AMCG00001114


Basic Information

Item Value
gene id AMCG00001114
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15460532 ~ 15463853 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001114
ATGAGTTTAATTCTGCGAAATCTCCAGCAAGTCGTGCCCCTGCGACGGGCGCCACTGCGCAAGCGTGTGGAAATCATACGCGAGATCATGCGCATCCAGAAATTCGACCTGGGTTTGATCTGTGTGGACAACAATAGGATCCAACACATCAATAACACATACAGGCACAAGAACATTCCGACTGATGTGCTTTCATTCCCTTTTTACGaggcatATGTTAGTCTGGTGCTACAGATGACTAATACATTCCTCTATCTGAAGGACCTCAAGGCAGATGAGCTACCAGGGCAGCTGCTCCATCCAGATGAGTGTAACCTTGGAGACATCTTCCTTGGGGTGGAGTATCTGATGAGGCAGTGTGAAGAGGAGGGTCGGGACTTCTACAACACGCTGACTGTAGTTTCAGCGCATGGGATTTGCCACCTTCTAGGGTACAAGCATGAAACTGAGGAGGAGTGGAAACAGATGTTTCAGAAGGAGAGCTATATTCTTAATGAGttcaacaaacacacaggctgTCACCTTGAGCCACTCACCAagaacatttcagaaatgtgagATCTGCCAAGTGATGATTTACAATCTTCAATGGAAATGACAACACTCTCCGTTTCAACAGACCAAAGGTTCTGTTTTTTCAACCcctgttttttaaagcagacaTACCTTAAAGTacctgtatatattattttattaagatattagttaataaattataattctTGTAACATTCATTGTCTTATGAATTTGTGGATTTCTAGATTGTTACATTAACCTTTTCAGTTAAGGGTTGAAAGATGGAGTACAATACCTTGTCAGTGCCCTTGAAATAATTCCCCCATATTAGCCTTTTAGTGTCTGAACACCATTACTGGTTTACAAGTTTAGTGATGATTCAAAGACTGTCAAAATTTGtacaattgattttattttaaaatgagactTGGGGAGATAGTCAAATACTGGATGCTTGACATGTATGCAAGCTAAGCTTTCAACACTGCAGAACTCACTCATACTTTTCACGATGACATCTTCATTTACTCAGCTTAATGCAGGCAGAGTGGTTGGAACTGAGCAGAACCAGTGATGACACCAATGGGTATATGCTTGCAAATAAAACTTATACTGGCCACATTAGATAAAGAAAGGGAACGTGACTGATCAGGACAAGACTGAATTGCCACACAACGAATAGTCAAAacttcaactaaaataaatagatcagtTGGAAGCCTCAGTAGGATTTACGACTTTAAGAAGTATATAACTTAATCACATTTTACTTACATTaactatttgtttaattttcaacaaatacattttaaccaaATTGGCTGTGCAACTTTTACAAAGTAAAGCTgtgtagaaaaagaaaaaaagaaaaaactactGTACTGAGAGCCAGGTTTTTATGCACTGAGGATATCCATTGAAAAGGCTAATGCTTAGAAAGGTCTGCCTCCATCATGTTTGCTTATTATAGAAGgttttaaaagaagaataaaaaaaaaaaaaaaaaaaaaaaaaaaagtaacaccaaaccacacacaaataaca
>TU161548
GtacaattgattttattttaaaatgagactTGGGGAGATAGTCAAATACTGGATGCTTGACATGTATGCAAGCTAAGCTTTCAACACTGCAGAACTCACTCATACTTTTCACGATGACATCTTCATTTACTCAGCTTAATGCAGGCAGAGTGGTTGGAACTGAGCAGAACCAGTGATGACACCAATGGGTATATGCTTGCAAATAAAACTTATACTGGCCACATTAGATAAAGAAAGGGAACGTGACTGATCAGGACAAGACTGAATTGCCACACAACGAATAGTCAAAacttcaactaaaataaatagatcagtTGGAAGCCTCAGTAGGATTTACGACTTTAAGAAGTATATAACTTAATCACATTTTACTTACATTaactatttgtttaattttcaacaaatacattttaaccaaATTGGCTGTGCAACTTTTACAAAGTAAAGCTgtgtagaaaaagaaaaaaagaaaaaactactGTACTGAGAGCCAGGTTTTTATGCACTGAGGATATCCATTGAAAAGGCTAATGCTTAGAAAGGTCTGCCTCCATCATGTTTGCTTATTATAGAAGgttttaaaagaagaataaaaaaaaaaaaaaaaaaaaaaaaaaaagtaacaccaaaccacacacaaataacaggCACAAGTAACCCTAAGGTGTAATGGAAACCCCCAGTGTGTTGGAAATCCCAAGCACAGAGGGGACCACATTAATAAAAGCTTAAGCAAACCAATGAGTTAACtacccaaaataaatattgcaccacttttaaatgcatgaacatAGAACTTTCATGTCTACAGAGACAAAAGGGTCGTCATTTTACACTTTTCTccaattaaaacacatacaagaATAAATCTTGCTTTAATATTACTTCTCAATACAGGAGACAGTAGCATAGTATCAGTGGCAAGGTTTTAAAACTTACAACTTGGGCTATTTAATAAACAGTAATAAAGAGATCAAAACCGTTTTATTGACTGACCCTCAATTTCAATTTACTGCCACTTCTTTAATCCTTGGTAGTACCTCCTTATTAAGAACATGTGAggtactgtgtgtgtacattgtgtgtaaatatatagatatagatatatatacacacacacacacacacacacacacacaca
>TU161551
CCTGACAGCCGCATCGGCTTCCGGGAAGAAACGGTCCCCCCTTGGAGAAGATATTGACTTTTCTTCATGACCTCAAGGCAGATGAGCTACCAGGGCAGCTGCTCCATCCAGATGAGTGTAACCTTGGAGACATCTTCCTTGGGGTGGAGTATCTGATGAGGCAGTGTGAAGAGGAGGGTCGGGACTTCTACAACACGCTGACTGTAGTTTCAGCGCATGGGATTTGCCACCTTCTAGGGTACAAGCATGAAACTGAGGAGGAGTGGAAACAGATGTTTCAGAAGGAGAGCTATATTCTTAATGAGttcaacaaacacacaggctgTCACCTTGAGCCACTCACCAagaacatttcagaaatgtgagATCTGCCAAGTGATGATTTACAATCTTCAATGGAAATGACAACACTCTCCGTTTCAACAGACCAAAGGTTCTGTTTTTTCAACCcctgttttttaaagcagacaTACCTTAAAGTacctgtatatattattttattaagatattagttaataaa

Function

GO:

id name namespace
GO:0044238 primary metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001114 True 1560 mRNA 0.38 4 15461067 15463358
TU161548 False 1141 lncRNA 0.34 1 15462713 15463853
TU161551 False 520 lncRNA 0.44 4 15460532 15462511

Neighbor

gene id symbol gene type direction distance location
AMCG00001112 NA coding upstream 109172 15351085 ~ 15351360 (+)
AMCG00001109 NA coding upstream 136893 15318950 ~ 15323639 (+)
AMCG00001108 NA coding upstream 142094 15295104 ~ 15318438 (+)
AMCG00001103 NA coding upstream 177429 15269252 ~ 15283103 (+)
AMCG00001101 NA coding upstream 196522 15261751 ~ 15264010 (+)
AMCG00001113 cnot9,LOC103363318,LOC106575212,LOC106574282,LOC105022524 coding downstream 11971 15475824 ~ 15481816 (+)
AMCG00001121 plcd4a,LOC107739328,LOC107600964,LOC106575211,LOC103363317 coding downstream 23300 15487153 ~ 15499125 (+)
AMCG00001122 LOC107673730,LOC107555925,LOC107714219,LOC107741911 coding downstream 47658 15511511 ~ 15518433 (+)
AMCG00001123 NA coding downstream 54620 15518473 ~ 15524200 (+)
AMCG00001120 NA coding downstream 61993 15525846 ~ 15529959 (+)
G128827 NA non-coding upstream 47425 15412780 ~ 15413107 (+)
G128815 NA non-coding upstream 101518 15358643 ~ 15359014 (+)
G128772 NA non-coding upstream 134312 15325994 ~ 15326220 (+)
G128747 NA non-coding upstream 249207 15210353 ~ 15211325 (+)
G128697 NA non-coding upstream 386630 15071073 ~ 15073902 (+)
G128919 NA non-coding downstream 102548 15566401 ~ 15886602 (+)
G128928 NA non-coding downstream 417502 15881355 ~ 15882299 (+)
G128938 NA non-coding downstream 457520 15921373 ~ 15921574 (+)
G128939 NA non-coding downstream 457821 15921674 ~ 15922039 (+)
G128941 NA non-coding downstream 459179 15923032 ~ 15924810 (+)
G128823 NA other upstream 39652 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 276140 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 3075490 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 3449107 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 5306345 10100283 ~ 10154187 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 2559207 18023060 ~ 18044251 (+)
G129453 NA other downstream 3082040 18545893 ~ 18547915 (+)
G129442 NA other downstream 3091298 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 3424431 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 3579451 19043304 ~ 19142145 (+)

Expression


Co-expression Network