AMCG00001184


Basic Information

Item Value
gene id AMCG00001184
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18237931 ~ 18252467 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001184
ACAGCCATTACCACCCAGGAACAATGGGATGAGATGCTGGCCATGAAAGGATTAAATGTCATAGACATCTATCAGCGGTGGTGTGGGCCCTGCCGAGCCATTGTCAGCCTCTTCCGTAAAATCAAAAATGAACTGGCAGAAGACCTCTTACATTTTGCCACGGCAGAGGCAGATGGCATTGATGCCCTGGAGCGATACTGCAGAAAGTGTCAGCCTGTCTTTCTGTTTTATGCAGGAGGTCAGCTGGTAGCTGTCGTGAGGGGGGTCAATGCTCCTCTTCTTCAGAGGACGATTGTGGAGCAGCTCGCCGCAGAGAAGGCAGTGATGGAGAAGGGCCTTGAGCGCAAATCAATTCAAGATGAAGGCCTGGTGGAAGAGgagaagcaggaagagatgaATGACAAGGAGCAAAGTGATGAAGAGGTCCTTGCAGTTCCTGCCAGCAAGTCGTGCACTGTGGCAATCATCAAACCTGATGCAGTGGCACATGGCCAAGCCAACGAAATCATCATGAAGATTCAAGAAGCTGGATTTGAGATTGTAGCCAACGAAGAAAGGACACTGAGCGAGGCCGAAGCACGAGATTTCTACCAGCACCGGGCCTCAGAGCCCTACTTCGAAGAGTTGGTGCAGTTCATGTCTAGCGGCCCATCCCACGTCTTAGTGGTGTCCAAGCCCGAGGGCTGTGATGATGTCATCCCAGAGTGGAGGGAGTTCATTGGCCCCACTGATGTTGAGGAAGCCAGGAGGGAGAAACCAGAGAGTGACGACAGTCAGCAAGCCAGTAAAGAACTGGCGTTCTTCTTCCCCAACTTCAAAACTAATTCTGCAGACGCACATAGAGAGGAGACGGAGAAGGTGGCAGTGGAGCGGACATTGGCCCTCATCCGGCCTGACATTTTAAAGGCAAAGAAAGAGGAGATCTTACAGCGCATCCAGGAGGCTGGCTTCACCATCGCCATGCAGAAGGAGCTGATTCTGACCGAGGAGCAGGTGTGCCAGTTCTACAGTGAGCACGTGGAGGAGGAATACTTCCCTGCACTGCTCAGCAACATGACCAGTGGGCCCGTCCTGGCGCTTGCTCTGGCCAAGATGGGAGCGGTGGAGCAGTGGAGGAATATCCTGGGTCCAAAGGACATCATGCAAGCCAAAGAGGATGCCCCTGACAGCCTCAGAGCCCAGTTTGCAGTGGAGAGTGTCCCGATAAACCAGCTGCATGGCAGTGGCTCCAGTGAAGACGCAGCCCGGGAGCTCAGTTTCTTTTTCCCCCAGGAGCAGACCCTGGCAGTCATCAAGCCAGACGCTATGGCAGAGCACAGAGATGAAATCCTCGAGAAGATCTGCAGTGGAGGCTTCACGATCTCCCAGATGAAAGAGACCATGCTGTCTAGAGAGATAGCCGAGGAGTTCTACAGAGAGCACAAGGGCAAGCCATTCTTTGAGAGTCTGGTTGACTTCATGTGTCGAGGTCCGTGCATGATGATGACTCTAAACAAGGAGAATGCCGTGGAGGAGTGGAGGGCCATGATGGGCCCAACAGACCCAGTAGAAGCCCAGCAGACCGCCCCGGATTCCCTGAGGGCCCGCTTCGCCAAGGACATCCTGGAGAACTCAGTGCACGGCTCCTCTAGCCAGCAGCAAGCCATGGAGAAGATCCGCTTCATCTTCGGCGACATTACACTGGAGGCAGGAGAACGCCTCCAAGGCACTGCCACCCTCTCTGGTGGGCACTTTCATGGTGGTATATTGTGGGGGGGATGTCTGATGGGGTTGCATACTCCCTATGCTCCAGCCCTGCCTGCAGATGCAGAGGCAACTGAGCAGACACAGGTGTCCCAGGAGGCGGCCTCCCAGAGCGCCGAGCAGCAAGAGCCTGCAGAGACGCACAGTCAGACAGGAGATGCTCCAGCCCTGCCTGCAGATGCGGAGGCCACTGAGCAGACACAGGTGTCCCAGGAGTCGGCCTCCCAGAGCGCCGAGCAGCAAGAGCCTGCAGAGACGCACAGTCAGACAGGAGGAGATGCCTGGACAATCCGATGCGGAGTCAATCGGGCAGATCTGGAGAGCCACTCGATTGGCCTTCCCTGCAGCGAGCGCAGAGCAGACCAAGAGACTGGTCTGGGCGCAGAAGAAAAGAGCGCCAGGACAGGCAGCTGCGGCACCAGCGAGAAAGACCTGAATCCGCAGGATGGCCGTGACAAGCTCCTGCTACAGGCAGCAACTGAGCCAGTGAGCAgtgcccagcagcagcaggaggcaGGTGAGTCCAGCGGCGAGAAACACAAGAGGGACTTTGAACAGAGAGCACAGATAAATGGCTGGAGCGACAGAGAGAAGCTGATACAGTTGACGAGATGCTTGAATGAGGAGGCCCGGAGCCGCTGGTGGCACAGCGGCTTCCACTCCAGTGGTAGATTCTATGTGCCCGAAGGGGAGGCACGGCGAGAGAGCAGACGGGTGGTGGCCAACCTAAAGCACCACCCCAACAGCAGATGGTGGTTGCCCATGCAAGGGGTCCACCAAAGGCACGTGTTCCACACGGGCCTACGATATCTCGACAATCCAAATACACTAAAGGCAATCTAG

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K19868 NME8, TXNDC3; thioredoxin domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001184 True 2586 mRNA 0.56 19 18237931 18252467

Neighbor

gene id symbol gene type direction distance location
AMCG00001182 NA coding upstream 193332 18042362 ~ 18044599 (+)
AMCG00001183 NA coding upstream 213730 18012458 ~ 18024201 (+)
AMCG00001181 NA coding upstream 225994 17989876 ~ 18011937 (+)
AMCG00001177 igf2bp2a,igf2bp2,LOC107596519,LOC102776863 coding upstream 266698 17951597 ~ 17971233 (+)
AMCG00001180 igf2bp2,igf2bp2a,LOC107752879,LOC107668393,LOC107749880 coding upstream 335425 17901050 ~ 17902506 (+)
AMCG00001186 NA coding downstream 14609 18267076 ~ 18300206 (+)
AMCG00001191 NA coding downstream 72139 18324606 ~ 18347058 (+)
AMCG00001190 NA coding downstream 122032 18374499 ~ 18411054 (+)
AMCG00001188 NA coding downstream 209631 18462098 ~ 18494601 (+)
AMCG00001189 NA coding downstream 246638 18499105 ~ 18505130 (+)
G129343 NA non-coding upstream 260995 17972009 ~ 17976936 (+)
G129255 NA non-coding upstream 545405 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 687140 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 1090862 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 1345570 16889638 ~ 16892361 (+)
G129552 NA non-coding downstream 544383 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 835681 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 853245 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 1120556 19373023 ~ 19377913 (+)
G129689 NA non-coding downstream 1385135 19637602 ~ 19653509 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other upstream 193680 18023060 ~ 18044251 (+)
AMCG00001114 NA other upstream 2774078 15460532 ~ 15463853 (+)
G128823 NA other upstream 2817051 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 3053539 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5852889 12288950 ~ 12385042 (+)
G129453 NA other downstream 293426 18545893 ~ 18547915 (+)
G129442 NA other downstream 302684 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 635817 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 790837 19043304 ~ 19142145 (+)
AMCG00001223 s100b,LOC106574292 other downstream 1225793 19478260 ~ 19492344 (+)

Expression


Co-expression Network