RNA id: TU106625


Basic Information

Item Value
RNA id TU106625
length 1513
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G85426
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15446311 ~ 15566826 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTGTTTTCCATTCCCTAACTGCGCAATAGTGTTATTCTGAGTCAATGTAATCTATAGTATTCCTCTCTAAACTGGCATCAGATATTCATATCTTCTGCTTCCATTTCTGTCAAAAACAATACTACATATCCTAATATAGTGTGTACACATACTGGTTGATcagttgtgtttgtgctgtCCTCTTCATCACATTGTCATGGTGTAACTCCTCTGAGTGCCAGTGGCTCCAGCACAGTGCTCCACATGTCCCAGATGTTGTTACATTGTGAATTTTATTGGTATAAGGATCGTCTGTGGGTGCACCCATAAAATACACCCACAAGATGTGCAATtccacattttaattcatttcaattttaaaaaaacaaaagtgcatggaataataatttatatacagaTAGGACCCCCTGATGGAACATTGTATAACAAAGctgcccaaaaaaaaaagaacttttTGGATAATACAATACTGAAATGGATGCAATGCTACTTCAGTCAGGTCATCAAAGCATGAACTCAGGTCTGAGTGGGAGTTTTTATTGCACTAACCTAAAACCCCAGGTTCAGGGTGCAATTGGtaaaagaaacattacatatgGCAGGGGGGCAATACATCAACACACAGTTTTTCATCTCCCATTTCAATCAGTGTAATAAAGGACTGACATTGGAGGAGTGTGCTTTTAGggctagttaaaaaaaataaggtgCAATTTCCACATCATTTTACAGAGATGTGGCCTGTCCAATTGTTTATATGTCTGCAACAGCCATTTTGATGGCACCTTGTGGAGAATTTAGCTGGTGGTGTAAAAGTTTTGCAGTGGGATGGGACCTACACAAATTTGGTCatgaaatagttttgttttgtcttgtcttgttCTCCACTTCTACTTGTTAGGGAAGTGCAGTCTGCAACCCTCAACAAAAATTAATGACTAATTAGGAGTTAAAATGGGTTGGCAAGCATGCGGGCACTCAGgcgaatacacacacacgcacgcacgcacgtaCGCACGCCTGAAGTGATATACATAGAATGCACAGCAGTCAACTCGGCtcatatatttatagattaCTACAGAGCTGTCTCGCTGGAAACAAGAGGAGCTCTGTTCCCTAAAATTATTGTGCAATTATGAAAGACAAGAAAGGCATCATTCAATTTGGCTTGAAGAAGGAAACGACAACATGGGACGAGAAGATTGTCATGGTCAATTTGTAACCATGTCAGCATCCCACAGCcgatatttcatttttgtctcgaagacattttaaacattcattcaatcattgtaacattaaaaaatatataaatagtcaAAATTATAAAAAGCTATTTCACTAAAATGTAAGTACTGTACTACCATAATTTTAACCTAAATGAAGTCTATCTGAGGCAGAGTTGAAACGCAAAGGCAAAGTCTAGTGCCTGATTGttctcatacatacacacaaggAAGAAGGCCTTCACAGTTAATTTACAGAAagccttttttttTGTCTTAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106595 lncRNA upstream 83089 15428477 ~ 15432364 (+) True AMCG00021349
TU106605 lncRNA upstream 104843 15405776 ~ 15410610 (+) True G85412
TU106556 lncRNA upstream 254488 15256448 ~ 15260965 (+) True G85380
TU106557 lncRNA upstream 255991 15257959 ~ 15259462 (+) True G85381
TU106508 lncRNA upstream 387488 15127289 ~ 15127965 (+) True G85345
TU106713 lncRNA downstream 8723 15575549 ~ 15576518 (+) True G85497
TU106723 lncRNA downstream 186256 15753082 ~ 15755432 (+) True G85507
TU106784 lncRNA downstream 353913 15920739 ~ 15922721 (+) True G85552
TU106874 lncRNA downstream 573697 16140523 ~ 16169886 (+) True G85623
TU106936 lncRNA downstream 722923 16289749 ~ 16292193 (+) True G85674
AMCG00021350 mRNA upstream 40951 15468503 ~ 15474502 (+) True AMCG00021350
AMCG00021349 mRNA upstream 84005 15428523 ~ 15431448 (+) False AMCG00021349
AMCG00021346 mRNA upstream 135330 15353756 ~ 15380123 (+) True AMCG00021346
AMCG00021348 mRNA upstream 179791 15325459 ~ 15335662 (+) True AMCG00021348
AMCG00021340 mRNA upstream 325362 15157183 ~ 15190091 (+) True AMCG00021340
AMCG00021359 mRNA downstream 4724 15571550 ~ 15599716 (+) True AMCG00021359
AMCG00021358 mRNA downstream 67813 15634639 ~ 15644985 (+) True AMCG00021358
AMCG00021360 mRNA downstream 86918 15653744 ~ 15660257 (+) True AMCG00021360
AMCG00021361 mRNA downstream 173909 15740735 ~ 15752170 (+) True AMCG00021361
AMCG00021366 mRNA downstream 213163 15779989 ~ 15784971 (+) True AMCG00021366
TU105723 other upstream 3414746 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 4528279 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6092034 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 6882043 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 8394216 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 496774 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 1023355 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 1089818 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 1089818 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 1431051 16997877 ~ 17004131 (+) True G85869

Expression Profile