AMCG00021350 (mospd1,LOC107601124,LOC107560686,LOC107744569)


Basic Information

Item Value
gene id AMCG00021350
gene name mospd1,LOC107601124,LOC107560686,LOC107744569
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15468503 ~ 15474502 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021350
TAGGCACCTATGATTATTTGGCAGCTGTCCTTTGTAGACGATGTGTTCATTACCAATATATGATGTTGAACAGTAACgttatgattatatttaaataacgtGATCGCAAATAATGTCGCAGCAGCATCGGATagacatttacattattatagggctgtgtgtgttttgattgtgtTGATTACAGTTGTTACAGTGGTATATTAAtctagagctgatgtgactttaAGATTGACTTTAAGACAGTATCGTATTTATGGATCTCGAGTATTATGTAGAAATGCAGCATTACATTCAAATGGTCCgttcatttcatttgtatgcAGGCGTCTGTATTGCTTTCCTGCTTGGGGATTAATGGTGATATACAGTGGTGATTGTGATGCACACATAATGATCTTGCACCACTGAACATCGATGACATGGATGTGTGCATTTATTAAGTCATTTTGCACGATTATAGTTCAACACAAAAAGTGCAGACGGGGACGCCTAATTCAGGTTTATTTGGGGATTCAAAGTGAAAGCCTTGCTATTGATGCGGTTTGGTTGATATAATTAGCTATTGTGGTCACTGCTGGATCTCGGCGTGTTTGATGGATGGTGTGAATCAGTGTCAGATGTCTGAAGAAGGAGCGACGGGCTTGTACATTATTACGCCCGTAAAGCGGACTGAGGCGCTTCGATCACGGACGTCTGGCGAACACCGAGAACAGGAAGTGCGTCACGGCGCACGGTCCGGCGGCTGCGTGTAAACATGCACACGTCATTAGCCACGTGTATCTGGGACGGGCTGAGCCGCGGTGCTGAACAGGGCTGTTGCCACCAACACACCGCTCTCCGCCCCGTTTCCACCCTGGGCCAATATTGCTGCACAGTATTGGGCCAGGGTTTGTGGCTCCATTACCCTGGGACTGCAAAAGACTCCAGTTTTTTTTGTCCAACCAGTGTCTATTTCATTATCTTCTGTATCCTATTGCATGTAAACAGAATAATTATACCAATAACATAAACATCTCCTGGGTTTTATCAGTGTAGATTTCAAGACTaatcaacccccccccacacacacactttctaaTCTGTCCTCCAAGGTGCAGTCTGAACCGTTTGATACCACACTCACTTATTATCCCCGTCTCCTTCTCCAAGTTGTATACCTGTTCCACCTCCCTGTTATAATATTTGAGCTGAGAAACCTTGCTGTTTTTGTAGCGCTGTGCTTGTGTGCTTCTGTCCAGCAGCTGGGGGCAGGAGGCAGTTAACAGCTCTCCCTCCTGTCGAGCTCAGGGGCGTTAACGAGATGCAGCTAACGCGCTGAGGCCAGTGGAGCTGGGAAGACAGAGGAGGTCCCCTTCACCTGGAGGGACATTAGCCTACAGAGCacccacagagacagagagaagggggagagggacagagagtgTGAGCGAGAGAGCGCAGAGTCTGTGCCAATGCAGCAGCACAGACGGCAGCCAGAGCTAGTGGAAGGCAGCCTTCCCGTGTTCGTGTTCCCCACTGAGCTGATCTTCTATGCTGATGAACAGGCCTCACACAAGAAGGTGCTCACCCTCTACAACCCCTACGAGTTTGCCTTAAAGTTCAAAGTATTGTGCACAGCGCCCAATAAGTATGCTGTGGTGGACGCCACTGGTGCTGTGAAACCCCAGTGCTGTGTTGACATCGTGATCCGTCACCGCGATGTGCGCGCCTGTCACTATGGCGTGATCGACAAGTTCCGGCTGCAGGTGTCAGAGCAGAGTCAGCGGAAGGCTCTGGGGCAAAAAGAGGTGATCGCCACCCTGCTGCCCTCCGCCCAGGAGCACGCCCAGCCCCGGCcacaggaggaggagaggagggtgAAGGAACAGCTGGCCGACAGCATCTTCTTCGAGCAGGCCACCTTCCAGCCAGGTCTTCTTACAATGGTTATTCTACGGACATGAAGTACTTTGGGTGTGAGGAGAGCCcaggagagagactgagacacagcCTGTGGAAAACACTGTGCCtggagaggggaggaggagggagggaagccATTGCACATGAAATGTTTTTAACCGTTTAAAAACAcgcaaaaaatacaaaaaataaatgtatatttaaaaaaaaggcaaaaaaagtACCATCCAAGTGAGGGCTGTAGGGAGTTTGATGGACAGAATGAAGCACAGTGCCTGACTGAGgcaggggttggggg

Function

symbol description
mospd1 Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human MOSPD1 (motile sperm domain containing 1).

NR:

description
PREDICTED: motile sperm domain-containing protein 1 isoform X2

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021350 True 2200 mRNA 0.49 4 15468503 15474502

Neighbor

gene id symbol gene type direction distance location
AMCG00021346 NA coding upstream 88380 15353756 ~ 15380123 (+)
AMCG00021348 NA coding upstream 132841 15325459 ~ 15335662 (+)
AMCG00021340 NA coding upstream 278412 15157183 ~ 15190091 (+)
AMCG00021337 rbmx coding upstream 313599 15150163 ~ 15154904 (+)
AMCG00021339 NA coding upstream 345540 15121710 ~ 15122963 (+)
AMCG00021354 LOC105026395,LOC107751966,LOC105912120,LOC107601099,LOC103357578,LOC100696750 coding downstream 72779 15547281 ~ 15553002 (+)
AMCG00021359 NA coding downstream 97048 15571550 ~ 15599716 (+)
AMCG00021358 NA coding downstream 160137 15634639 ~ 15644985 (+)
AMCG00021360 NA coding downstream 179242 15653744 ~ 15660257 (+)
AMCG00021361 LOC106586057,LOC106612107,LOC105026369 coding downstream 266233 15740735 ~ 15752170 (+)
G85412 NA non-coding upstream 57893 15405776 ~ 15410610 (+)
G85380 NA non-coding upstream 207538 15256448 ~ 15260965 (+)
G85381 NA non-coding upstream 209041 15257959 ~ 15259462 (+)
G85345 NA non-coding upstream 340538 15127289 ~ 15127965 (+)
G85344 NA non-coding upstream 341270 15126767 ~ 15127233 (+)
G85440 NA non-coding downstream 12740 15487242 ~ 15529672 (+)
G85455 NA non-coding downstream 87243 15561745 ~ 15562917 (+)
G85497 NA non-coding downstream 101047 15575549 ~ 15576518 (+)
G85507 NA non-coding downstream 278580 15753082 ~ 15755432 (+)
G85552 NA non-coding downstream 446237 15920739 ~ 15922721 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other upstream 36139 15428477 ~ 15432364 (+)
AMCG00021292 NA other upstream 1395378 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 1434946 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 2031095 13435307 ~ 13437408 (+)
G84749 NA other upstream 3367796 12075345 ~ 12100707 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 588997 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 1115679 16590181 ~ 16592973 (+)
G85787 NA other downstream 1182142 16656644 ~ 16714038 (+)
G85869 NA other downstream 1523375 16997877 ~ 17004131 (+)
AMCG00021441 NA other downstream 1995823 17470325 ~ 17473396 (+)

Expression


Co-expression Network