G85380


Basic Information

Item Value
gene id G85380
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15256448 ~ 15260965 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU106556
aaaatacacaNNNNNNNNNNNNNNNCCCTACACACTGCATTGTGTGCCTCCAGCTCACCTGATTTGTTCATAAGGCTCAACAAAGCTTCAGTTTCCTTGTCCTTCTGGTTACAGTGGTAATCaggtttgcaaaaaaaaagtttttaaacaGGTTCTTCTTGTATGCAGGGAAATGCCTTAAGGCTTGTCAGCAGActcaaccttttttttcttcaaaatagtTCCGGAGCACTTTTCTAAATCCTGTCAAATTGTGCCTTACCCAGCAGGCCAGTGGATTGTGGACAGAGAGGAGCACTGCTGGTTCCTGCGGTAAATGTTTGTTGTGTTCAGTTTGGCGCTCTGAGTGCTGCAGAAGCCGTCTTCCATTAAGGAGAAAGCCCCGCTCGTACAATGCCCAGTTCAAgtcactgaaaaagaaaacagcactcCCATAGGCAGCTCTGCTGAAGCGTGAGCGGCGCAAAGCTGTTCCCACAGAGTCTTAATACCAGTACAGGTCCTTCTTCTTTTCTGGAGCGGGTATtc

Function

GO:

id name namespace
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU106556 True 528 lncRNA 0.45 2 15256448 15260965

Neighbor

gene id symbol gene type direction distance location
AMCG00021340 NA coding upstream 66357 15157183 ~ 15190091 (+)
AMCG00021337 rbmx coding upstream 101544 15150163 ~ 15154904 (+)
AMCG00021339 NA coding upstream 133485 15121710 ~ 15122963 (+)
AMCG00021335 NA coding upstream 214370 15038966 ~ 15042078 (+)
AMCG00021333 fgf13,LOC107744562,LOC102775774 coding upstream 373360 14880963 ~ 14883088 (+)
AMCG00021348 NA coding downstream 64494 15325459 ~ 15335662 (+)
AMCG00021346 NA coding downstream 92791 15353756 ~ 15380123 (+)
AMCG00021350 mospd1,LOC107601124,LOC107560686,LOC107744569 coding downstream 207538 15468503 ~ 15474502 (+)
AMCG00021354 LOC105026395,LOC107751966,LOC105912120,LOC107601099,LOC103357578,LOC100696750 coding downstream 286316 15547281 ~ 15553002 (+)
AMCG00021359 NA coding downstream 310585 15571550 ~ 15599716 (+)
G85345 NA non-coding upstream 128483 15127289 ~ 15127965 (+)
G85344 NA non-coding upstream 129215 15126767 ~ 15127233 (+)
G85202 NA non-coding upstream 760599 14456628 ~ 14495849 (+)
G85185 dlg3 non-coding upstream 882891 14372720 ~ 14373557 (+)
G85098 slc25a5,LOC107378486,LOC104931197,LOC107748177,LOC105925769 non-coding upstream 1103905 14109527 ~ 14152543 (+)
G85412 NA non-coding downstream 144811 15405776 ~ 15410610 (+)
G85426 ddx26b,ints6l,LOC107658008 non-coding downstream 185346 15446311 ~ 15566826 (+)
G85440 NA non-coding downstream 226277 15487242 ~ 15529672 (+)
G85455 NA non-coding downstream 300780 15561745 ~ 15562917 (+)
G85497 NA non-coding downstream 314584 15575549 ~ 15576518 (+)
AMCG00021292 NA other upstream 1183323 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 1222891 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 1819040 13435307 ~ 13437408 (+)
G84749 NA other upstream 3155741 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 4269274 10963148 ~ 10987174 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 167512 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 802534 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 1329216 16590181 ~ 16592973 (+)
G85787 NA other downstream 1395679 16656644 ~ 16714038 (+)
G85869 NA other downstream 1736912 16997877 ~ 17004131 (+)

Expression


Co-expression Network