AMCG00014697 (atg3,LOC107752093,LOC107659953)


Basic Information

Item Value
gene id AMCG00014697
gene name atg3,LOC107752093,LOC107659953
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27470289 ~ 27482680 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014697
GCACACCACCCCTGCCCTCCACTCAGCACAGCGTTACACGTCATCATCTCCAGCAACGCGAGGCTTTACGAGACGTGCGCTGCGGAAGTGGCAGTCAGGTGACCCGGGTCATGTGGTCCGCTGGTGGTGCGCGCAGTAAACACTCAGCTCTGGCCGAAAGTGACATCTTCCCCTCCGAAAACCGAGCTGCACTCCGGGTGTGTGAGAGGGTGTCTGGGTGGTCGGGGACATCGCGAGTGGGACAGCAGGCATGCAAAACGTCATCAACTCCGTGAAGGGCACCGCGCTGGGAGTGGCCGAGTTCCTCACCCCAGTGCTCAAGGAATCCAAATTTAAAGAAACCGGTGTCATCACACCTGAAGAGTTTGTAGCAGCCGGGGATCACCTCGTCCATCACTGCCCTACATGGAAATGGGCTTCTGGGGAAGAAGCGAAGGTGAAGCCATATTTGCCGAAGGATAGGCAGTTTTTATTAACACGCAATGTCCCGTGCTACAAGCGATGTAAACAGATGGAGTACTCAGATGAGCTGGAGGCCATCATAGAGGAGGACGATGGGGACGGAGGCTGGGTGGACACCTTTCACAACTCAGGAGTATCTGGTGTCACGGAAGCGGTCCGAGAAATCACATTGGACAATAAGGCTGGTTATCTTTTTAGCTCGAATTTGAAGTTGCCATTTTTAATAATCCAGAATATTTCGTATTTCAGGCTCATTGAAAAAATGAATCTGAATGCCCACTCAGTGGCTtgtggtgatgatgatgatgaagatgatgaaggAGAACCAGCTGACATGGAAGAATATGAAGAGAGTGGGCTTCTGGAAACGGATGAggcatgttgtgttttttccctgaCAAGTCTGTTGACAGGCAGATCGTCTTTACATATCATCACTATGTCTAAATCCTTCTCTGACAAGGCTCTTGGGTTTGTCTGGCAGAGTCTCAATTCTCTAGTCTTGATTCCCTTTAATATTATTGTAGAACACAAAAGTGCTAAATTAGGTGACCTGCAATCGATTTCTCTACAGGCAACTTTGGACACCAGTAGAGTAGTGGAAATTAACAAAGCCAAAGATGCAGGAGGGGAAGATGCCATTCTACAGACTCGAACCTACGACCTCTACATCACTTATGACAAGTACTACCAGACTCCCCGGCTCTGGCTGTTTGGATATGATGAGGATCGGCAGCCGCTCACTGTGGAGCAGATGTACGAGGACATCAGCCAGGACCACGTCAAGAAAACTGTGACTATTGAGAACCACCCCAACCTGCCCCCTCCAGCCATacaTGCTGAAGTGATGAAAAAAATCATTGAGACCGTAGCCGAAGGTGGTGGAGAACTTGGAGTTCATATGTATCTATTAATTTTCTTGAAATTTGTGCAAGCCGTCATTCCTACAATAGAATATGACTACACAAGGCACTTCACCATGTAAACGGAGCTGCGCCCGTACATTCACCGGATAAACATTTGGTTTCAGTGCTCGAAATGGTTTGGGAATTTCATGGTTGAAATGCAAGCACCGCTCCCAACACTGCCAGTAGCATATGGATTTAAACCCCTCTCCTCCACAATGACTTTAGGAATGTCTCTGTTTATTAAGATTCTGCCAGACACACTGCATGACGGCTCTATAGTTTTCAGATGCAATCCTGTGGTTCTTCATAATAACCCCTGTCTGGGTAACCctcctctatttttttttttctgctttcagaAAGAAACCAAGTCTTTTTGCTGACTTATGTCTCGGTGCTTtagaagaaaatgaatctcttaTAGACAACAATAATACCCCGTTTGCATACACttcttaataaaaagacaacttgagtatcttttttttgttggacTAATGGGAACCCTAGCCTGGTTTCAGCTACAGAATAAAACTACCTATAATTATGCCATAaaatcttttcttctttttaaattatatgcCTTATAAATGTGGTCCaatgtattgaaattattcaaatgttttggcTTTTATCAGTTGTTTGCTACATAGGGGAGGCTCGGAGTAGACCTATAGATGACCCCATTCCACCCTAATGTCAAAGCTCTTGCTGTGTTGCATAGCCTAGGGAGACATTCAGTTAAACTTAGCCTGGCACAGTATACTTATTTTAACATGCGTAAGCCGTGGCTGTATGCTGGCATGGAGTGGCATGTGCTCGGGTAGGACTGAACTGGTTAATTGGAGTTCTGTATCAGTTACTATCTCCCTTGACAGTTTATGGCTGTCATTTCTCCTCTTCAAAAACAGAGGGGTGGCTGTTGACCACACTTCCAGGGACAGTGGCGCCTCTGTCCTTGGGGCAGAgctgtcttttctgttttcatctGTGTGTTGTCTTGCCCCTCTCTGTGTGAGCCGATGAGAAATGCAAGACCCTCGTATCTGAGCATCCCACCTACCTTTCACAAGGTGTTGGCAGCCAAACAGCCTCCAGTTAAACTTACTGCCACAGCTTGTGCATTCAGGCATGTGGGGGGCAAGAAGCAGTGTTGTTTCAGACACCGGCTTATTGTCCTGCatcagtatatatgtatttatgtgggGTCTTTGAGAATTTTTCTTTGGGATGATTCGGGGGAAACTACAGATTGCTTTAAGGTCTACTGACTGtttcttataaaaataaaaggcattaCATATCATTTCCCATCTTTCAGATTATCACTTGTTCAGTTAATCACATTCAGCAGCTTTTTTTATCGAGGATTCAGAAATGGGTAATGTTTGTGGTGCACGAGTCAGGACGTCTAACCTAGACACATCAATCGAGCATGCAACGTCACTTCCGCTATTGCAAGCACAGCGAGAATCCTCCAGCGTGAAGTAATCGCTTCACGTACTTTGCCCAGTTTGCCCAATTCATTCGGAATCATTCAGCCTTTGTCTccagaatgtgaaaaaataaattgacaagACCGGATCTGAAGAGAAACTAGAAACTATTTGTGATGGGGTTTGGCATTTTGGAGGTAGAGCGGTGTCTAATTAAAAGACCTCTGACATTAAAAGCAGTATGTATTGGGGTTAATGACACCGTAGACAACTACAAAGGCTAAAAAACTGATCATGGTGATGTATTCAGACCTGGACGATTttagtaactttttttttttttttttttagaacattAGGACTGGAAGGATGTCTCTGTATCTATTACTAAATCTGCCCATGCAGCGTAATTCAAGTCTCTGTTCAGTTCTCTCAAAGGTACTGAAAAAAGTTCTCACTTTGGGAGAGGACGAGAAAAGCTCAtctaaagtaataaataaaggatTTCTTAACAATTCTAACTAGaccttgttatttttattgatttaaaggaGTATTTCACCAAAACCAGCACAAAGAattgtatgaaatgtatttttctgtaaacatttttaCTGTTATCATCTGTTCTACTGTGATTACACTGCTACCAGCTAAACTCTGTCCAATGCCAGGAAATGGAAGACGGAAACTTACATAATGTCTTGCatctttcttccttttcctttccttaaGTTGTGTGATTTCTGTGTTAACACACCATGGTGGTGGGGGTTGTGTTGTACACCTTAAGTTGTAAAGAAATGGTTAGGttatacttttgtttaaaaCTTTGGCTTTGTTCAAGCAGGCTGCTCGATGTGAAACTTAAGGCTTTTGCACACTGAATCCAATGATGCATCCAATTTTTATGTGCatgaagagaaaatgaaaacaagtgtgCTTTCAAATCGATCCACTTCacgtacattacaaattaacTTGTAGTTGTGtaggtaaagaaacagtggcGTAGCTTGCGAGACCAGCGCAAGAAAGGGAAAggcttttgtatttgtgtggtTTTAACTGATCCAATGTGCAATGTCCTTGATTAGTTACAATTTATGTATCAGATCCAGTGTGTAATGGCCTTTAGAACATTCACATTGCGTAATTTGTATTCCTCAAATCTTGCagcaagatttttttaatttaaatcacaaactaGTACTTTGACCAGAGTGTAAAGTGGTAATCCCTCTTGCTTCATTGTGTTACTCAAGTCAAATGTTTCGGGAGGGTAAACATCTCGCACTTTCTCTGGGGTTCATTGTGTAAGGCACCCGTTGCAATGAAAGATAATATGAAAGCAATGGATTGGGGAAATAAGTTCATCCTGATTGGCTGAAGGCAACCCACTGACATATGTAAGTGTATAACccacaggtaaaaaaaaaaaaaatgctggtttTGGTTGTACTACAATAAGTTCAGACTATGCCTTCATACCCCACTCACTAACCATCACCCTGTCACATACTGAGAGAAAGCAATCCAATATGATCTAATTTACATTTTCCCACAAATACTCCTGGAAGTGAGTTTCTCTTCCTTTGTTCTTTATTGAGCTCTGGGATTGTGATATTGCTTTTGATAATGTCATGGGTGCATTGCACAATTTTGATCTTAATGCCAGGAAAGTTTACCTGACACTATGCAAATAAAAGCAgcatgtttgtctgtt

Function

symbol description
atg3 Predicted to enable Atg12 transferase activity and Atg8 ligase activity. Predicted to be involved in autophagosome assembly; autophagy of nucleus; and mitochondrion organization. Predicted to act upstream of or within autophagy and protein transport. Predicted to be located in cytoplasm. Predicted to be part of cytoplasmic ubiquitin ligase complex. Predicted to be active in cytosol. Is expressed in brain; liver; muscle; and yolk syncytial layer. Orthologous to human ATG3 (autophagy related 3).

NR:

description
ubiquitin-like-conjugating enzyme ATG3

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0043653 mitochondrial fragmentation involved in apoptotic process biological_process
GO:0015031 protein transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0019776 Atg8 ligase activity molecular_function
GO:0019777 Atg12 transferase activity molecular_function

KEGG:

id description
K08343 ATG3; ubiquitin-like-conjugating enzyme ATG3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014697 True 4532 mRNA 0.42 12 27470289 27482680

Neighbor

gene id symbol gene type direction distance location
AMCG00014696 NA coding downstream 3435 27441353 ~ 27466854 (-)
AMCG00014694 NA coding downstream 29360 27431251 ~ 27440929 (-)
AMCG00014695 myh9,LOC103376082,LOC106601336,LOC100380669 coding downstream 48620 27420051 ~ 27421669 (-)
AMCG00014698 NA coding downstream 65370 27397227 ~ 27404919 (-)
AMCG00014699 NA coding downstream 83662 27381186 ~ 27386627 (-)
AMCG00014702 ccdc80,LOC107695464,LOC107756780,LOC107673676,LOC107748150 coding upstream 9348 27492028 ~ 27509142 (-)
AMCG00014707 kdm6a coding upstream 235286 27717966 ~ 27762413 (-)
AMCG00014712 NA coding upstream 578948 28061628 ~ 28204961 (-)
AMCG00014713 NA coding upstream 736712 28219392 ~ 28220486 (-)
AMCG00014715 ddx3x,LOC108412429,LOC102776245,LOC107564811 coding upstream 806675 28289355 ~ 28315398 (-)
G72049 NA non-coding downstream 51244 27418816 ~ 27419045 (-)
G71961 NA non-coding downstream 537652 26932268 ~ 26932637 (-)
G71882 NA non-coding downstream 1135289 26334655 ~ 26335000 (-)
G71880 NA non-coding downstream 1146035 26324038 ~ 26324254 (-)
G71879 NA non-coding downstream 1188324 26281374 ~ 26281965 (-)
G72089 NA non-coding upstream 47616 27530296 ~ 27530643 (-)
G72139 NA non-coding upstream 353659 27836339 ~ 27837927 (-)
G72146 NA non-coding upstream 374059 27856739 ~ 27861375 (-)
G72280 NA non-coding upstream 1095729 28578409 ~ 28578734 (-)
G72305 LOC100136012 non-coding upstream 1163815 28646495 ~ 28646811 (-)
AMCG00014692 LOC107756725 other downstream 100762 27335695 ~ 27369527 (-)
AMCG00014693 NA other downstream 165692 27285420 ~ 27304597 (-)
AMCG00014630 LOC107672672 other downstream 5225374 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 8245059 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 8266722 19201803 ~ 19203567 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 847059 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 1906610 29389290 ~ 29398305 (-)
AMCG00014775 NA other upstream 3358843 30841523 ~ 30846800 (-)
G73047 NA other upstream 4780487 32263167 ~ 32263427 (-)
AMCG00014816 NA other upstream 4972626 32455306 ~ 32555945 (-)

Expression


Co-expression Network