G129365 (zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553)


Basic Information

Item Value
gene id G129365
gene name zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18023060 ~ 18044251 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162207
CGTTTAATGGCACTCTTGAGACAGACTTGATGGCTGTATGTCAACAGCCTACTGTGCACACTGCAGTTTTGTACTAAATCAGTGCGCTTGTGGCTTTGAACGCAATTGCCAATATAAAATTAAGGCATCTGGGCAGCTACTTTTTCAGAGGAAAGACAAATGTTACATAAGTGTCTCAACAGTCGGGTTTCCATTTCAGTCGCCTGACCTACAACATGACAACATTTGCGATGCTTGATACTAGAAAGGAAACTGTGAGGATCTGTGCGCCGGCGGTTTGAAGCGCTTCCTCCAGATGCAGACATCTGGGCAAGTGACCAGGCTGTGCGTTATCCGCCAGTAACCGGACCCCACACTTCCCCTTTAAGTGCTGAGTCGCAATAAAGTTCAACACGGGCGTTTTTAAAGGGAAGAGCGAGAGCACGGCTGGGAGACTCTGGGGCGTCGCGCTTCTCCGCCACCGGACCGAGTTGGATCTAACAAAAGCCTCAGACAAGGCGCTGCGCACTGGAAGCGGGTTCTTCCACAAGCAGACATGCTTTCTGCGCGAATCCGACGTTGACAGAGCCTAGCATGTGATTTATGGTTATTACTCTTTAATTTGGCAGTGCCTCAACTTTCCCACCGGCGCAAACTCGTGATGCCAGTTATGTATTTGTACACGCTATTTGGAGAGGGTGAGGACCAGTAAAGTTGCTTTGGCAAGTATATGTTCAGAACTGTTTTAATCGCAGCCGGAGAGGACGTTATTTTCCCCCGTCTTAAACGACGCGGGGGTGGAGGTCTCCTCTGGTCCGGTCCGGTCCGGTCCCGGGATTGATGCCATGACCGCCTCGGGAGGCCAGCGGGTGCCCAAGAGTGACAAGCTGGACGAGGCGCAGGCGCTGGCCAAGAGCTGCGCCGGGAGACCCGACTTCCTGCCCTGCGACGGGCTCTCCATCTGCGCCACCCACAGCCACGGAAAGTGCTTCAAACTGCACTGGTGCTGCCATCTGGGCTGGTGCCACTGTAAATATGTGTACCAGCCCATGACCAATGTGGTGCAGCTCCCCAGCACCCCGGTGCCGGCCACGCCGTCCGACAACACCGACACCATCGACCTGTCCATGTCTCTGACCAAGCGCTTCCTCAAGACGGCCCCCTGCTTCCAGCCGCCCCCCTACCCCGAGTCCCCCAAGTACTGCCTGATCTCCGAGCTCTTCATCGACGACTACCAGGTGAAGCGCATCAACGGCAAGATGTGCTACGTGCAGAGACCCCCCCCCACCGCGCCGGCAGCCCAGCCCACCCAGCTGCACCCCCAGCCCCAC

Function

symbol description
zgc:162707 Involved in circadian behavior and nervous system development. Orthologous to human C3orf70 (chromosome 3 open reading frame 70).

NR:

description
UPF0524 protein C3orf70 homolog B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162207 True 1310 TUCP 0.56 2 18023060 18044251

Neighbor

gene id symbol gene type direction distance location
AMCG00001181 NA coding upstream 11123 17989876 ~ 18011937 (+)
AMCG00001177 igf2bp2a,igf2bp2,LOC107596519,LOC102776863 coding upstream 51827 17951597 ~ 17971233 (+)
AMCG00001180 igf2bp2,igf2bp2a,LOC107752879,LOC107668393,LOC107749880 coding upstream 120554 17901050 ~ 17902506 (+)
AMCG00001178 tra2b,LOC108258698 coding upstream 125657 17890483 ~ 17897403 (+)
AMCG00001173 NA coding upstream 142671 17872517 ~ 17880389 (+)
AMCG00001184 NA coding downstream 193680 18237931 ~ 18252467 (+)
AMCG00001186 NA coding downstream 222825 18267076 ~ 18300206 (+)
AMCG00001191 NA coding downstream 280355 18324606 ~ 18347058 (+)
AMCG00001190 NA coding downstream 330248 18374499 ~ 18411054 (+)
AMCG00001188 NA coding downstream 417847 18462098 ~ 18494601 (+)
G129343 NA non-coding upstream 46124 17972009 ~ 17976936 (+)
G129255 NA non-coding upstream 330534 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 472269 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 875991 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 1130699 16889638 ~ 16892361 (+)
G129552 NA non-coding downstream 752599 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1043897 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 1061461 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 1328772 19373023 ~ 19377913 (+)
G129689 NA non-coding downstream 1593351 19637602 ~ 19653509 (+)
AMCG00001114 NA other upstream 2559207 15460532 ~ 15463853 (+)
G128823 NA other upstream 2602180 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2838668 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5638018 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 6011635 11999664 ~ 12011425 (+)
G129453 NA other downstream 501642 18545893 ~ 18547915 (+)
G129442 NA other downstream 510900 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 844033 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 999053 19043304 ~ 19142145 (+)
AMCG00001223 s100b,LOC106574292 other downstream 1434009 19478260 ~ 19492344 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000036_01839255_01848818 CUNH3ORF70 coding CI01000036 null 1837149 ~ 1848818 (-)