AMCG00014415 (eed)


Basic Information

Item Value
gene id AMCG00014415
gene name eed
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13323367 ~ 13331090 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014415
CAATATGCTCAATATATCGCAGTTACAGATTTAAAGTTGTTAAAGAATAGTAGTAGGTTAAAGGTTTGTATTGTTTGATAGCTATAAAAATGACTTGGACATAATTTCTACATTACCGCTGGAATAGTTCTTGATACTTTACAATTGCAATTAATCCGAAAGAAGGGGATTATTGCGACAATGCGGCAGGTTTACGGGAGAGTGGCAACAGGCGTTGAGGACTGGTCGTCAAAACGGTTTACGGCAGTGTGGCCATACGCCGGCAAactggaggaagaggaagatgaGGGAAGATGTCTGCGAGCCAAGCCGAGGCGGGAAACGACATGCCTGCGAAAAAGCAGAAACTGAGCAGCGATGAAAATAGCAATCCCGACCTTTCAGGGGATGAAAATGATGATGCTGTCAGTATAGAAAGTGGGACCAACACTGAGCGCCCTGACACCCCCACCAATACCCCCAATGCCCCTGGCAGGAAGAGCTGGGGCAAGGGCAAGTGGAAATCCAAGAAGTGTAAATATTCCTTTAAGTGCGTCAACAGTCTCAAAgTAACATTATATGAGTGTCATTCACAAGGAGAAATCCGTCTACTGCAGTCTTATGTAGATGCTGATGTATCCTTCCTATACTCCTTACAGAGCACTGGTTGTCTCCTGCTGCTCGCAGCATACATGGCGGATGAGAACTTCTACACCTGCGCGTGGACCTTCGACAGCAGCACCAGCCACCCCCTCCTGGCTGTGGCGGGGTCACGAGGCATCATTCGTGTCATCAATCACATCACTATGCAGTGCATCAAGCACTATGTGGGACATGGGAATGCAATCAATGAACTGAAGTTTCACCCTCGGGACCCGAACCTCCTGCTGTCCGTCAGTAAAGATCATGCCCTCCGGCTCTGGAACATCCAGACTGACACGCTGGTGGCTATATTTGGGGGAGTTGAGGGGCATCGTGATGAAGTCCTCAGTGCTgACTTCGATCTACTGGGTGAGAAGATCATGTCTTGTGGTATGGACCACTCCCTAAAGCTATGGAGGATAAACTCTGAGAGGATGCAGAAAGCTATTCGGGGGTCTTACGAGTACAACCCCAGTAAAACCAACAGGCCATTCGTCTCCCAGAAGATCCATTTCCCTGATTTCTCCACGCGAGACATTCACAGGAATTATGTTGACTGTGTGCGGTGGCTGGGAGATTTAATTTTGTCCAAGTCGTGTGAAAATGCCATTGTATGCTGGAAACCAGGGAAGATGGAAGACGACATTGACAGGATCAAACCAAATGAATCCAATGTGACCATCCTGGGACGCTTTGACTACAGCCAGTGTGACATCTGGTACATGCGATTCTCCATGGACTTTTGGCAGAAGATGCTGGCTCTGGGTAATCAGATCGGGAAGCTTTATGTATGGGACCTGGAAGTGGAGGACCCCCATAAAGCAAaATGCACCACCCTGACCCACCCTAAGTGCAACTCTGCCATCCGCCAGACCAGCTTTAGCCGTGACAGCAGTATCCTGATTGCCGTGTGCGACGACGCCTCTATCTGGCGCTGGGATCGGCAGCGCTGAGCGCCTGCACGGTTTCCTGGGCATCTGAGATGGCAGACCCCCTGAGCTTCAATGGCCTCGCCTTGTGGAAGTGTCAGGGTCCGAAGCCCACAGCCGGAGAGCTCTGCTGTCTTTTATATCCCTGTTGTccttttatttgctttttgtttttgatcctTGTTGCTTATaataaatttatttttctaaagtctgttttttattcatctaaaataaatatagcataTATCTatccatatgtatgtatatctatatatataattggggTTGGGGCAAAAAACTGCAAAGGGAATACTCATTTTAACCCTATTTATCGAAAtcaaaaaatgtttacatttttcaggggtttgttttggtggtgtttgctttgaaatgagGAGGAACTCATTGAAAttatcaaagaaaatataacctTTATATGGAAGATTGTACCTGAACATGTGGTCTAGCATAACCTCATACTCCATACAAAAAGTTTTTTGAATAAACATGGACATTTATACATCAACAAATAGCTAATTTGAAGTCGGTTGTTTTAACTATATAAATTGTTTTAGTCAGTGT

Function

symbol description
eed Predicted to contribute to histone methyltransferase activity (H3-K27 specific) and nucleosome binding activity. Predicted to be involved in chromatin silencing and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone methylation. Predicted to be located in nucleus. Predicted to be part of ESC/E(Z) complex. Is expressed in several structures, including eye; gonad; heart; intestine; and midbrain hindbrain boundary. Orthologous to human EED (embryonic ectoderm development).

NR:

description
polycomb protein EED

GO: NA

KEGG:

id description
K11462 EED; polycomb protein EED

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014415 True 2135 mRNA 0.45 11 13323367 13331090

Neighbor

gene id symbol gene type direction distance location
AMCG00014416 NA coding upstream 21494 13291329 ~ 13301873 (+)
AMCG00014417 NA coding upstream 39073 13276573 ~ 13284294 (+)
AMCG00014414 NA coding upstream 49064 13266017 ~ 13274303 (+)
AMCG00014405 NA coding upstream 77733 13240840 ~ 13245634 (+)
AMCG00014406 NA coding upstream 83257 13239073 ~ 13240110 (+)
AMCG00014419 NA coding downstream 9097 13340187 ~ 13360020 (+)
AMCG00014418 NA coding downstream 30658 13361748 ~ 13371376 (+)
AMCG00014420 NA coding downstream 119008 13450098 ~ 13451219 (+)
AMCG00014422 NA coding downstream 259830 13590920 ~ 13615018 (+)
AMCG00014421 NA coding downstream 299577 13630667 ~ 13650074 (+)
G69833 NA non-coding upstream 340933 12980259 ~ 12982434 (+)
G69778 NA non-coding upstream 723054 12600104 ~ 12600313 (+)
G69739 NA non-coding upstream 1539284 11783865 ~ 11784083 (+)
G69722 NA non-coding upstream 1600600 11719318 ~ 11722767 (+)
G69681 NA non-coding upstream 1681915 11641083 ~ 11641452 (+)
G69959 NA non-coding downstream 3124 13334214 ~ 13335185 (+)
G69961 NA non-coding downstream 21243 13352333 ~ 13380404 (+)
G70054 NA non-coding downstream 363725 13694815 ~ 13696871 (+)
G70221 NA non-coding downstream 836356 14167446 ~ 14171012 (+)
G70271 NA non-coding downstream 1135614 14466704 ~ 14467744 (+)
AMCG00014407 LOC107725344 other upstream 71635 13246309 ~ 13251732 (+)
AMCG00014345 NA other upstream 3171454 10147979 ~ 10151913 (+)
G69406 tgfbrap1,LOC102780916 other upstream 3314719 10003058 ~ 10008648 (+)
AMCG00014272 tbc1d23 other upstream 5840807 7464503 ~ 7482560 (+)
G68848 NA other upstream 5906773 7413640 ~ 7416594 (+)
AMCG00014423 pou2f1b,LOC107748141 other downstream 324148 13655238 ~ 13689188 (+)
AMCG00014456 NA other downstream 858474 14189564 ~ 14205014 (+)
AMCG00014461 NA other downstream 971357 14302447 ~ 14356868 (+)
AMCG00014470 NA other downstream 1890824 15221914 ~ 15242333 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other downstream 2344541 15675631 ~ 15685899 (+)

Expression


Co-expression Network