RNA id: AMCG00021346


Basic Information

Item Value
RNA id AMCG00021346
length 2763
RNA type mRNA
GC content 0.60
exon number 23
gene id AMCG00021346
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15353756 ~ 15380123 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGAGGTGGACTACGGGCAGAAGTGCCAGGCGGTGGCCCAGACTCCTCTCCTCAGCATCCCTTCTTCGAGTCTGAGCCCAGACTCCACAGCGCGCAGCAACCGTTGCTATGCAGCTGTTTGGAAAGGAGTGGATGAACTTTGGAAGATGCAGCAAGTGGCCGTGGCCCAGGCCCAAGCAGAGGAGCGGCGCAGTCAAGCGGGCAGCAGTCCCGTGCCAGTAGTTCCTTCAACGGGCAGTGCCAAGACAGGCAACAAGCCAGCTGCTAAGGAATCGCAGATTCTAGAGCGCGAGCGGAAGGCAAAGCTGCAGTACGAGCGGCAGATGGAGGAGCGGCAGAAGAAGCTAGAGGAGCAGCGCAGGAAGGAGGAGCAGCGCCGGGCAGCCGTGgaggagaaaaggaaacagAAGCATGAGGAGGAGAAGGAGCATTACGAGGCAGTGATGCGGAGGACACTGGAGCGAAGCCAGAGGCTGGAGCAGAGGCAAAAGCGATGGTCCTGGGGCGGAGGTCTGACTGTGGACCCGGAGAGCAAGACTGACAAGCGCTCTACGTCCACAATGAACCTGAAACAACCCGATTCTGTCATCAGCAAACGCCTTTCCACATCCTCTGCTACACTCATGAATTCACCTGACAAAAGTGCTAAAAGGAGGAGCTCCTCTCTTAACCGGTTGCCTGTCAAGGCCTCCCAGCCTGCTAAGGAAGCCCAAAAACCCACTCGGGTGGAGCAGACAGGATCAGCTGTAAAGAAGAGGAGCTCCTCGTTAACTAGAATGGGGACTAAATCGCAGCAGTCCCCCAAGCTAGAGAAAGGGACAAAGGACGATCAAGCTCGTCGTACCCTTGCCAGCCCCTTGGACAGTGGTGTGATCAGCCGCCTGCTCACGCCCACGCAGGCCTCGTTAGCTAGGAGCAAGAGTACGGCTGCATTGTCAGCAGAAGGATCAGACCCCCCAGGTAATGGGCAGCACGCCCTGAGAGCAGAGCCGCCAGGGTCCCAGGTCCCCTGCCTCCCCCTGGGCAGCGCTTGTGTCCTTaCCGCCAACTACTCGGTGTCTGTGCAGAGTAATGCCTCGGCTAGCCCTCTACACCCTCCCCGCGGGCCCCTGCGCAGCCGCAGCATCGACCGGCAGAAGGCAGGCCCACcgtcctccacctcctctgAGGGAGGAGGTGACGGCACACAGTGTCCCGAGTCGCCGCCGTTCCCCCTCCCCGGCCCCTGCACCCACCAACACGGCCAAGAGGCCCCCCTCCCCAAGCGCCAAAGTCCCCGGAACCGCCCGCCCTCCCCAAATGCGGGGAAGCAgcgccccccctccccctccccacagCCTCTGTCCAAACCACCCCCCATCCAGCGCCCAGCACTCACCCCTACTGGGCCCCCCACTCTGCGGAAGAGGGACTCCAAACCAAAGGATAGCTCCCCTGTCCAGCCCCTCACCCCCCAGTCCCCTGACACCCCTGCAGCCAGCACACCCTCCAGCACCAAGACCAAAGATGATTGCCTAGGGCAGGGGGCAGCCGACAGGGGCGGAGAGGAGATGCTGAGCTTTCTGTTCTGCCTGCTCACGTGGCCCTCTGACTCACAGCTGACTGCAGATGCCGTCTGGAGAGACAAAGAGACTTTTATGACTTATGGAGCTGATTCCAGCTCCAAAGCCATTGCAGGGACCACCTCCGCGGAGGAGGCCGCTAAGATCCTGGCCGAGAACCGGCGCCTGGCAAGGGAGCAGAAGGAGCGTGAGGAGCAGCTGAGGATCCagcgagaggaggaggagagActgaggaaggaggaggagaagcgTCTGGCAGAACTGGAGCGTGTGCGGcgcgaggaggaggagaagcagCTGGCCGAGAaacggaagaagaaggaggaggagagagctCGTCTGGCTGAGGAGGAGAGAGCCAGGCTGGAGATAGAGGAGCAGGAGAGGCAGGTCGAACTGCAGCTACAGCGTGAGGAGGCCGAGGCACGGGCCCTGGAGGAGGCAGAGAAACAGaggcaggagagggagaggatcaTGCAGAGGAACCATCAGGAGCGCATGGAGAGGAAGAAGAGGATTGaggaaataatgaaaaggacaagaaaaacagaccaaaacgATTCTAAGaGAGATGAGCAAGGCATGCAGGAGGACGAAAACGGAGATGACCTGCTGAGCACGGATGGGGAAGCCAAGGAGGGAGAGCAGGGTGACATGGAGGACTTTGACGAAGGGGACTTGCTGGAGGAAGGGCAGCTTGAAGATCAGAGCCGGGCAGCAGAGAGTCCAGTGAATCGCCAGCCAGCCCCCAGCGAGCACCTTGAGGAGCCCTCTTGTCCTGGGCCGCTGGAGAGGCAAGGGAGTGTTAACGGCAAGACAGAGGTGGACGACAGGGAGAACAACAACGGGACGAGTCTGGAGGCTGACCAGCACGTGGCCATCAGGGTCACACCCAAAGCCAAGCTAGTGGATCACGTCAACCAAGACGCAGTGGAGATCCTTCCCAACCTCAACGGCAAGGCTGGCTCCTGGAGGTTCGAGGAGCTCATAGACCTGGGCAAGACAACGATAATTACTGTAGATGGCATTGGTGCTGATGACTGTAACCAAAACCTAATAGACGCTGCAGGCATTCCTGAAGGCCCCAGGGTAGCTTTTGAAGACAAGGGCGCAGTGACCTCATTAAGCAAACCCATTGAAGCTGTGTCAGTTCCCAAACAAAGCTGCTTAAGCAAGAGCGAGAGACCGAGAGCGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106556 lncRNA upstream 92791 15256448 ~ 15260965 (+) True G85380
TU106557 lncRNA upstream 94294 15257959 ~ 15259462 (+) True G85381
TU106508 lncRNA upstream 225791 15127289 ~ 15127965 (+) True G85345
TU106507 lncRNA upstream 226523 15126767 ~ 15127233 (+) True G85344
TU106330 lncRNA upstream 857907 14456628 ~ 14495849 (+) True G85202
TU106605 lncRNA downstream 25653 15405776 ~ 15410610 (+) True G85412
TU106595 lncRNA downstream 48354 15428477 ~ 15432364 (+) True AMCG00021349
TU106624 lncRNA downstream 66188 15446311 ~ 15566826 (+) False G85426
TU106641 lncRNA downstream 107119 15487242 ~ 15529672 (+) True G85440
TU106625 lncRNA downstream 135330 15515453 ~ 15566826 (+) True G85426
AMCG00021348 mRNA upstream 18094 15325459 ~ 15335662 (+) True AMCG00021348
AMCG00021340 mRNA upstream 163665 15157183 ~ 15190091 (+) True AMCG00021340
AMCG00021337 mRNA upstream 198852 15150163 ~ 15154904 (+) True AMCG00021337
AMCG00021339 mRNA upstream 230793 15121710 ~ 15122963 (+) True AMCG00021339
AMCG00021335 mRNA upstream 311678 15038966 ~ 15042078 (+) True AMCG00021335
AMCG00021349 mRNA downstream 48400 15428523 ~ 15431448 (+) False AMCG00021349
AMCG00021350 mRNA downstream 88380 15468503 ~ 15474502 (+) True AMCG00021350
AMCG00021354 mRNA downstream 167158 15547281 ~ 15553002 (+) True AMCG00021354
AMCG00021359 mRNA downstream 191427 15571550 ~ 15599716 (+) True AMCG00021359
AMCG00021358 mRNA downstream 254516 15634639 ~ 15644985 (+) True AMCG00021358
TU105723 other upstream 3253049 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 4366582 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 5930337 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 6720346 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 8232519 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 683477 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 1210058 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 1276521 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 1276521 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 1617754 16997877 ~ 17004131 (+) True G85869

Expression Profile