AMCG00021101


Basic Information

Item Value
gene id AMCG00021101
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 3762081 ~ 3773308 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021101
ATGACGGCGTCCCACCTCAGCCTCTGTGCCACGGAGACTCTGGCCAACATTATGAGTCCCAGAGCAGAAATTCCAAGTCATTCCCAGTGCGATAGCAGAGACCCTCCCTGGAAGAGGATTATATTTAGAAAGGCACTCGTCCTGGAGACACGCGTCTCATTGGACAGCCCCTCTGCCTGTCACAACAACCCCAGAGTGAAGTGGACGGCTCCACACGTCCTGGACTAGCCCCGTGCACGTGCCGCGATGGGAGACTGGAGCTTGCTGGGAAAGCTGCTGGAAAGCGCCCAGGAGCACTCGACGGTGGTGGGCAAGGTCTGGCTGACCGTGCTGTTCATCTTCCGCATCCTGGTGCTGGGGGCCGCGGCCGAGAAGGTGTGGGGGGACGAGCAGTCGGGCTTCACCTGCGACACCAAGCAGCCCGGTTGCCAGAATGTCTGCTACGACAAGACTTTCCCCATCTCCCACATCCGCTTCTGGGTGCTGCAGATCATCTTTGTGTCCACACCCACCCTCATCTACCTGGGCCACATCCTGCACCTGGTGCGcatggaggagaaggagaaccAGAAGGAGAAGGACAGGATTGCCCAGGCGGCCCAACACGGGGACAAACAACCGCTCCTGGGCGACGGCAAAGTCAAGAAGACCCCCGTCCGAGACGAGCAGGGCCGGATCCGCATGCAGGGGGTCATCCTGAGGACCTACGTTCTAAACATCATCTTCAAGACTCTTTTCGAGGTGGGCTTCATCGTGGCCCAGTACTTCCTCTACGGCTTTGACCTCAAACCCTTGTACACCTGCAGTCGCCATCCTTGCCCCAACGTCGTCAACTGCTACATCTCCCGGCCCACCGAAAAGACCATCTTCATCCTCTTCATGCTGGCCGTGGCCTGCGTCTCCCTGCTCCTGAACCTGGTGGAGATGTACCACCTGGGTTTCACAAAATGCAGACAAGGGATCAAGTACAGGACTGAGAACACATTAGAAACAGGCTCCAAAGCCCCCAGTGAGACTGCGGTGCCCTTCGTGCCCAATTACAATTACTTCCCAAAACACCACCCTCCGCCAGGACCCTACCAGTCCGGGTCCAGATACAGCCTCTCTCCCCTGACCGAGCCGGACTCTCCCTACCAGCCGTACAACAGCAAAGCGGCCTACAAGCAAAACAGAGACAACCTGGCCGTGGAGAGGAACGGCAAGCCCGAGGAGAGCGACCTGAAGGTGAAGAAGGCCCCCCCAACGCCCTCGGAGAAGCAGCGCCGGAACAGCCGGTCCAGCAaacacagcagcaacaacaagaCACGGTTAGACGATCTTAAGATCTGACCAACATCTGCGTCCCATGTGCGCTCCCCGGCCCGGCGCTCGAGCCAGGCCCCGCGGTCTCCTGAACTCGCAGAGCGCGCtggtgttttaattgcattgatCATGGCGCACGGGGCCCATGTGTCTTCCATTAGGAGCAGTGTGGTCTGAGATCCCAAGTAggcaagcaaaaataaaaccgCCTACGCTTTCATCTCAGACCCAAAGctgttgctttttcattttctctttttatggCTGGTTCCATCAAAGGCTCCACCTATCGTAATGTACCCAAATGTGTGGGTGCCCTTGTTTATGCAGtgacttgtttttctcttcttttctttttttaacatatgaGAACATTTAAGGCTTTTACTTGAATCTGTGGAATTGTTTTGACGAAGCATTCTTAACACACTGTCAGCAAGGTTTAAACTACATTCATAGCAGATGAAAAACCACTTATATTTTTAGTtcttacagtaaaaaaaaaaaaaattctgccaTTGTAATTTGCTgtctcttattttttgtgtcGATGGCTTATTAAAGCACACAAGGCTGCCGTTTGTCTGTTGTCCTTGTTTTGAAGAAAGAGAACACTAATGGCTTCTGTTGAGATAAATGAGATCAATAATTAACAGGAgccagacacacaaaaacaacttcACAACTCAGACATGGCTGACGTCGGTAATACTTCTGTCGCTATTTGCAGAAACGCTGGATTCCAGAGCcagttgatttgtttgtttacttggtTGCAGCGGATGTGTAATCCTCATTTCGCGACCCGAACTGgcactggaaaaataaaaaataaatctcctcCCGACTCTTTTGCGAACACTGAGGCCAAATATCTCCCATCAACACCCATGCCTTGGCTTGGAGCACTATCCAGCATCCAATGTCTCTCTCTTGACATGTCCTCTCTGGCTCCCCGATAGAGATTAGATTGAGCTCTTTTTCCGTTCCACACCTCTCGTACGGCCCTCAGTCTTGCCCGAGTTCTCCCTTGCGCCACGAGACGAGAGGAAGGGCATTAACTGAATACGTGGCCACGACACACAGCTCTTTAAAATGGGTTCTTTACTGAGAGTTTAAAATCCTTCTCTTGAAATCTGTGCTGGAATACAAACTTGAATCTAGTGTCCCCATCAGACGGGACACGTGCTGTTGAATTGTGTCGCTGGATAGTCGCTCTCTGTCCTCGGCGCCTGGGGTTTGGAGTTAGAAAACGGGTCAATGTTTGGACCGTAATCTTATCCAGAGTTATTTGAATTAGTCACAGATAACtgtaatgacattttttttttagagcttaatgtttttcttcagtcaATGTGAGTATTTACAGTTCAGGTCAGtcttttgttggtgttgttttgaggcacttttgaaataaataaatcatgtttcaACACAGAGAGGAATTTGTCTTTGGGGGGGGaaaactctctctttctctctataaTACAGCGAGGAGAAACAATACTAATGGAAATTTGTGTTACaatattgtatactgtatatagtttaCTGGGAATGGTcaattttacattgttttatgtgaatttGCAAAGAACAATTAAGGTATTGCAGCTATGGTTTTTAAAGTGCAAATGATTAACTTCTGTATCGCTTGTTTTCCAATAAACGtggattatttttctctcacagtaaactgaaaagaaaacctgTGATAAACCATACAGGAGGAAAGCAAAGTTAATCAGTTAAAGTTTGAGCTGTACAAACCCACAAAGATGAAGCCGTCGCACAAGACCCTGGAGTGACGCTCATGGGGTCTGCAAAGATTCTCAAGACAAACAAGCAGAAATGTTTTCtcataaaaaaacaccttcCTGTAAAGAAATCGTGTCGAGATCTGGAGCGACTGTAAAGATGTTTTGGGG

Function

GO:

id name namespace
GO:0010644 cell communication by electrical coupling biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07612 GJA3, CX46; gap junction alpha-3 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021101 True 3233 mRNA 0.48 2 3762081 3773308

Neighbor

gene id symbol gene type direction distance location
AMCG00021106 NA coding upstream 1191 3758599 ~ 3760890 (+)
AMCG00021104 NA coding upstream 4389 3757144 ~ 3757692 (+)
AMCG00021103 NA coding upstream 12985 3741481 ~ 3749096 (+)
AMCG00021102 NA coding upstream 30363 3725004 ~ 3731718 (+)
AMCG00021100 LOC106568050,LOC106603405,LOC107548453 coding upstream 53785 3704169 ~ 3708296 (+)
AMCG00021108 nono coding downstream 30903 3804211 ~ 3809015 (+)
AMCG00021107 NA coding downstream 68292 3841600 ~ 3844289 (+)
AMCG00021112 gpr50,LOC104936099,LOC108436701 coding downstream 132845 3906153 ~ 3915644 (+)
AMCG00021124 NA coding downstream 965833 4739141 ~ 4751627 (+)
AMCG00021123 NA coding downstream 978871 4752179 ~ 4760646 (+)
G83528 NA non-coding upstream 407795 3353985 ~ 3354286 (+)
G83516 NA non-coding upstream 674172 3087694 ~ 3087909 (+)
G83497 NA non-coding upstream 824396 2937485 ~ 2937685 (+)
G83493 NA non-coding upstream 997077 2764793 ~ 2765004 (+)
G83459 NA non-coding upstream 1154411 2607269 ~ 2607670 (+)
G83621 NA non-coding downstream 15719 3789027 ~ 3789246 (+)
G83622 NA non-coding downstream 21681 3794989 ~ 3795242 (+)
G83623 NA non-coding downstream 22036 3795344 ~ 3795611 (+)
G83645 NA non-coding downstream 162388 3935696 ~ 3935955 (+)
G83704 NA non-coding downstream 488693 4262001 ~ 4265982 (+)
AMCG00021076 NA other upstream 1531934 2209482 ~ 2230147 (+)
AMCG00021063 NA other upstream 1842715 1917488 ~ 1919366 (+)
AMCG00021049 NA other upstream 2835606 918006 ~ 926475 (+)
G83624 NA other downstream 24533 3797841 ~ 3798783 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other downstream 353762 4127070 ~ 4129373 (+)
AMCG00021114 NA other downstream 429403 4202711 ~ 4233797 (+)
AMCG00021133 NA other downstream 2770926 6544234 ~ 6546601 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other downstream 3338689 7111997 ~ 7121237 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_09747388_09751284 NA coding CI01000009 null 9746969 ~ 9752056 (-)
rainbow trout (Oncorhynchus mykiss) G434116 NA non-coding NC_048569.1 CM023223.2 70168647 ~ 70168874 (-)
striped catfish (Pangasianodon hypophthalmus) G413787 LOC108259818 non-coding NW_022995304.1 VFJC01000035.1 256889 ~ 259901 (-)