637329 1901894 ~ 1906502 (+)
G369471 NA non-coding upstream 688856 1854746 ~ 1854975 (+)
LOC117596156 NA non-coding upstream 905525 1525141 ~ 1638306 (+)
G369969 NA non-coding downstream 196797 2747362 ~ 2750073 (+)
LOC113535706 NA non-coding downstream 202235 2752800 ~ 2757126 (+)
G370010 LOC108258553,LOC108257886,LOC108258555,LOC108258559,LOC108258552,LOC108258557,LOC108258561,LOC108257788 non-coding downstream 252960 2803525 ~ 2827486 (+)
G370092 NA non-coding downstream 591148 3141713 ~ 3173089 (+)
G370281 NA non-coding downstream 679537 3230102 ~ 3230302 (+)
LOC113535805 NA other upstream 165831 2357669 ~ 2378000 (+)
hecw2b hecw2,LOC108258347,LOC107676038,LOC107674007,LOC107556280,LOC107566886 other upstream 650002 1853186 ~ 1893829 (+)
prkag3a prkag3a,LOC108258362,LOC103034078,LOC107673997,LOC108437121,LOC107750059,LOC107676055 other upstream 735493 1797604 ~ 1808338 (+)
abcb6a abcb6,abcb6a,LOC108258352 other upstream 760391 1769149 ~ 1783440 (+)
radil radil,LOC107725399 other upstream 1130087 1387799 ~ 1413744 (+)
spry2 LOC108259026 other downstream 1856907 4407472 ~ 4414899 (+)
LOC113535386 LOC108258920 other downstream 1967556 4518121 ~ 4528516 (+)
mpc2a LOC108258922,LOC107564279,LOC107692629,LOC107665976,LOC108439361 other downstream 1985867 4536432 ~ 4549766 (+)
dmd LOC108258700,LOC107095375,LOC108439357 other downstream 2103150 4653715 ~ 4913847 (+)
LOC113537319 LOC108258902 other downstream 3009517 5560082 ~ 5569295 (+)

Expression


Co-expression Network