Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00001191 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030137.1 |
| NCBI id | CM030137.1 |
| chromosome length | 27060302 |
| location | 18324606 ~ 18347058 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0005795 | Golgi stack | cellular_component |
| GO:0005802 | trans-Golgi network | cellular_component |
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K10659 | MARCH4_9_11; E3 ubiquitin-protein ligase MARCH4/9/11 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00001191 | True | 1227 | mRNA | 0.61 | 4 | 18324606 | 18347058 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00001186 | NA | coding | upstream | 24400 | 18267076 ~ 18300206 (+) |
| AMCG00001184 | NA | coding | upstream | 72139 | 18237931 ~ 18252467 (+) |
| AMCG00001182 | NA | coding | upstream | 280007 | 18042362 ~ 18044599 (+) |
| AMCG00001183 | NA | coding | upstream | 300405 | 18012458 ~ 18024201 (+) |
| AMCG00001181 | NA | coding | upstream | 312669 | 17989876 ~ 18011937 (+) |
| AMCG00001190 | NA | coding | downstream | 27441 | 18374499 ~ 18411054 (+) |
| AMCG00001188 | NA | coding | downstream | 115040 | 18462098 ~ 18494601 (+) |
| AMCG00001189 | NA | coding | downstream | 152047 | 18499105 ~ 18505130 (+) |
| AMCG00001195 | NA | coding | downstream | 432876 | 18779934 ~ 18784243 (+) |
| AMCG00001202 | NA | coding | downstream | 544874 | 18891932 ~ 18907617 (+) |
| G129343 | NA | non-coding | upstream | 347670 | 17972009 ~ 17976936 (+) |
| G129255 | NA | non-coding | upstream | 632080 | 17691507 ~ 17692526 (+) |
| G129221 | NA | non-coding | upstream | 773815 | 17487392 ~ 17550791 (+) |
| G129080 | NA | non-coding | upstream | 1177537 | 17144190 ~ 17147069 (+) |
| G129071 | NA | non-coding | upstream | 1432245 | 16889638 ~ 16892361 (+) |
| G129552 | NA | non-coding | downstream | 449792 | 18796850 ~ 18802040 (+) |
| G129597 | NA | non-coding | downstream | 741090 | 19088148 ~ 19090238 (+) |
| G129609 | NA | non-coding | downstream | 758654 | 19105712 ~ 19108737 (+) |
| G129674 | arl4c,LOC105900932,LOC103482382,LOC105937943 | non-coding | downstream | 1025965 | 19373023 ~ 19377913 (+) |
| G129689 | NA | non-coding | downstream | 1290544 | 19637602 ~ 19653509 (+) |
| G129365 | zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 | other | upstream | 280355 | 18023060 ~ 18044251 (+) |
| AMCG00001114 | NA | other | upstream | 2860753 | 15460532 ~ 15463853 (+) |
| G128823 | NA | other | upstream | 2903726 | 15409112 ~ 15420880 (+) |
| AMCG00001098 | NA | other | upstream | 3140214 | 15150275 ~ 15184392 (+) |
| AMCG00001022 | NA | other | upstream | 5939564 | 12288950 ~ 12385042 (+) |
| G129453 | NA | other | downstream | 198835 | 18545893 ~ 18547915 (+) |
| G129442 | NA | other | downstream | 208093 | 18555151 ~ 18558174 (+) |
| AMCG00001203 | NA | other | downstream | 541226 | 18888284 ~ 18889724 (+) |
| G129594 | bzw1a,LOC108414345,LOC105905677,LOC103358003 | other | downstream | 696246 | 19043304 ~ 19142145 (+) |
| AMCG00001223 | s100b,LOC106574292 | other | downstream | 1131202 | 19478260 ~ 19492344 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_037463 | march4 | coding | NC_007120.7 | CM002893.2 | 52492639 ~ 52539704 (+) |
| grasscarp (Ctenopharyngodon idella) | CI01000049_00980509_01030584 | NA | coding | CI01000049 | null | 980366 ~ 1030597 (-) |
