AMCG00021346


Basic Information

Item Value
gene id AMCG00021346
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15353756 ~ 15380123 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021346
ATGCTGGAGGTGGACTACGGGCAGAAGTGCCAGGCGGTGGCCCAGACTCCTCTCCTCAGCATCCCTTCTTCGAGTCTGAGCCCAGACTCCACAGCGCGCAGCAACCGTTGCTATGCAGCTGTTTGGAAAGGAGTGGATGAACTTTGGAAGATGCAGCAAGTGGCCGTGGCCCAGGCCCAAGCAGAGGAGCGGCGCAGTCAAGCGGGCAGCAGTCCCGTGCCAGTAGTTCCTTCAACGGGCAGTGCCAAGACAGGCAACAAGCCAGCTGCTAAGGAATCGCAGATTCTAGAGCGCGAGCGGAAGGCAAAGCTGCAGTACGAGCGGCAGATGGAGGAGCGGCAGAAGAAGCTAGAGGAGCAGCGCAGGAAGGAGGAGCAGCGCCGGGCAGCCGTGgaggagaaaaggaaacagAAGCATGAGGAGGAGAAGGAGCATTACGAGGCAGTGATGCGGAGGACACTGGAGCGAAGCCAGAGGCTGGAGCAGAGGCAAAAGCGATGGTCCTGGGGCGGAGGTCTGACTGTGGACCCGGAGAGCAAGACTGACAAGCGCTCTACGTCCACAATGAACCTGAAACAACCCGATTCTGTCATCAGCAAACGCCTTTCCACATCCTCTGCTACACTCATGAATTCACCTGACAAAAGTGCTAAAAGGAGGAGCTCCTCTCTTAACCGGTTGCCTGTCAAGGCCTCCCAGCCTGCTAAGGAAGCCCAAAAACCCACTCGGGTGGAGCAGACAGGATCAGCTGTAAAGAAGAGGAGCTCCTCGTTAACTAGAATGGGGACTAAATCGCAGCAGTCCCCCAAGCTAGAGAAAGGGACAAAGGACGATCAAGCTCGTCGTACCCTTGCCAGCCCCTTGGACAGTGGTGTGATCAGCCGCCTGCTCACGCCCACGCAGGCCTCGTTAGCTAGGAGCAAGAGTACGGCTGCATTGTCAGCAGAAGGATCAGACCCCCCAGGTAATGGGCAGCACGCCCTGAGAGCAGAGCCGCCAGGGTCCCAGGTCCCCTGCCTCCCCCTGGGCAGCGCTTGTGTCCTTaCCGCCAACTACTCGGTGTCTGTGCAGAGTAATGCCTCGGCTAGCCCTCTACACCCTCCCCGCGGGCCCCTGCGCAGCCGCAGCATCGACCGGCAGAAGGCAGGCCCACcgtcctccacctcctctgAGGGAGGAGGTGACGGCACACAGTGTCCCGAGTCGCCGCCGTTCCCCCTCCCCGGCCCCTGCACCCACCAACACGGCCAAGAGGCCCCCCTCCCCAAGCGCCAAAGTCCCCGGAACCGCCCGCCCTCCCCAAATGCGGGGAAGCAgcgccccccctccccctccccacagCCTCTGTCCAAACCACCCCCCATCCAGCGCCCAGCACTCACCCCTACTGGGCCCCCCACTCTGCGGAAGAGGGACTCCAAACCAAAGGATAGCTCCCCTGTCCAGCCCCTCACCCCCCAGTCCCCTGACACCCCTGCAGCCAGCACACCCTCCAGCACCAAGACCAAAGATGATTGCCTAGGGCAGGGGGCAGCCGACAGGGGCGGAGAGGAGATGCTGAGCTTTCTGTTCTGCCTGCTCACGTGGCCCTCTGACTCACAGCTGACTGCAGATGCCGTCTGGAGAGACAAAGAGACTTTTATGACTTATGGAGCTGATTCCAGCTCCAAAGCCATTGCAGGGACCACCTCCGCGGAGGAGGCCGCTAAGATCCTGGCCGAGAACCGGCGCCTGGCAAGGGAGCAGAAGGAGCGTGAGGAGCAGCTGAGGATCCagcgagaggaggaggagagActgaggaaggaggaggagaagcgTCTGGCAGAACTGGAGCGTGTGCGGcgcgaggaggaggagaagcagCTGGCCGAGAaacggaagaagaaggaggaggagagagctCGTCTGGCTGAGGAGGAGAGAGCCAGGCTGGAGATAGAGGAGCAGGAGAGGCAGGTCGAACTGCAGCTACAGCGTGAGGAGGCCGAGGCACGGGCCCTGGAGGAGGCAGAGAAACAGaggcaggagagggagaggatcaTGCAGAGGAACCATCAGGAGCGCATGGAGAGGAAGAAGAGGATTGaggaaataatgaaaaggacaagaaaaacagaccaaaacgATTCTAAGaGAGATGAGCAAGGCATGCAGGAGGACGAAAACGGAGATGACCTGCTGAGCACGGATGGGGAAGCCAAGGAGGGAGAGCAGGGTGACATGGAGGACTTTGACGAAGGGGACTTGCTGGAGGAAGGGCAGCTTGAAGATCAGAGCCGGGCAGCAGAGAGTCCAGTGAATCGCCAGCCAGCCCCCAGCGAGCACCTTGAGGAGCCCTCTTGTCCTGGGCCGCTGGAGAGGCAAGGGAGTGTTAACGGCAAGACAGAGGTGGACGACAGGGAGAACAACAACGGGACGAGTCTGGAGGCTGACCAGCACGTGGCCATCAGGGTCACACCCAAAGCCAAGCTAGTGGATCACGTCAACCAAGACGCAGTGGAGATCCTTCCCAACCTCAACGGCAAGGCTGGCTCCTGGAGGTTCGAGGAGCTCATAGACCTGGGCAAGACAACGATAATTACTGTAGATGGCATTGGTGCTGATGACTGTAACCAAAACCTAATAGACGCTGCAGGCATTCCTGAAGGCCCCAGGGTAGCTTTTGAAGACAAGGGCGCAGTGACCTCATTAAGCAAACCCATTGAAGCTGTGTCAGTTCCCAAACAAAGCTGCTTAAGCAAGAGCGAGAGACCGAGAGCGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021346 True 2763 mRNA 0.60 23 15353756 15380123

Neighbor

gene id symbol gene type direction distance location
AMCG00021348 NA coding upstream 18094 15325459 ~ 15335662 (+)
AMCG00021340 NA coding upstream 163665 15157183 ~ 15190091 (+)
AMCG00021337 rbmx coding upstream 198852 15150163 ~ 15154904 (+)
AMCG00021339 NA coding upstream 230793 15121710 ~ 15122963 (+)
AMCG00021335 NA coding upstream 311678 15038966 ~ 15042078 (+)
AMCG00021350 mospd1,LOC107601124,LOC107560686,LOC107744569 coding downstream 88380 15468503 ~ 15474502 (+)
AMCG00021354 LOC105026395,LOC107751966,LOC105912120,LOC107601099,LOC103357578,LOC100696750 coding downstream 167158 15547281 ~ 15553002 (+)
AMCG00021359 NA coding downstream 191427 15571550 ~ 15599716 (+)
AMCG00021358 NA coding downstream 254516 15634639 ~ 15644985 (+)
AMCG00021360 NA coding downstream 273621 15653744 ~ 15660257 (+)
G85380 NA non-coding upstream 92791 15256448 ~ 15260965 (+)
G85381 NA non-coding upstream 94294 15257959 ~ 15259462 (+)
G85345 NA non-coding upstream 225791 15127289 ~ 15127965 (+)
G85344 NA non-coding upstream 226523 15126767 ~ 15127233 (+)
G85202 NA non-coding upstream 857907 14456628 ~ 14495849 (+)
G85412 NA non-coding downstream 25653 15405776 ~ 15410610 (+)
G85426 ddx26b,ints6l,LOC107658008 non-coding downstream 66188 15446311 ~ 15566826 (+)
G85440 NA non-coding downstream 107119 15487242 ~ 15529672 (+)
G85455 NA non-coding downstream 181622 15561745 ~ 15562917 (+)
G85497 NA non-coding downstream 195426 15575549 ~ 15576518 (+)
AMCG00021292 NA other upstream 1280631 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 1320199 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 1916348 13435307 ~ 13437408 (+)
G84749 NA other upstream 3253049 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 4366582 10963148 ~ 10987174 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 48354 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 683376 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 1210058 16590181 ~ 16592973 (+)
G85787 NA other downstream 1276521 16656644 ~ 16714038 (+)
G85869 NA other downstream 1617754 16997877 ~ 17004131 (+)

Expression


Co-expression Network