AMCG00021340


Basic Information

Item Value
gene id AMCG00021340
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15157183 ~ 15190091 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021340
ATGAACCCGGAGGAACAGGCGGTAACgtggctcatatctttaggagTCCTAAACTCGCCCAAGAAGAACATTGCGGACCCAGAAGAGTTCCTTAAATCGTGTCTGAAAGATGGGGTGGTTCTGTGCAAGCTCATGGACAGGCTCGTACCCGGGTCCGTCCACAAGTACTGCCAGGAGCCGAGGACCGAAGCGGACTGCCTGGCCAACATCAGAGAGTTCCTCAAAGGATGTACAACGTTGAAAATAGAGGGCTTTGAACCAGAAAGCCTCTACACAGGAGAAAACTTTGGAAAGATCCTGAACACACTTCTTGCTGTAAACTTTGCCACTCAAGATCGAGTGGTCGAGAGATCATGTCAACACGCAGGACCTCAAGCACCTAGTCAGGCTGCCAGGTCACAGAGTGCGTCCTCTTTAAAATCAACGAAGTCTGTGCGTAGACAATCTAAAACCATGGAGATGAGGGAGAACGGTGGTCAGTCAGTGATGGTGAAGGCACGCTTCAACTTCAAGCAGAATAATGAGGACGAGCTATCCTTTGGCAAGGGTGACATCATCTGCGTGACGCGCATGGAAGAGGGCGGCTGGTGGGAGGGCACGCTCAATGGCAAGACTGGCTGGTTTCCAAGCAACTACGTTCGAGAGATCAAGCCCTCAGACAAGCCTGTGTCGCCCAAGGCCGTAAAGGAGTTCGACATGCCACAGCTGACCAAGAACTATTACAGTGTGGTAGTGCAGGATATCCTCGACAATGAACGAGAATTCGCCAAAGAGCTACAGGCACTGCTTGGCTGCTACCTTCGGCCCCTGCAATCCAGCGACAAGCTGAGTGCTGCTGACAGCATGTGTCTAGTGGGAAACTTGGAGGAGATCCTCACTTTCCAGCAGGGTCTCTGTGTCGCTCTGGAGGAGTGCACAAAaTTTCCAGAGGGTCAGCAGAGGCTGGGCAGCTGTTACCTGAACCTCTTTTGTCAGATCAAGGCGCTGTACCTGACCTACTGCTCTAACCACCCCTCTGCGGTTTGTGTGCTCACTGACCACGGGGATGAGCTGGACAAGTTCATGGAAAGCCATGGAGCTAGCAGCCCAGGTATCCTCACCCTGACCACGAGCTTGAGCAAGCCCTTTATGAGGCTGGAGAAATACCCCTCactgctgcaggagctggagcGCCATGTAGAGGAGTCCCATCCTGATTACAATGACATCCTCAAAGCAACAGTGGCCTTCAAAGGCCTTGTGgtaCTATGTCAGGATTTGCGCAAAAGGAAGAACCTTGAGCTGCAGATCTTGTCGGAGCCGGTCCGGGGCTGGGAGGGGGAGAACATCAGGTCTCTGGGTCACGTGATCTACATGTCCCAAGTCATGATGCAGAGTGGGGCCAGCGAGGACAAAGAAGAGCGGTACTTCATGTTGTTCCCCAACGTCCTGGTCATGCTTTCTGCCAGTCCTCGCATGAGTGGCTTCATCTACCAGGCAAGATTGTCCCTGACAGGAATGGCAGTGACCAAATTGGCAGAAGATCGTGAAATGGGGCACTATGCATTTGAAATCACAGGGAATATGATCGAGCGCATCACGGTCTATTGCAACAGCCAACAAGATCTGCAGGAGTGGCTGGAGAGCTTGCACAGCATCACAAAAGGAGGGAGTCCTGTGAGCACCATAGGCAAGaacaCAGACGGCAAGTCGGGCTCTGCCCTCAGCACCCCCTCCCATCCAACACTCTCCCAGGGGTTTGGCACATCCACTGTCCGTGGCCCACTGGAGCCCCCCAAGATCACCAAGCCATGGATGTCTTATATCCTGAAGGACTCCAGTAAAAGTCCCAGAACCATGAAGAAATTTCTCCCAAAGCGCAAGGAGAGAAAGGCGTCCGATGATGACTTTCTTCTGAGGAAAAGTACTGCTGCCCTGGAAGAGGACGCACAGATTCTGAAAGTCATCGAGGCATACTGCACGGGGGCCAGCTTTCACCATACTGGTGGCTCTATTTCTCGGAAGGAGTCGGTTCCACAAGTCCTTCTGCCGGAGGAGGAGAAAATCATTGTGGAAGAAACAAAGAGCAACGGTCAGACAGTCATTGAGGAAAAGAGTCTTGTTGATGCTGTATATGCTTTGAAGGACGAGGTCCAGGAGTTAAAGAAGGAGAATAAGAGAATGAAGCAgtgtctggaggaggagcaGAAGTCGCGGAAGGATCTCGAGAGGCTCGTGAGGAAACTGGTCAAGCAGAAGAACGACTGTACTTGGGAGGATGCCGGCCACTAA

Function

GO:      GO:0005089,GO:0032319

KEGG:

id description
K05729 ARHGEF6, PIXA; Rho guanine nucleotide exchange factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021340 True 2271 mRNA 0.52 22 15157183 15190091

Neighbor

gene id symbol gene type direction distance location
AMCG00021337 rbmx coding upstream 2279 15150163 ~ 15154904 (+)
AMCG00021339 NA coding upstream 34220 15121710 ~ 15122963 (+)
AMCG00021335 NA coding upstream 115105 15038966 ~ 15042078 (+)
AMCG00021333 fgf13,LOC107744562,LOC102775774 coding upstream 274095 14880963 ~ 14883088 (+)
AMCG00021334 fgf13a,fgf13,LOC107658011,LOC107601138 coding upstream 290604 14857234 ~ 14866579 (+)
AMCG00021348 NA coding downstream 135368 15325459 ~ 15335662 (+)
AMCG00021346 NA coding downstream 163665 15353756 ~ 15380123 (+)
AMCG00021350 mospd1,LOC107601124,LOC107560686,LOC107744569 coding downstream 278412 15468503 ~ 15474502 (+)
AMCG00021354 LOC105026395,LOC107751966,LOC105912120,LOC107601099,LOC103357578,LOC100696750 coding downstream 357190 15547281 ~ 15553002 (+)
AMCG00021359 NA coding downstream 381459 15571550 ~ 15599716 (+)
G85345 NA non-coding upstream 29218 15127289 ~ 15127965 (+)
G85344 NA non-coding upstream 29950 15126767 ~ 15127233 (+)
G85202 NA non-coding upstream 661334 14456628 ~ 14495849 (+)
G85185 dlg3 non-coding upstream 783626 14372720 ~ 14373557 (+)
G85098 slc25a5,LOC107378486,LOC104931197,LOC107748177,LOC105925769 non-coding upstream 1004640 14109527 ~ 14152543 (+)
G85380 NA non-coding downstream 66357 15256448 ~ 15260965 (+)
G85381 NA non-coding downstream 67868 15257959 ~ 15259462 (+)
G85412 NA non-coding downstream 215685 15405776 ~ 15410610 (+)
G85426 ddx26b,ints6l,LOC107658008 non-coding downstream 256220 15446311 ~ 15566826 (+)
G85440 NA non-coding downstream 297151 15487242 ~ 15529672 (+)
AMCG00021292 NA other upstream 1084058 14069330 ~ 14073125 (+)
AMCG00021296 NA other upstream 1123626 14016133 ~ 14033557 (+)
AMCG00021267 timm8a,LOC107593201 other upstream 1719775 13435307 ~ 13437408 (+)
G84749 NA other upstream 3056476 12075345 ~ 12100707 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other upstream 4170009 10963148 ~ 10987174 (+)
AMCG00021349 mmgt1,tmm32,LOC107658091,LOC107560676,LOC102787804 other downstream 238386 15428477 ~ 15432364 (+)
AMCG00021373 ubl3b,LOC107658069,LOC107707244,LOC108432919,LOC101472018,LOC107092570,LOC105029324,LOC100692344,LOC103390851 other downstream 873408 16063499 ~ 16073621 (+)
G85764 LOC103366846,LOC106930986 other downstream 1400090 16590181 ~ 16592973 (+)
G85787 NA other downstream 1466553 16656644 ~ 16714038 (+)
G85869 NA other downstream 1807786 16997877 ~ 17004131 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000577 eif5b coding NC_007112.7 CM002885.2 45925150 ~ 46020725 (+)