AMCG00001177 (igf2bp2a,igf2bp2,LOC107596519,LOC102776863)


Basic Information

Item Value
gene id AMCG00001177
gene name igf2bp2a,igf2bp2,LOC107596519,LOC102776863
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17951597 ~ 17971233 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001177
ATGGTGAGTGTCAGTGACCCTCTCCTGAGACACTGTCACTGCGGCTACTGTAGTACTAACAAGCCGGCTTCTGGAAGCTTCTGGGCCGGGGAGTGCTGGAGCCCAGGGCCAGGCCCAGGGCAGGAGCTGGCGGAGTCCCTGGCTGCCTGGAGGGAAACAGCCCCAGCTGTTGGAGTGGTGGCCTGGCAGCTCTCCTGGAGTCGAAGGATTCAAATCCGGAACATTCCCCCTCATTTGCAGTGGGAGTTTTGTGTAACGACCCATGTTCTTCACTCTAGAGCGATTGAGAAGTTGACTGGACACCAGTTTGAGGACTACGCCTTCCGTGTGTCGTACATCCTGGACGTGGACGCTGTGCCACCTGCCCCGGTGCCGCGCTCTCGGCGCACTGGACGGCAGTCACGAGACCAGGGCGTCCCTCAGCCCGGGCCCTCTGGGAGCCCGGCCGGGCCCCGCAACAAGCAGCATGATTTCCCCCTGCGCATGCTGGTGCCCACGCAGTTTGTGGGAGCCATCATTGGCAAGGAAGGGCTGACCATCAAGAACGTCACCAAGCAGACCCAGTCCAAGGTGGATATTCACCGGAAGGAGAATGCTGGGGCTGCAGAGAAACCCATCACCATCCACTCCACTCCCGAGGGGACTTCCTCAGCGTGCCGCATGATCATGGAGATAATGGAGAAGGAGGCCAGTGAGACCAAGGCAGCTGAGGAGATTCCACTGAAAATTCTTGCCCACAACAGTTTAGTGGGCAGGCTGATTGGTAAGGAGGGACGAAACCTGAAGAAGATTGAACAAGAGACTGGGACCAAGATTACCATCTCCTCCTTACAGGACTTAACCATTTACAACCCAGAGAGGACCATTACTGTAAAAGGCAGTATTGAGGCCTGCTGTAAGGCAGAAGTAGAAATcatgaagaagttaagagaagCCTATGAGAATGACATTGCTGCTATAAATCAACAAGCCAACTTGATCCCTGGGCTGAACCTGAACGCTTTGGGTATTTTCTCGACTGGACTGTCGGTGCTTCCTCCTTCGGCTGGACCCCGCGGAGCTGCCCCCACACCCGCCACCGGATACACCCCTTTCCTAAGTCACTCGTCGCACCTGAGCGGTCTGTATGGGGTCCCTCCTGCCAGCGCCATATCCCACCAGCACTCAGCCTCCATCTTTCAGCAGGCTCCAGAGCAGGAGGTGGCATACCTGTTTATTCCGACTCAGGCTGTCGGGGCCCTCATCGGTAAGAAAGGACACCACATCAAACAGCTGGCCCGATTCGCTGGAGCCTCCATCAGGATCACTCCTGCTGAGGGTCCGGACGTCACAGAGAGGATGGTCGTCATTACAGGGCCGCCTGAGGCTCAGTTTAAGGCCCAAGGTAGAATATTCGGAAAGCTGAAGGAGGAGAATTTCTTCAGCCCGAAAGAGGAGGTGAAGCTGGAGACCCACATCAAAGTGCCCTCATGTGCAGCAGGGAGAGTCATCGGCAAAGGAGGCAAAACGGTGAATGAACTGCAGAACCTCACTAGTGCAGAGGTCATCGTACCCCGGGACCAAACTCCAGACGAGAACGACGAAGTCTTTACTGCACAGCGAAAGATCAGGGAGATCATACAGCAGGTCAAACAGCAGGAACAAAAACACCAGCAGGGAGCTCCCACGCCGCACCTCTCTAAGTGA

Function

symbol description
igf2bp2a Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in nervous system development; regulation of RNA metabolic process; and regulation of gene expression. Predicted to act upstream of or within mRNA transport. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human IGF2BP2 (insulin like growth factor 2 mRNA binding protein 2).
igf2bp2 Enables mRNA 3'-UTR binding activity and mRNA 5'-UTR binding activity. Predicted to be involved in negative regulation of translation; nervous system development; and regulation of RNA metabolic process. Located in cytoskeleton; cytosol; and nucleus. Implicated in type 2 diabetes mellitus.

NR:

description
IGF-II mRNA-binding protein 2a variant C

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K17392 IGF2BP2; insulin-like growth factor 2 mRNA-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001177 True 1686 mRNA 0.56 13 17951597 17971233

Neighbor

gene id symbol gene type direction distance location
AMCG00001180 igf2bp2,igf2bp2a,LOC107752879,LOC107668393,LOC107749880 coding upstream 49091 17901050 ~ 17902506 (+)
AMCG00001178 tra2b,LOC108258698 coding upstream 54194 17890483 ~ 17897403 (+)
AMCG00001173 NA coding upstream 71208 17872517 ~ 17880389 (+)
AMCG00001174 NA coding upstream 84710 17858352 ~ 17866887 (+)
AMCG00001175 NA coding upstream 146915 17793393 ~ 17804682 (+)
AMCG00001181 NA coding downstream 18643 17989876 ~ 18011937 (+)
AMCG00001183 NA coding downstream 41225 18012458 ~ 18024201 (+)
AMCG00001182 NA coding downstream 71129 18042362 ~ 18044599 (+)
AMCG00001184 NA coding downstream 266698 18237931 ~ 18252467 (+)
AMCG00001186 NA coding downstream 295843 18267076 ~ 18300206 (+)
G129255 NA non-coding upstream 259071 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 400806 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 804528 17144190 ~ 17147069 (+)
G129071 NA non-coding upstream 1059236 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1889418 16022258 ~ 16062179 (+)
G129343 NA non-coding downstream 776 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 825617 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1116915 19088148 ~ 19090238 (+)
G129609 NA non-coding downstream 1134479 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 1401790 19373023 ~ 19377913 (+)
AMCG00001114 NA other upstream 2487744 15460532 ~ 15463853 (+)
G128823 NA other upstream 2530717 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 2767205 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 5566555 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5940172 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 51827 18023060 ~ 18044251 (+)
G129453 NA other downstream 574660 18545893 ~ 18547915 (+)
G129442 NA other downstream 583918 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 917051 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1072071 19043304 ~ 19142145 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_00002995_00023250 IGF2BP2, IGF2BP2A coding CI01000037 null 2155 ~ 23350 (-)