AMCG00000713 (creb1b,creb1,LOC107663917,LOC107551947)


Basic Information

Item Value
gene id AMCG00000713
gene name creb1b,creb1,LOC107663917,LOC107551947
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1432992 ~ 1447408 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000713
GCTCGCTGCTGTGGCCGGGCTAGCGCTCGTCTCCCTCGCTCTCCGTGTTGTTGTTCCCGGTGACGCGGCGGAGGTGTAGCCTGACGCGGTCTCTTACGTGTCGGCCTGAATAAAAGTGGAGCTCCGGGGGCCCGGGAGTGACGGAGGGAGTCTGTACCGCTAACTCAATGACCATGGAATCGAGTGCAGACACGCAGCAGGCGGGGGACACTGCGGTCGCCGAGACGGACAGCCAGCAGATCGGCGTGCAGGCGCAGGCGCAGATCGCCACCCTGGCCCAGGTTTCAATGGCGGCCGGAGCCCACGCCACATCCACCGGCCCCACCGTGACCCTGGTGCAGCTCCCCAACGGACAGACGGTGCAGGTGCACGGGGTCATCCAGACGGCGCAGCCCTCCGTCATCCAGTCGCCGCAGGTGCAGACTGTGCAGGTGAGCAGGGCGGGGCAGGGCGGCACAGACCGGCAGACCCGCACCATCGGACCGGTTCCCGGGAGAGCGGGGCCGGGGACCCCCCTGACCGATGGTGTCTCTGTGTTGCAGATCTCCACCATCGCCGAGAGTGAGGACTCCCAGGAGTCGGTGGACAGCGTGACCGACTCGCAGAAGCGCCGGGAGATCCTGTCCAGACGCCCCTCCTACAGGAAGATCCTGAACGACCTGTCGTCCGACGCCCCGGGGGTCCCGCGGATAGACGAGGAGAAGTCCGAGGAGGACTCTTCGGCCCCCGCCATCGCCACCGTCACTGTGCCCACGCCCATCTACCAGACCAGCAGTGGCCAGTACAtCGCCATCACACAGGGAGGGGCGATCCAGCTGGCCAACAACGGCACGGACGGGGTCCAGGGCCTGCAGACCCTCACCATGACCAACGCGGCGGCTGCGCAGACAGGCACCACCATCCTGCAGTATGCGCAGACCACAGACGGGCAGCAGATCCTGGTGCCCAGCAACCAGGTGGTGGTGCAAGCCGCCTCAGGGGACGTCCAGGCGTACCAGATCCGCACGGCGCCGACCAGCACCATCGCGCCCGGCGTCGTCATGGCCTCCTCGCCGGCGCTGCCCACCCAGCAGACAGCGGAGGAGGCGGCGCGCAAGAGGGAAGTGCGGCTCATGAAGAACAGgGAGGCGGCCCGTGAGTGTCGCCGCAAGAAGAAGGAGTACGTGAAGTGTCTGGAGAACCGCGTGGCCGTGCTGGAGAACCAGAACAAAACGCTCATCGAGGAGCTGAAAGCACTTAAGGACCTGTACTGCCATAAGTCCGACTAGGCCCGTCACCCCGGGGCGCCGCTGCAGGCCGGTACCGAGGCCGCAGCCCGGCGCCCGGACTGGACCACAGACACCGTTTtccaagtgtgttttttttatcgATTGCTACAAACTGCCGATCGGAGACGATGCGATACGACGGGAACGGGGCGGCGAGGAGAGAGAGCGGGAACCGCGGCACCACGACGCCAAACCCACTCCCTCTCCGGAGCGGGGGGGCCTGGCGGCACACAGGCGGGCGGAGGGAAGAACGAGATCGACTTTTAAATCATGgattaaaccttttttatttttgtatttagctGCCcgctgtttttggttttattcgGGGGCGTGGAGGTGTTTggcaatctctctcgcccgcCCTCATGGCGACATCTGTGCCGGGCTTTGCCATCCACCCCGTGGGATTCTGGGAGAGCGCCAGCTGGGCTGTTACAGTGGGAGGGGGTTTTGATTCGGTTTGGTTCGTGTCTGGCGTCCCCTCGGCCGCCGGCCTCACACCGAGATCTGcgtttattttttcacagcaTCAGGTGGTCCGGATGTGAAACACAGCCTTCACTCACAGGGGTCTTTCTTTatctccttccttccctctctctctctctctccttcacactctctcctctccctctgtctctctccttccctctcNNtctccccctctctccttccctctctttatctctctctccttccctttctctctctctctgctgaaaGGAGCTGTTAGAGGATTGGAGTGAGATTTCTATTCCCTCCCTTTTTGTGGCTGGTGTGAGGGACCCGAGCTCGTGGGCCCGTCTCACCAGCGCTTCTGGAAACGGGTCGAGGGCTTGGCCGCTCAGATATCACTTGCCATGTTGTCTTTCAGTATTTTATCGTGTGGTATTTCTTTATTATGATGTATCGTTGTTTTATTTGTCCCTTACCTTGtgtttcccatctgtctgtttttgaaatggTTGTTCTCCAGCAGCGCGACCCAGTCGAGGTCCTGAGGGTGGGGTCGAGACGGGTCCGCAGGAAAACAATCGAGTTTAAAAACAGGCAGACGGATGCAAACAATACGCTGTCATGACGGTTCCTGAAACGCTTTCCTACCCCGAGTGTGCAGGCGTTGAGTCGCCGGTGGGTTCATGCCGGAACGCGCGGCTGCCCCGCCCGGTGTGGAACCTGTGCTGGGCCGGGCCGGGAGACGGGCCTGTGAGAGGCAGGGCCGGGTGGGGGGGCCACAGTTTCCATGAATGAGGCAGCAGCTGCTCAGGGCTCAGAGGGACGCGCTTTAAATAGCTCAGGCTGGGGAGGAATCCAGAGCACGGCTGTGggaaaatagagagagagggagaggggcggACATTGAGCTGTAATTATAAGACAAGCCTTTGTTCAAGATGAGTTATTGAGGGAGTCGGACAGAACTGGAGCGCCGTTTCTCTGACACTCCCCTGCTGGGCTGCGGGGGGGTACAGGAACAGCCGAGCATGGGGAGGAAAATCCTTAATAGGCCaagggcagagagagaaatggagcaGGTTAATTAATAAACGAGTTAGTTAATAAAGGAGCCATCTGAACATTGGAGGTCCAACGGGCGGCCGCGGTAGAGCTGTCCACGTCTCCTGGCCTCCCACAGGCGCTAGCATTGCGGTGCCAGCAGAGCACTTTGAGCAGGTGGGGTCTGTTCAGGTGGGAGAGCGGGGGGtcgggggtcaggggtcagggctGTGTCACTCAGCGCTCCCCTGAGACACATTGGATTTACACAGAAAGCTCAGGACTGTGAGGGGCAGGCAGCTCACGCCCCTCGCTCTCCGGGCCGCTCCACTGAGCCGCCACACGGGGCGCTGTCTTACCTCCCGGCTCCCAACGGGAGGAAGAGCACTAGTGTTCATTTTATTCTTCATCCGGCGATGCGATgccatattgtattattattatgacggTGATTCATCTTATTATATCTGACGGTTATGTTTCGTGCTTCAcgctatatgtatttttatttttataacacttTTTGTTGGTCGTCGTTATGATCATGATAAGTATTTCTCTCGACCTTGGCGGTCGGGTCTCCGGAGGCCCGGTTACACCGCGCTCTGCCAGGACACGGGCCCTTTCTGGCGATTACCAATAAGGCAGCTATTCAGAAAAGGCTGAGAGAGATTCAACGCTACCTTTGTGTCCCACTGTGCGGAGGGGCGCCGAGCTCGGAGCACAAGGTCAACacagtgtctgtgtatatatatatatatatatatatatattatttgtatttttatctcTGACCTGCAtaatcacacatgcacacttacacacacatccTTAACACAAAAACGCAAACCAGGAGCCACTCTGGGGGGGAAGGTGCAGTCCGGCACAAACACTACCAATGGCAGCCAAGGACAATCCACGATCTGTAGTCCAAGTCCGGTACCGGAgtcctctctgctctctcttgCGCTCCTGTCCGTCGCTTCCTGGGGGGGCGGCCTCTATGACAtcacaatatgtacatattttttaatacgaAAGCAAGTTCCCTGCATGCTTGGCGTGGTCCCCCCGGGGCCGCGAGGCCAGGTGGAGGTGCGCTCCTGTTCGGGACACGCCCGTGAGAGAGCAGACAGGCGTGGGGATCACCCCTCCTTCCCCTCATCCGTCCCCGTGCAGAAATGATCTGAGCTCTGCCACGTGGGTCACACTTTTCATACGTGTATTCTTATTGATAATGATTAATTAGGTCAGCACTACCCCAGGGGTGGAGTCCCGGTGGGAATCTAATTCCCAGCACGGGCAGACAATggagaaacaggaaagaaaGTGTCCAAAACTTCAGCAATCgaggacacaaacacacacaggaagggACGCCTTGTTCTGCTGCAGGtcactttgggggggggggcatggcAGGATCAGGTATAGATACTCGTGCCGCGGGGCCTGGGGGGGGCAGCCAAGAGGTTTAAACCTCAGGCATGTTACACTTGCTACTTTAAGTTTCGGTGATGGCTATCGAGAGCACCAGACGCAGTATTGCTttgctggtttttatttttatacattgaaGGCGCATTCGAATGTACTGTACTTGTCTTCGTGCATCTGTGTGACCTACACGGCCGGTGTCTCCCCATGAGGATTTGCCTTTTCTTTGGATCACATGGTTTCTTTTCATGTAAACTGTTCGTCGATCTGTGTGGCAAATCCTCGCCAGTCGTAAGTAACAAGTAATCTATAAGTTGTAGAAAATGGTCCCTGAAAATCAAATGAATGCTTTTCAGGGGCCactttctatttgtatttggtGATTGGTGGCAATATCGGGGTTGTGGTTTGGTCTCCAGGCTGACCAGAGATGTGATCCCGTCCCCAGATTgatcccccccctctctctctctatacctCCAAAAAGGTTGCGTCGGTTCCAGACCCCCATATGTGTCATGATTTCTGCCGAGGTCTCCGGCTGTAGTTGGGGAATTCGAAGATCTTCGTGGGCAGCGGTGAGACTCGGTGATTCGTTCGCTTAAATTTAGACACCGACACAAAAAAGTGAATCAAAGTGTTTATCGGTGATATCTTTTCCGCGGTTGGTCGAACACCGACTCCGCCCTGGAGAGTGAGCCGCACAGACGCAgtccacactgacacgcacgcAATGAGCACGATCCAAACATCTGGAATCTGTGCGGCTCACTCCGGAAGGCAGAATCCGTGTTCCTCTGATTCTGGAAAGATGCAGTCAGTGGTGAGGTCTGGTTTAATAATCGGTGTGTATCGAACAACACAAGTCACCGCATTGCACCGTTTCCCGCAAAGGGTAAGGAGACGTCAGAGGGCAGGTTGGTTTGCGTCAGTTGGTGCCGAGCCGTCGCTTCACCAGGAGACGAACTCGGCACGAACCGATGTGAACAGCAGGGGTACACAGACACTTACGTTaagaaattatgtattatttatagttgtttttttatataaaggtGTGAGATTGTGATCTGGTGTAAAATGTCTCACCAGATCTGAAGCAGAAATTGAACAAAAAAGGTgcttttattatgatgatgatgttaagAAGAGGCTCCAGTGCAGGATTTGAAGGTGTGAAGCTGAGAGAGGGAGCCGCTCTGGGTGAGGAGATGACATTTCTGGGTCACGTGTgtcttttttacttttgttgtgAGAAATAAGCTGAGAATAAAGAGTGGTTACAGAGCGCCCCCTGTGGCCCCCAGGAACCagagattttaaataattggaaACGCAGCTTTGCATTTACAATGggatataaatgtgtgtgtgtgtgtgtgtat

Function

symbol description
creb1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of ATF4-CREB1 transcription factor complex. Orthologous to human CREB1 (cAMP responsive element binding protein 1).
creb1 Enables several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; cAMP response element binding activity; and identical protein binding activity. Involved in negative regulation of transcription by competitive promoter binding activity. Acts upstream of or within positive regulation of transcription by RNA polymerase II; protein phosphorylation; and response to organic substance. Located in euchromatin and nucleoplasm. Part of ATF4-CREB1 transcription factor complex. Biomarker of Pick's disease and schizophrenia.

NR:

description
cyclic AMP-responsive element-binding protein 1 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K05870 CREB1; cyclic AMP-responsive element-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000713 True 5590 mRNA 0.55 9 1432992 1447408

Neighbor

gene id symbol gene type direction distance location
AMCG00000712 NA coding upstream 10876 1413795 ~ 1422116 (+)
AMCG00000715 NA coding upstream 37022 1395396 ~ 1395970 (+)
AMCG00000704 NA coding upstream 160027 1256781 ~ 1272965 (+)
AMCG00000708 NA coding upstream 183567 1248741 ~ 1249425 (+)
AMCG00000705 NA coding upstream 199058 1226317 ~ 1233934 (+)
AMCG00000714 ccnyl1,LOC107698526,LOC107733650,LOC107738507,LOC107663902 coding downstream 5204 1452612 ~ 1463637 (+)
AMCG00000717 NA coding downstream 107270 1554678 ~ 1575439 (+)
AMCG00000722 NA coding downstream 142954 1590362 ~ 1594603 (+)
AMCG00000724 dnajb11 coding downstream 166429 1613837 ~ 1621391 (+)
AMCG00000725 NA coding downstream 190947 1638355 ~ 1644638 (+)
G125736 NA non-coding upstream 6049 1426633 ~ 1426943 (+)
G125713 NA non-coding upstream 104353 1323503 ~ 1328639 (+)
G125684 myo1b non-coding upstream 125657 1304095 ~ 1307335 (+)
G125613 NA non-coding upstream 835857 596787 ~ 597135 (+)
G125612 NA non-coding upstream 857500 575290 ~ 575492 (+)
G125767 NA non-coding downstream 147415 1594823 ~ 1609210 (+)
G125756 NA non-coding downstream 170400 1617808 ~ 1621888 (+)
G125955 NA non-coding downstream 844427 2291835 ~ 2293872 (+)
G125986 NA non-coding downstream 980262 2427670 ~ 2520585 (+)
G126036 NA non-coding downstream 1110584 2557992 ~ 2558257 (+)
G125561 NA other upstream 1029401 339640 ~ 403591 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other downstream 152288 1599696 ~ 1606031 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other downstream 221437 1668845 ~ 1698573 (+)
AMCG00000734 NA other downstream 357999 1805407 ~ 1814157 (+)
AMCG00000848 NA other downstream 4013893 5461301 ~ 5465981 (+)
G127134 NA other downstream 7169791 8617199 ~ 8620195 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_05761849_05767932 CREB1, CREB1A, CREB1B coding CI01000009 null 5760983 ~ 5768703 (+)