AMCG00021305


Basic Information

Item Value
gene id AMCG00021305
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 14110458 ~ 14117266 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021305
GGCAAGGTAGCCATGCTGGTGGCGGAGCTGGTTTTAAATGGCTACCCCCATGGCCGACAGAGAAGGTTCTCGTCAATGGGATAAAAGGCAGCGCTCCATACACGTAGATAATTTCAGACAGTTTTCCGAAAGCGATAAACACTGGGCAATCCGAAAACGGTTTCTCTTAAAGTATGTGGACGAGTATAAGGATAGAGACATCAGTGACCAGCTGCTGTCGCTGTCGATGGTATGGGTGAACCACGTCTTCATGGGATGCAGGTATGGCCCCGAACTGATGCAGAAGGTTCTGAAGATGGCAGAAGGGATTGACATTGGGGAGATGCCCTCCTTTGAGCTGGTTCCTGGTGCTGAATCAAAAAAGAGACCAAGTTCATCAGATGACAAGGAAGAGCCGGTGAAAAAGCTACCCATGGCGAAGTTTGTGCCCAGACCTCGCTTCGAGCCCGTGCACTTTGTCAGCAGCAGTGGCACGGAGGAGAAGGAGAACGAGAAGGAGCGCAGGAGGGGCGAGATGAACAGTCTGGGTCAGAGGGATTCCAGCTCCACGTCGTTTCACAGCAGCAGATCCCACGCCTCCGCTGCTGCCTCCGCCGCTTCCTCCTTCCGCAACACCACACCCTATGTTTTCGACTCCTGGGCTGAGGAGGAGAACAGGGAGGTGCCCCCGAGTACCAGCGGTCTTGGCTTTGGGAACCGCAGCAGCTCCTCGAACTACATGTCCAAAATGCAGCAGGATTACTCTGCCAAGTTTGAGGCGCACTATTCCAAACGCTCTGAGACTTCCCAGGCTTACAGGTTTGATTCTGAGGGGACTACCAGTCGGGATGTGCGTAGGGGTTTGGGTTTCGGGAACCAGGACAGACATTCATCCAGTGGGGGGTACAGTAGAGGGCACACTCCGTCTATGGACAACAGCCATCCGAGCCAAATCGCTGCCAGTCAGCCAGCGCCTATATCGGCAGCCACACTGGAGGAAAAGCAGAGGCTAATTTCTAGGGTGTCCCACGCGATGGCCATCACTTACAGAGATCCCACATCCATGAGTGGCCCGGACACGCCTAACTACAACTTCATTCTCAGTCGTAGCATCCAGGCTTGTAAGACGAACCCAGAATACATCTACGTCAACCTTAAGGAGATCCCTCCAGGTGACCTGCCAAAGAACAGGAAGGTGCCTTCTGATGGCTATGCCTGTGAGCTGAGGTGCCAGTGCATTTATTTGGCAACCGGATACTCGGGCAGCAAAAATGGAGCCAGGGATCGGGCATCAGAGCAGGCTGTCAAGCTGTTTCTGAAACCTGTGGAGGTGAGGGTCATAAGGCGCAAGTACAGGCATGCTTATGTGAATGACCTGGTTGTTTGCCAGTCGCAGTTTCCCACTCCTTGCTTTGCACCGGCACTGCGGAACCCAGAGGACAAACCACCACCAAGTTCAAAGGGCCAGTATGAGCCGGACAGCAGGAAGCACTGGACTGAGTTTGTGATTGTGGAAAATGCCCACGATGCGATATGCATCCTCAACAACTCGGCTGCATTCAACCGCATGAAGATCGATTACAAATTTGATATGATCCCCAATACAAGCACCTGGCAGTGCAGTGTCTACCTCCAGGATGAGCTGGTGGCGCAGGCCAACGGGAACAAGAAGACCTCAAAGCACGCGGCTGCAGAGGAAGCCCTGCGGAAGCTGAGGATGAACCAAGAGtccaagcagcagcagcagcagcagcagcagcagcagcagtactCCCGAGGGAACCACCACTCGGACTCTGGTGGCCGCTTCGGACAGCATGGCAGGAAAAAGCACCTGAGTGAGTTGGTGATTCTGGAGAACTCAGACAACGCTATCTGCATCATCAATGACACCGCTCAGTTCAACAAGGTGAGCGCCGACTACAAGTTCATGGTGCTGCCGGACCACCGGTGGAAGTGTGAAGTCTATCTGGAGGGACAGTTTGTGGCTGCGGGGATTGGGCCCAAGAAGACTGTAAAGCACATCGCAGCGGAGGAGGCCCTGGCCAAGCTGCGGCAGACGCAGGCCGTGGTCAAGTCCAACCTGAGGAAAGACGGCAATGAGGACGCCATCTCACGCAACCAGATCCTGGGCCGTTCGGCTGAGGAAGCGTTCAGGCAGGAGATCAAGGAAGACAACATTGGGAACCAGCTGCTGCGCAAGATGGGATGGAAAGGAGGCGGTTTGGGCCGGGAGGGTGAAGGCATCGCAGAGCCCATCAAAGTGAAGGAACAGTTCACCCGGGAAGGGCTGGGGCTGGACATGGAGAGGAGCGGGAATCAACTCAACAAGAGAGACATTGAGGAAATCATCCGCAACTACGCCAGCTCCGACCGGCAGGATGATCTGCGCTTCTCTACCGAGCTGAACAACGATGAGAGGAAGCAGATCCACCAGATGGCACAGAAATACGGCCTGCGCAGCAAATCCTACGGGCAGGGCATGCAGCGGTTCCTCATTGTCAGCCGGAAAGTTCAAAAGGAGCAGCTGATTGGTCAGCTTCTACAGGAAGGGCAGGTCGGCCGATATGAATTGGTGAAACCTCAGGCTTCGCATTGACTCAACTATTATGTACATGGACCTGTAGGGGAACATTACATCCTTTTAAGTGGAAGGGCACTTCACATTCAGGCAGGGAGAAAAAGGAGAACTTCATTCTTGCTGAAatctatttcagtttaaattaaaacaaacaagattttCTCTTGGAGCATTTTTCAATTCGGCGTCTCTAATCTGCGGAAGAGTGAAAAGCTGAGATACCGGTCTATTatccttcaaaacaacaatatatgtgtatatttctatttttgtggGCTATTGCTCTTTTAGTTTAAATGgaagaaataaagcaaattcaAACACCccaataaaatttaaataagcGTAACTTTCATTCATCATATGCGTTTGTCTGAAACCTgctgtagcttttttttttttttactgaacttGAGTTGCATCATGTACTGTAATGTCAACACTTTACGTTGTGCGTCACAAAAGAGCTCCAGAACTTTACCAACATCTTTACGAACTTCTGTGCTCCAATTTTAAAGTTGTGAATTCAAAACTGGATCATTAGTAAACTGTAGATTGAACTGAAATGAGGAGTAAAACATTTCCCAGCAACTGTACCACTTGAACTCTGTAACACTAGAAATGCCATTATAATACTTCTGCTACACCTGTTCAATGTGACTCTTAACAGAATGTCTTGCTAATATGCATCCTAACTTcctaaaaatgtaaagttacatttctgatgtgAACACAACAGCTGGACCCTGGTTTGAAATGAAGATGGGGAGCAGTGAGCCACTGATTggtgacatatatatatgttaaccCTTTAAACTCTGAAAGCAAAGCCTCATTTATCAAGAAATTAAATCCTGTCAATAATCCACGATTTACAAATCTTATAATGAAAGAAGTAATATACTCAAGAATTAAACTAGGGAGGATCTGGTCTGCAGATTGCTGCTTCTTGTCTTATGACTTGTCAGATTCTTGAAATAACatgttgaaaggaaatgttgCTAATGGAGCAGCTTCAAacttcttttgtctttttaggAGATTTTATCTTTCAAAAGCAATCCAAGTTATAAAATCTGCAGGTTCTCTTtactctgcatttttttttatgtttacaagGTTCTAGCTTCTGAGGGTGATGAGCTACCATAATGGGACTATGCTCAATAAATCACCTCATCAATCAAACAAGTCCTGTTCGTTTACATTGTTCCTACACTGAGGTAGTGGAACGTCTGTGCATGGATGCCGTCTAAAAAACAATGGTGTTTTTGGAGCTTGAGTATAAAGGGTTAACAGATTTCTATTTTTGTGAGACCCTGGGGCTATAAGCTGATATTGTTATAGATTtaagaaaaaggacaaaataaattaaaggtgTAGTTCCTACATTTTATGTATAGTATTTTTCT

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021305 True 3972 mRNA 0.48 3 14110458 14117266

Neighbor

gene id symbol gene type direction distance location
AMCG00021306 sept6,LOC106611514,LOC107664349 coding upstream 4518 14080550 ~ 14105940 (+)
AMCG00021295 upf3b,LOC102779784 coding upstream 42066 14063972 ~ 14068392 (+)
AMCG00021293 NA coding upstream 54477 14053219 ~ 14055981 (+)
AMCG00021294 nkap,LOC106611517 coding upstream 62657 14041440 ~ 14047801 (+)
AMCG00021297 NA coding upstream 113850 13987124 ~ 13996608 (+)
AMCG00021312 NA coding downstream 61912 14179178 ~ 14197672 (+)
AMCG00021317 NA coding downstream 204619 14321885 ~ 14339956 (+)
AMCG00021322 pdzd11 coding downstream 372867 14490133 ~ 14493431 (+)
AMCG00021323 NA coding downstream 415516 14532782 ~ 14552790 (+)
AMCG00021324 NA coding downstream 440863 14558129 ~ 14561490 (+)
G85090 NA non-coding upstream 74796 14034215 ~ 14035662 (+)
G85069 NA non-coding upstream 108039 14000596 ~ 14002419 (+)
G85056 NA non-coding upstream 146234 13963109 ~ 13964224 (+)
G85013 LOC100846954 non-coding upstream 192587 13869562 ~ 13917871 (+)
G85185 dlg3 non-coding downstream 255454 14372720 ~ 14373557 (+)
G85202 NA non-coding downstream 339362 14456628 ~ 14495849 (+)
G85344 NA non-coding downstream 1009501 15126767 ~ 15127233 (+)
G85345 NA non-coding downstream 1010023 15127289 ~ 15127965 (+)
G85380 NA non-coding downstream 1139182 15256448 ~ 15260965 (+)
AMCG00021292 NA other upstream 37333 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 76901 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 673050 13435307 ~ 13437408 (+)
G84749 NA other upstream 2009751 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 3123284 10963148 ~ 10987174 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 1311211 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 1946233 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 2472915 16590181 ~ 16592973 (+)
G85787 NA other downstream 2539378 16656644 ~ 16714038 (+)
G85869 NA other downstream 2880611 16997877 ~ 17004131 (+)

Expression


Co-expression Network