G413787 (LOC108259818)


Basic Information

Item Value
gene id G413787
gene name LOC108259818
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_022995304.1
NCBI id VFJC01000035.1
chromosome length 382912
location 256889 ~ 259901 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU491557
TCTGGTTGAAActcatattttattaatgaggTTACAGCACACAGGAAAATCATTGGCTCAGACTGCAGTggttaccatagcaacagtaCACAGTAAAAATATAGTAACAGCACAGTAATAATATTTGGCAATTCATTAAGATTTGATTTAAACACAACCAAAAATAAACCACTCAACAACCAAATTACACCTCATAttaacaaaaagagagagagagagagagagagaaaagaacagcATTTTAACATTACTCTTAATGTCCCATTAGCATTACAGCTAATGCAAACGATGAACCAGGGACAGTTCTAATTTTGGTGCTTATAAACCAGAACTAAAAAATGCTAGTAAATAAGTTGCATGAAAAATTCTGGTAAACTTGATAAAAGGCTATTACTAGTACATTAGCAGTAggaaatatttctgttaaactgGCAGCAAGACAGTTAGCACATTAGCAGCATGGTTAGCTTTAGTAAACTCTGAGAAATGCTAAGGCTTGTAAATTAGCAACGTGACAAATATTGAAAAACTAGAACAAAGACTAATGCTAGCACaataacagaataaaaactGGTAGTAAAATAGCAGCAAGGCTAATGTCAGTTTATTGGCAGGATAAAGATTGCTTGTACACTAACAGTAAGTCTAATACTAGTATGATAGGTGTAATgctaatgaaaacattttagcaGTGTGGTACATTCTGTAGTAGTGCAAATGCTAGTGCTAGTACAGTAGCACTGTGACAAATCCTGGTTCAACTGAAGAAGGACAATGCAGATGCTGAATGCTgacaaatgttaaacaaaaacaaaagctaaTGCTAATACAGTAGCAATATGTCAAATGCTAGTAAACAGTGATATAGGCTACAGTTTGTACACTAGCGGTGAGGTAAACGCTAGCGCACTAGTAAACGCTAACTGTGGCACCAGTTCAGTGAGAGGAACTTCTCTCTGATCTTCTCACAGGGATGAAAACTCTCACACTTTCATCATGAAATTTAGATGTCTGAGTTCCTAACACTTTTACTGCTGTCATTTCACccataaaaaaatcacactcaTCTCTGAAAAACCACAACAGCTAGTCAGTTAGTACATTAGTATTCAAGCTAACGCTGTAACATTAGCCACATTTAGCTGGTGCGTTATCTGTAGTGGCTAATGCTAACAGATTTCCAAATGTTTGTAGGAAATGCTGGTATTTATCAGATACAGTaggggacagtgtgtgtgtgtgtgtgtgtgtgtgaatgagtgtgtgtgtgtgtgagtgagtgtgtgtgtgtgtgtgctcttgtaTCAGTTGTTTATTCtcttttattccattttttctCCTCCTCAAATCTTCAGATCATCCAGTCTGCTCTTGTTGTTGCTATAGCGACTAGCATAGCTCGGCCTGCGCTGGTAATATGGAGATCCGGGGGCGGAGCTTGAGGTTTTCTTCATCCTGGTTTCATCAGGTTTGGTTTCCGCAGGGTCGGGTTTTGTCTCCGTGGTGATGCGCTCCACGGCAAGATTATCGTTGTTCTGTTTGTGGGCGGAGCGACTGCCGTACGCGGGAAACGCGCCATCAGTGTCTGGGAGTTTGTACTGATGCTCAGGGGGCGGGGCGTGGGCGGGGAAATAGGGGTAACTGGCAACAAATGGAATGACAGCTTCCTCGCTGGGCGTTTTGGAGGAAGAATCAGAGAGGGAACGGCGATAGCGGAGACCCTGGCGACACTTAGTGAAGCCAAGATGGTACATCTCCACTAAATTTAGGAGAAGTGATACACACGCTACTGCTAGCATGAACAGGATGAAGATGGTTTTCTCCGTAGGGCGCGAGATGTAGCAGTTTACGGTATTGGGACACGGCCAGCTGCTGCACGTGTACATGGGCTTGAGCTCAAAGCCGTACAGGAAGTACTGCGCCACCAAGAAGCCCACCTCCAGCAGCGTTTTGAAAATGACATTGAGCACGTACGTGCGAAGCAGCGCCCCCTGCAGCCGGATCTTCCCCTGTTCGTCCCGAATCATTGCCGGGACCTTCCCTGCTTTCCCAGCTCCCTCCTGATCCAGACGCTTCTGCTTGTCCTCCATGCGCAGCAGGTGCAGGATGTGTCCCAGGTAGATAAGCGTGGGCACAGACACGAAGATGATCTGCATGACCCAGAAACGGATGTGCGAGATGGGGAAGGTGCGGTCGTAGCAGACGTTTTGACAACCGGGCTGCTTGGTGTCGCAGGTGAAACCCGACTGCTCGTCACCCCACACTTTCTCCGCTGCTGCTCCCAGGACCAGGATCCTGAAGATGAAGAGCACAGAGAGCCACACCTTCCCCACCACGGTGGAGTGCTCCTGAGCGCTCTCCAACAATTTCCCCAACGAGCTCCAATCCCCCATGACTATTTACACACAGtctgagagcgagagagagacagagagagagagagagagacagagagagagacagagagacagagacagagacagagagagagacagagagagagagagacagagagagagagacagagagagagatacagagacagaaacagagagagagagacagagacagagacagagagagagagagacagagacagagaggttcAAAGAAGTATGAGATAAgaggcaaagagagagacagagagaaactgagaaaaagaaaggaaaagaaacagagggacagacagaaagaagaaagtgaTAAATAAAGTGATTGATAGATCTGAAACAGTTATCATTAATATTACACTTGCCTTCTGATCACAGATTCTGaatcagatgtttattttagtcATATCTCCATCACAGGAAATCAGGAAAGCCCTGGGCCAGTTTTAGTTCCTGGAACCTTTTCAGTTCTTGCCCTAAAAGTTCTTGCAGACCAGGAACTGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU491557 True 2895 lncRNA 0.44 2 256889 259901

Neighbor

gene id symbol gene type direction distance location
acsl4b LOC108415597 coding downstream 19875 223139 ~ 237014 (-)
LOC113525691 NA coding downstream 104980 146269 ~ 151909 (-)
LOC113528924 LOC108259807 coding downstream 142956 91881 ~ 113933 (-)
taf1 LOC105893216 coding downstream 166258 75564 ~ 90631 (-)
LOC113525500 taf1 coding downstream 230925 16362 ~ 25964 (-)
LOC113525702 LOC108259811 coding upstream 5134 265035 ~ 270893 (-)
LOC113542735 tbc1d8b coding upstream 12935 272836 ~ 303836 (-)
rnf128a LOC108259815 coding upstream 46807 306708 ~ 327900 (-)
LOC113528687 NA coding upstream 81891 341792 ~ 361379 (-)
LOC117596786 NA non-coding downstream 43613 212066 ~ 213276 (-)
G413791 NA non-coding downstream 64777 142898 ~ 192112 (-)
G413792 NA non-coding downstream 93897 160923 ~ 162992 (-)
G413799 NA non-coding downstream 122486 130426 ~ 134403 (-)
G413795 NA non-coding downstream 132640 121450 ~ 124249 (-)
G413788 NA non-coding upstream 7987 267888 ~ 269182 (-)
G413824 NA non-coding upstream 31069 290970 ~ 291465 (-)
G413825 NA non-coding upstream 42744 302645 ~ 303375 (-)
G413822 NA non-coding upstream 55136 315037 ~ 316114 (-)
G413829 NA non-coding upstream 58864 318765 ~ 339478 (-)
LOC113525703 mtmr2,LOC108414808,LOC107747813,LOC107732604 other downstream 5477 241432 ~ 251412 (-)
LOC113525038 NA other downstream 16906 239520 ~ 239983 (-)
LOC113525707 gria3a,LOC108259758,LOC103044872,LOC107597231,LOC107672342,LOC107592272,LOC107732609 other downstream 52309 163265 ~ 204580 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021101 NA coding CM030130.1 CM030130.1 3762081 ~ 3773308 (+)