AMCG00021337 (rbmx)


Basic Information

Item Value
gene id AMCG00021337
gene name rbmx
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15150163 ~ 15154904 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021337
TGGAAAGTCACTCTCATGTTCGCCATATTGCAAAGAAAAACGCTTCACTCCACCATTCATTTCAAGTCCGCCATTTTGTCTTGCATGCTTCGTAGGCTGCGTCTACTAAGTTTTACTTGTCTGTTTGGTAATTTATCGGAAAAACATAAGTTAACGGCTAACCAGGCGTTGTCTTGTCGGCCAATTGAAGAGCACCCTTTagaaattaaaacaggGGCAAATATGGCTGAGGCAGACCGCCCGGGGAAGCTTTTCATCGGTGGGCTGAACACCGAGACCAACGAGAAGGCCCTGGAACAGTATTTCGGCAAATTCGGCAGAGTAGTGGAAGtgcTGTTGATGAAAGATCGTGAAACCAACAAATCCCGgggttttgcttttgtgacatTTGAAAGCCCAGCTGATGCAAAGGATGCTGCAAGGGAAATGAACGGAAAGTCCCTTGATGGTAAGCCAATTAAAGTAGAGCAAGCGACAAAACCATCCTTCGAGTCCGGAGGTCGGCGTGGGCCACCTTCACTTCACCCCAGGAGTCGAGGGTTGCCCAGAGGCCCAAGAGGCTCTAGAGGAGCACCGAGTGGAATGAGAGGCCCCCCAACTCGAGATCCCTTTTTTAAAGGCATATCGTCCAGAGGCCCACCACCAATGAAGAGAGGACCCCCACTTCGCAACGGAGGACCCCCTCCCAAGAGATCTGCACCCTCGGGACCAATGGGCAGACCTCCAATGTCACGGGAGAGAGACCCCTATGGACCACCACCACCCCGTAGAGACGCCATGCTTTCCAGGAGAGATGACTATCCATCTCCGAGGGATGACCATTACAGCACAAAGGACAGTTACTCTAGTCGGGATTACATCAGTTCCAGGGAAACGCGAGATTACGCCCCACCCCCAAGAGATTATGCCTACCGTGAATATCCTCACTCCAGTTCCAGAGATGAATATGGATCAATTTCACGAGGCTATAGTGACCGTGATGGCTATGGTGGAGGCCGTGAGCCTAGGGGCTACCTTGACCGACCCAGCGCAGGTTCCTACAGAGATCCCTATGATGGTTATGGTAACTCGCGCAGCGCCCCACCTTCAAGGGGTCCCCCACCATCCTACGGTGGAAGTGGTGGAAGCAGTCGCTATGACGACTATGGCAGCAGTTCCAGGGATGGATATGGAAGTCGTGACAGTTACCCCAGCAGCAGAAGCGACCCGTACTCCGCCAGTCGCGGCGAGCGTATTGGCAGGCAGGAGAGGGGACCGGCACCCCCGATCGAGAGAGGCTACCCTCCTCGGGAGTCGTACAGCAGTTCCAGCCGCGGAGCCCCCCGAGGTGGCGGCCGTGGGGGAAGCCGTTCCGATAGGGGAATAGCTCGAAGCAGATACTAAGGATGGACCTCAAAGTGAAATCAAAACAGACTTGAAAGAAAAaccatgacaaaaaaaaaaaaaggaacagtgCGTGTACGTGCATATTCTGTGCTTTTGAAAAGGAGAGCTATCAAAATGGATTGAACTTTTGTGGACAGAAAACAAAGCTTATTGTTGAGCTTTTTCCCCTCCCCCACACCCCTTCACCACCATAACTTTTATTTGAGAAGAAATTTGTTTATATgaccttttgttttatatattttaccccctcccaccccctcctcccgtGTTAATACTccagtcattttaaaagttgtgtattagactttttttttttgtacactaGTGCTGTTAAACTTGCTTCAATTCCCTGGAATAACATGCCTTTACATTTACTAATAAAGTTTTTATCAACAACCTTGTGATCAAAACTAGTGGATTTTCAAACCAAACAATGTATTCACAAATCTGCATTTGCCTTTAAAGAGTATTACTCCATTTGAAATGAAATCCGGTTTCCATCCAGCAATTCAAAAGTATTGATGAACCGCAAACATTGgaccttttatttaattcatatattgtaaataaaatgctgtatatCCAAATTTTCCACATGCAGATTCATTGTTGGACCGTGGTGTCACTGCAGAACAAAGGCAAATGTTTGTTGCAAACTCTTTATACCAGTAGTTTTCCTCAGTTGAAA

Function

symbol description
rbmx Predicted to enable chromatin binding activity and nucleic acid binding activity. Predicted to be involved in several processes, including RNA metabolic process; cellular response to interleukin-1; and regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in euchromatin; extracellular exosome; and nucleus. Predicted to be part of U12-type spliceosomal complex; catalytic step 2 spliceosome; and supraspliceosomal complex. Is expressed in several structures, including brain; digestive system; immature eye; notochord; and retinal ganglion cell layer. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Shashi type. Orthologous to several human genes including RBMX (RNA binding motif protein X-linked).

NR:

description
PREDICTED: RNA-binding motif protein, X chromosome isoform X1

GO: NA

KEGG:

id description
K12885 RBMX, HNRNPG; heterogeneous nuclear ribonucleoprotein G

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021337 True 2077 mRNA 0.48 9 15150163 15154904

Neighbor

gene id symbol gene type direction distance location
AMCG00021339 NA coding upstream 27200 15121710 ~ 15122963 (+)
AMCG00021335 NA coding upstream 108085 15038966 ~ 15042078 (+)
AMCG00021333 fgf13,LOC107744562,LOC102775774 coding upstream 267075 14880963 ~ 14883088 (+)
AMCG00021334 fgf13a,fgf13,LOC107658011,LOC107601138 coding upstream 283584 14857234 ~ 14866579 (+)
AMCG00021330 NA coding upstream 419160 14696587 ~ 14731003 (+)
AMCG00021340 NA coding downstream 2279 15157183 ~ 15190091 (+)
AMCG00021348 NA coding downstream 170555 15325459 ~ 15335662 (+)
AMCG00021346 NA coding downstream 198852 15353756 ~ 15380123 (+)
AMCG00021350 mospd1,LOC107601124,LOC107560686,LOC107744569 coding downstream 313599 15468503 ~ 15474502 (+)
AMCG00021354 LOC105026395,LOC107751966,LOC105912120,LOC107601099,LOC103357578,LOC100696750 coding downstream 392377 15547281 ~ 15553002 (+)
G85345 NA non-coding upstream 22198 15127289 ~ 15127965 (+)
G85344 NA non-coding upstream 22930 15126767 ~ 15127233 (+)
G85202 NA non-coding upstream 654314 14456628 ~ 14495849 (+)
G85185 dlg3 non-coding upstream 776606 14372720 ~ 14373557 (+)
G85098 slc25a5,LOC107378486,LOC104931197,LOC107748177,LOC105925769 non-coding upstream 997620 14109527 ~ 14152543 (+)
G85380 NA non-coding downstream 101544 15256448 ~ 15260965 (+)
G85381 NA non-coding downstream 103055 15257959 ~ 15259462 (+)
G85412 NA non-coding downstream 250872 15405776 ~ 15410610 (+)
G85426 ddx26b,ints6l,LOC107658008 non-coding downstream 291407 15446311 ~ 15566826 (+)
G85440 NA non-coding downstream 332338 15487242 ~ 15529672 (+)
AMCG00021292 NA other upstream 1077038 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 1116606 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 1712755 13435307 ~ 13437408 (+)
G84749 NA other upstream 3049456 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 4162989 10963148 ~ 10987174 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 273573 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 908595 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 1435277 16590181 ~ 16592973 (+)
G85787 NA other downstream 1501740 16656644 ~ 16714038 (+)
G85869 NA other downstream 1842973 16997877 ~ 17004131 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G243207 NA unknown NC_047609.1 CM018555.1 19115657 ~ 19119471 (-)
mexican tetra (Astyanax mexicanus) G211904 rbmx unknown NC_035920.1 CM008323.1 44128230 ~ 44132986 (+)