AMCG00001128 (adarb1,adarb1b,LOC106581860,LOC106586125,LOC105907970)


Basic Information

Item Value
gene id AMCG00001128
gene name adarb1,adarb1b,LOC106581860,LOC106586125,LOC105907970
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 15754698 ~ 15800157 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001128
ATGGGGGCCTTCTACTGCCTGATCCGGAGGAGGTTCAAGAGGAGACGGAAGAAACGGTCCGAACGCAAAGgTATCAACGGCAAAGGAATGACTGAAGACAGAGCAAGTGTACGCCAGACCAGGAGTCAGCAGAAATACTTTGCTATGGATGTGGATGAAGAGGAAAATATGAGTTCGTGCAGCACCGACGTAAAGGAAAACCGCAACCTGGGCAACGTCTCCTCCAAGGAGGCCGCTGGCGAGGCGGCACAGCTCCCCAACGGAGGTGGCAGCAGCCGTAAACGCCCTCTGGAAGAAGGCAATAATGGCCATGCTCATTCCAAGTTCCGTCCAAAGAAGCGAAAGAAAACCCCGGGGCCCGTTCTGCCCAAAAACGCTCTAATGCAGCTGAATGAGATTAAACCAGGGCTCCAGTACAAGCTGCTGTCACAGACCGGGCCTGTTCACGCGCCTGTCTTTGTAATGACAGTGGAGGTCAACGGGCAGTTGTTTGAAGGCTCTGGCCCTACTAAGAAGAAGGCTAAGCTCAATGCAGCTGAGAAGGCCCTGCGCTCTTTTGTGCAGTTCCCCAATGCCTCAGAGGCCCACATGGCCATGGGTCGCACCCTGACCGTCAACACGGACTTCACCTCCGACCAGGCTGACTTTCCTGATATGCTTTTTAACGGCTTTGAGACACCAGCGCCGCCCGACGAGTCCTTTTACCTGGGCTCAAACGGCAACGGCTCCTTCAGTTCCTTGGGGGAGTACCTCCTCCCCGCCACCGGGGGAGTCAACAGTCTGAGTCAGTCTCCGCTGCCAGCCCCCTCCGCTTACGTGTCTCCCTCCAGTGGGAAGAACCCCGTGATGATCCTGAACGAGCTGCGCCCCGGCCTGAAGTATGACTTTGTCTCAGAGAGCGGGGAGAGTCATGCCAAGAACTTTGTCATGTCCGTGACCGTGGATGGGCAGACTTTCGAAGGCTCAGGAAGGAACAAGAAACTGGCCAAGGCCCGGGCCGCCCAGGCTGCCCTCTCCAGCCTGTTCAACATGCAGCTGGATCAGACGCCCTCTCGGCAGCCCATTCCCAGAGAGGGCCTGCAGCTGCATCTGCCACAGGTGCTAGCAGATGCCGTTTCCCGGCTCGTAGTGGATAAATTCAGTGAGCTGACCGACAATTTCACATCTCCTCATGCACGCAGGAAAGTCTTGGCAGGGGTTGTCATGACAACAGGCACCGATGTAAAGGATGCCCAGGTGATTTGCGTTTCCACAGGAACTAAGTGTATAAACGGGGAATACATGAGCGATCGTGGCCTAGCCCTCAACGACTGCCATGCTGAAATTGTTGCCCGACGATCCCTCATCAGGTACCTCTATGCCCAGCTGGAGCACTTCTTGAGCGGCAACAAAGAGGAGCACCAGAAATCTATATTCGCAAGATGTGACAAAAACGGCTACAAGCTGAAGGACAATGTGCAGTTTCATCTTTACATCAGCACCTCACCATGTGGGGACGCCAGGATTTTCTCCCCACATGAAGCCGGAGTAGAAGACCAAGGTGACAGGCACCCGAACAGGAAGGCTCGAGGACAGTTGCGGACGAAGATCGAGTCAGGGGAGGGGACGATTCCCGTGAGGTCCAGCAACACCATCCAGACGTGGGATGGGGTGCTGCAGGGCGAGAGGCTACTCACCATGTCCTGCAGTGACAAGATAGCCAGGTGGAATGTGGTGGGCATCCAGGGATCTCTAATGAGCTACTTCACCGAGCCCATCTACTTCTCCAGTATCATCCTGGGCAGCCTCTACCATGCCGACCATCTCTCCAGAGCCATGTACCAGAGAATAGCTGACATTGAGGACCTACCCCAACAGTTCACACTCAACAGACCTCTGCTAAGTGGTATTAGTAATGCTGAAGCACGGCAACCTGGAAAAGCTCCCAATTTCAGTGTAAACTGGGCAGTAGGAGACCAGTCTCTAGAGGTCATTAACGCCACCACGGGGAAGGACGACATGGGCCGACCGTCACGGCTCTGCAAGCACGCGCTCTACAGCCGCTGGGTGCGACTCCACTCAAAGCTTTCACCGACCCTGAGAATCAAAATGAGCAAGCCGAGTTCCTACCATGATGCCAAACAAGCTGCTGAAGAATACCACTCTGCCAAGCAAGCTCTCATCAAGGCGTTTCAGAAGGCCGGGCTCGGGGCCTGGGTGAAAAAGCCCATAGAGCAGGACCAGTTCTCTCTCAACCCCTGAGAGCAGCACGACCGGAGGGACGGACTGAGGAGAAATACCAGCTGCTGAGACTtcgtgttgtgtgtgtgtctgtgttgagACCTTTCCTGCTGCTTTATTTTCCTCTCCtatccttttgttttattttttctgtgtaatagttttattattaaggTTGAATCCACATAACATGAAGTCTTGCTGTTTTAAACTGGAacccttttttatgttttctttattttaattaaattttttttaagaatatgtaaagtaacattttataattaagaaGTGAAAAAAGaaggaacaaaaagaaaagtaagaGCCAGCTATCTAGACAATTTTGCCTGAAGAGCACGTTTATGCCAAATAATAGTAGAAAGTGGTTTAAATTTGACCTCTCAGCTGTGTTTAGAGCTAAGGTTagggttttatgttttatttttttctctcgcTTCTGAGAGAACTTCTCATTCTGACTATTGCTGTCCTTTGTCACTGACGCCGAGCTGACAGGAGTTTGTCTTCAACTCAGATTACATTGGAAATGCTGAACtacctgcattatttattttttattcattctgAAAGAACATTTCTCAAACTGtgagaaacactttttttctcccttaatTCTGTAatactggaaaacaaatgttaaacatttaGACTTCCAGAGATGGTTTTAAACTTCTATGCTGCCGAGATAatttaaagtacagaaaaattGAAAGGATTAAGATTTTTATAGTAAATTTAacataaactgaaaatgtatttaatattaaacagaatGCCATGCAAccatttttctgttgttggtGGCTATTGTAGGAGAGGAGGTGAtttttacaattacattctTGCTTTCcaatggttacatttttttctggtttgcTTTGTTGAACCAACACCTAATGTGGAGAACTAGGCACGTTTAACTCTGAAATGTTAAAGGTTAATGTTAAAAGTTAATGGTTTGATTTCTGAATTGGAAAATccaaacaaacctttttttagtcattgattaatttaaaataatgctttattgGGTtgtaaagcattacattacattacaaaaagagTGTTTGGACACAGTACGTTTTATTTGAGCAAATTTATATTGGTATGAAAAAGCTGTTCTCAGTGACCAATAGTGTTTAATTCTCAATGTGCCAATCAGATACTTAGTCACACTGccaaacaaaatatgcattttcacCCCAGATTCATAGACTTAATTTATCACTTCTTTTTCATGTTCTTTGCTTTGTGTAGGACTTGGGATTAGCGTTTTCCTGTTATGTGTCGCACTATAGCTAAAATATGGTAATTGTTAGAAAAACGTGGGGAAACCTAAATCTTACTCAACATTGAAATTGTACTTTTCATAATGTCAgttgttcaattaaattaaatagataaTTATGTTATAAATGAACAGCAGTCCCCTGtggaatattgtattttttgttttagtaaaaagttataagttaatatttttacacaaaaagGATGTTCCGGTTcaaatttattgtatttatttttttaaactttccttcacttttaaaatctgttttggaTTCACAGCTGGGGTGGTTGAAGGACTTTTTCAATTATGCACGTTTATGGTCGAATATAAGCCATCTATCTGCATGGTAATTATTTAGTGGGTCCAGGGGGATGACTACGTTTCTCATCGTTTGAAGCTACGTACAAATTTAGATTTTTGGAATTTTAATgccagcatttttaaataagcagCTTTTTGCTGTTGTCTGATGTAAATAGTGAATGAAAGTATGctacttttctgtttctttaatcCCTCTCATACTTCACCAACCAAAATGAGTATGAGCTTGCTTTAGAAAGGGAAGCAAAACATCAGGGCACTTTGAATGAGGAGATGCCGTTTAATGTAAATAGGATTTTTGCTAAAGCTGACTGTCCTTTACCCCCAGAGGTTTTCCccagctttgtgtttttaatccaGCAGCTTTGTAAGGGAGATGAATACATGTTCCTTCATATGAATTTACGAGGTACTTCTTTACAAAGCtctgcatttattgttttggttttttggggggtttatttgttttagactGTTTTAGACCTTGAGAGAGAACACACCCAACAGATATTTCATGGCAAAACAAACCACACTTCTGGATTAAAAAGggcaacaacaacagaataaaacagGACTCATTGGGGGAGATTTGTGTAGATTCAGTATTTGGTTTGGAGGTGTCTGAAGTTAACTTAACAAAGTGCATTGTAGAACAGAAATACAGCTCATTATCTTACAGCCTGTTTATCTGATATTTTAAAGGCTTGCACAATTGCCAAGATGTAATATGATCTTGGGGAATACCCTTTTAAGAAGAAGCtactattatatttttacatgaaaagaaaatgcatgccTGGATGGGTAGATTCTGAAATGTAGTGCTTTTAGCTTTAGATAATTAAATGGTAATCTTAACTGAATCATCAACATTTCGAAAACAAACTGAAGGCTTTTCATTGAAGGCGGACTGTCAGTAATTTCCAAAGGCCAAAGCTAATTTTTACCTGCAGTAGCTAATTGTCGCAAAATCCTTTATTCTACTGCTTAATCATACAATTCTTAATAGTTTTGCCCTATTTTCAGAATAAATTCCAATAgggagtatttaaaaaaaaaaaaaaaaaatgaaaaatggacAGCTGGCCCTATTTCGGTTTCTTTTCGTTTATCCCCATGAATGACTTGAGTCAATATATCGTACTCCAGTCATCTGGATGCATGCAGTCTGAACACAATTCAAACTGGTactccaaaataaaattaacatccaacttttttgtgtgatttgtatTCTGAATAGCACTGTTTATCAATGGAATGGGGGATTTGTACTGAACTGTGAAAGCTGAACTATTCTCTGGAGAAAACATAGCCACTACAGGAACAGAAAAAAGACCCATGCTCTTGGGTACACTGCAACACTATGTATTACATacttttattactttaattatattttatttaattctaactattacttaaaatatatatatacacacacccacacacaaatacatacacaaccAGAGTGGTGAGAATGTCTGTTGGTGGCTATAAAACCTGCAGCTGAAACTggtttgttttacagtgtgCATTAATGCAGTTTGACTGAGCCATTTCTTTTCTCCGCTGTGACTGCAGTGTCTGTATAAATGGCTGTAACTGCAGTTACTAGTGAACATTGCAAATACTCTGCAAATATTCACTTCATCACCTCAGTAAGTTTGCTGTGGTACCTTGACCAAAGAGACTGTAcctgtgtttttgcttttgttatgtATATTTGTTCTTTATGCAGCTTAAAAGTTGGATGTTACTTTTTGGGTGACATGACAGCAGTGTGTTGTCATACAGAAGATGGTTTATGACTatattgtctgttttttgtttttgtttttcatggttctgttgttttctactttaaatcactaatgttaattattttttaggaTTTTGTACAAAGGAACCTTTTAGCGTGTAATTTTCTTCCAGCTTTCCAGCCAGATTTGACTCTGTTAGATTACTTCAGTACTTCTCTAGCTGTTGATTTaaagatgtatatattgtgaACCTATCTGATGTCGTTCTTTTAAACAAAGGAAATTCTACATGTATTTCAAAAGTTGGTaacttcaaaaagaaaaagacactcTCCAAAACACAATTCTATGTTCAGAAAATTGCACATTTATCAAATATAGAAATCTACTTCACTTCAGGTTTTCTCCCAACTTCAGTGCTGCTGACTGATCTTTTCGATTGAGGTCATGTTTGTCTGCTGTGTCATAGCCTGTATGTTTAAAGCCATTGGATTGAATTTGCTGCGTTTTCCCGATTCTTATGCTAATGACTAACCACGGCAAGTGTTTGGCCTGGTTTTTGTGTTCGTTCATGATATTCTGCAAATGCCAGAATGGTTTTGGGGAACTTAATTTATAGACCCTTTGTTTACGTAATGTATGTAATAGGTCTTTGAATTACCTCTAGTGAGCCAGATGTATGTATCAGGCAGTGactacacatacatgcatatatactcTTAGGACAAATGTGTTTGAACTGTGGTGGCCAGAGAGGGCTAGGTGGCTTGGCAGTTAACATGCTGACCTGCTTGCCTTTATCTCCTTGTGTGAAACAGTTAGGTGATGTCAGTCCacgtaaaaaaaataataataaatgctgttCAATCTAAAATGGCAGTGTTTAGAAACTGATGGATCAATGAACCTGCTTTCCTAGCTGCAGGTAAGGAGTTTAGGAATTCTGGGAGAGTTCACCTTTCCTTTCTCTGGCCTTGTGGTTTTTCAcaacaaatcatttttttctaaaagggTCCAACTTAAATatcacacatatattttttttttcttatgttttaaggAACCAATTTATAAAGGAATATGAAAGTAATGAAATTAAGTACCAGCACACCCCTTATTCTCTGGGAGgaattttaattttctattttgttttgggtCACAGTAGTAATCCTGGTTAGCCTTTctgactgtgttgtgttttggtgACTGTACATCTGGGACCTGGAGTCCTGTCCTGGGCGTTTGCACAGCTACATTCCACTGTGTTCtctgtaatatacagtacatcgGCAACCTGCATGAGCTCCCACACTGAAGCTGCACCcagcatgaaaaaaaagaaagtcttacatgtagaaaatggaaaatagttctttaaaaaaa

Function

symbol description
adarb1b Predicted to enable double-stranded RNA adenosine deaminase activity; double-stranded RNA binding activity; and tRNA-specific adenosine deaminase activity. Predicted to be involved in RNA processing and adenosine to inosine editing. Predicted to be active in cytoplasm and nucleolus. Is expressed in blood island; blood vessel; central nervous system; and immature eye. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human ADARB1 (adenosine deaminase RNA specific B1).
adarb1 Enables double-stranded RNA adenosine deaminase activity; double-stranded RNA binding activity; and identical protein binding activity. Involved in several processes, including RNA metabolic process; negative regulation of protein kinase activity by regulation of protein phosphorylation; and positive regulation of viral genome replication. Located in cytosol; nucleolus; and nucleoplasm. Biomarker of amyotrophic lateral sclerosis.

NR:

description
PREDICTED: double-stranded RNA-specific editase 1-like isoform X1

GO: NA

KEGG:

id description
K13194 ADARB; double stranded RNA-specific editase B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001128 True 7002 mRNA 0.41 11 15754698 15800157

Neighbor

gene id symbol gene type direction distance location
AMCG00001125 NA coding upstream 109028 15630714 ~ 15645670 (+)
AMCG00001120 NA coding upstream 224739 15525846 ~ 15529959 (+)
AMCG00001123 NA coding upstream 230498 15518473 ~ 15524200 (+)
AMCG00001122 LOC107673730,LOC107555925,LOC107714219,LOC107741911 coding upstream 236265 15511511 ~ 15518433 (+)
AMCG00001121 plcd4a,LOC107739328,LOC107600964,LOC106575211,LOC103363317 coding upstream 255573 15487153 ~ 15499125 (+)
AMCG00001129 traf3ip1 coding downstream 131569 15931726 ~ 15951003 (+)
AMCG00001130 asb1 coding downstream 153558 15953715 ~ 15958009 (+)
AMCG00001135 NA coding downstream 189015 15989172 ~ 16002152 (+)
AMCG00001134 twist2,LOC106586121 coding downstream 207848 16008005 ~ 16008487 (+)
AMCG00001138 NA coding downstream 476278 16276435 ~ 16285796 (+)
G128827 NA non-coding upstream 341591 15412780 ~ 15413107 (+)
G128815 NA non-coding upstream 395684 15358643 ~ 15359014 (+)
G128772 NA non-coding upstream 428478 15325994 ~ 15326220 (+)
G128747 NA non-coding upstream 543373 15210353 ~ 15211325 (+)
G128697 NA non-coding upstream 680796 15071073 ~ 15073902 (+)
G128928 NA non-coding downstream 81198 15881355 ~ 15882299 (+)
G128938 NA non-coding downstream 121216 15921373 ~ 15921574 (+)
G128939 NA non-coding downstream 121517 15921674 ~ 15922039 (+)
G128941 NA non-coding downstream 122875 15923032 ~ 15924810 (+)
G128958 NA non-coding downstream 222101 16022258 ~ 16062179 (+)
AMCG00001114 NA other upstream 290845 15460532 ~ 15463853 (+)
G128823 NA other upstream 333818 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 570306 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 3369656 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 3743273 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 2222903 18023060 ~ 18044251 (+)
G129453 NA other downstream 2745736 18545893 ~ 18547915 (+)
G129442 NA other downstream 2754994 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 3088127 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 3243147 19043304 ~ 19142145 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_14296451_14314340 ADARB1A, ADARB1B, ADARB1 coding CI01000009 null 14296451 ~ 14314349 (+)