G129597


Basic Information

Item Value
gene id G129597
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 19088148 ~ 19090238 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162512
aagtctggtcagaattggccttcatggaagacctgctgccaaaaagccatacctccaaagtggcaacaaggccaagcaactcaactatgccaCTGGACACTCAGGCAAGCCAGCAGAGGAGTCGCCTAGCTCACCCCagttaagtatatattttttcacgtGTCTTATACTTTAGCTAAGAGATGCATCGATTGTTTAAGTGGCTACTAGTTTAGTAAAGAGTTAGatatattttgcacctgtattgtagtaatggCAGTGACTGTTAGTTAATTAGGAACTGACACATTTTGTCCTTAGGTTGACACGCAGtgtctgtaaatcagaagcggttacattgtaggctgttgttattatttagcattgttgcaagctattgatcagtgtaactgcgtgtgtctggcacagTCTTTGTctatattcagatttaaagTGGCCATTAATTTTACTATGagcagtcctgcctgggagggattgtGCCATCCCGAGAGCCTTGTGAGTTTGTCTAAATTACAGTTTCAGTTAGCCGGAGTGTTGTTGTCGTTCGTTTGGACAGTCCTGTGTACAGACAGCGCAGAGTCTCAGTGCACacgtcacagacacacacagctctgctgATGAAGTCATCGTGCGTCATGTGGGTGTGTGACACTCAGGGGGAGGGGCTaacacacacattgatacaCTTTAACATCGAGCTGAAGTTTCTGGAACTCTGACACTTCCGCTTCTCAGCTCTGCCCTCTGACCCGGCGCGCCCCCGTCTCCACAGAAACCAATGGGAGCTGCTGCGCATGCCCAGTGTGAAGCCACTTTAACCCTTGCCGGTGAGGCGCAAACGAAGTGCTGCCATTTCCATTAAAGTAATACACGAGAGATCGCACTCAATTTAGGTGTTGAGGCCACCTGCTCCAGGGCGACGTTCCTCACTGGGGGCTTCAGAGGGGCAGCTCCACCGGCACTTCCACTTCTGGCGGCAGGGGGCGCAGAGGAGATTCCCTCCCTGGTACTGCAATCATGGGTGCCGCAATGAAGCCCGAGCACAGCGTGCAGGAGAAGAGCTCCGAGTCGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162512 True 1074 lncRNA 0.50 2 19088148 19090238

Neighbor

gene id symbol gene type direction distance location
AMCG00001207 dip2a coding upstream 48730 18982280 ~ 19039418 (+)
AMCG00001202 NA coding upstream 180531 18891932 ~ 18907617 (+)
AMCG00001195 NA coding upstream 303905 18779934 ~ 18784243 (+)
AMCG00001189 NA coding upstream 583018 18499105 ~ 18505130 (+)
AMCG00001188 NA coding upstream 593547 18462098 ~ 18494601 (+)
AMCG00001212 NA coding downstream 3919 19094157 ~ 19094534 (+)
AMCG00001210 NA coding downstream 33824 19124062 ~ 19130277 (+)
AMCG00001209 NA coding downstream 42797 19133035 ~ 19138617 (+)
AMCG00001221 NA coding downstream 71403 19161641 ~ 19186416 (+)
AMCG00001220 NA coding downstream 99813 19190051 ~ 19192097 (+)
G129552 NA non-coding upstream 286108 18796850 ~ 18802040 (+)
G129343 NA non-coding upstream 1111212 17972009 ~ 17976936 (+)
G129255 NA non-coding upstream 1395622 17691507 ~ 17692526 (+)
G129221 NA non-coding upstream 1537357 17487392 ~ 17550791 (+)
G129080 NA non-coding upstream 1941079 17144190 ~ 17147069 (+)
G129609 NA non-coding downstream 15474 19105712 ~ 19108737 (+)
G129674 arl4c,LOC105900932,LOC103482382,LOC105937943 non-coding downstream 282785 19373023 ~ 19377913 (+)
G129689 NA non-coding downstream 547364 19637602 ~ 19653509 (+)
G129695 NA non-coding downstream 691012 19781250 ~ 19781607 (+)
G129696 NA non-coding downstream 691409 19781647 ~ 19781862 (+)
AMCG00001203 NA other upstream 198424 18888284 ~ 18889724 (+)
G129442 NA other upstream 529974 18555151 ~ 18558174 (+)
G129453 NA other upstream 540233 18545893 ~ 18547915 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other upstream 1043897 18023060 ~ 18044251 (+)
AMCG00001114 NA other upstream 3624295 15460532 ~ 15463853 (+)
AMCG00001223 s100b,LOC106574292 other downstream 388022 19478260 ~ 19492344 (+)
AMCG00001229 NA other downstream 1374125 20464363 ~ 20496368 (+)
AMCG00001236 LOC105905668,LOC108414761 other downstream 1521034 20611272 ~ 20676857 (+)
AMCG00001241 NA other downstream 1816133 20906371 ~ 20925240 (+)
G129843 LOC107575789 other downstream 1851834 20942072 ~ 20942397 (+)

Expression


Co-expression Network