RNA id: TU106713



Basic Information


Item Value
RNA id TU106713
length 970
lncRNA type intronic
GC content 0.41
exon number 1
gene id G85497
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 15575549 ~ 15576518 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TACTCAGTCTCGGCTTGCTGCAGCAGTGAGTCCACCTCCATGCTTGACATGACCATACTTTGGCTTGCTATCTCTCTCCATTAAATCCTGCATGCCCCCCCCCATTTGAAAGCGTAACCCAAGGTTAGCGGCAAAATCATGGTCATGTGGCTGCGATTCCATTCTGTCAGACTAAACACTTGATATACAGGTGCctctaaatttaatttgtactgcctgcatgtttaataaaatggtaTAAGGTACCTGTAAGGGATAATTTGATGTTTGAGCTAGAAaacctgcatttaaaaatgggtCCTTCATAACCCCTTCCACCCTTTCCCCTCCTCCAAGGGTTGGTCATATCTCTTTGGATGTCCTGGTAAAGATGAGATAAACAAATTGTGTGGTGTTCAACTAGAGATTTAACCAATTGTCACAgaaatgtgttcaaataaataatgaaatcccaaaatgttatatttgttttttttttcccctcccctaAGGGTTACTCTTGGGCTGTGTAACAAAGTTAAGGAAATCAAGGGGCATGGGAGGGGTGGATATGTGCTTCTGGTTATGAGTTGTCATTCTAAGGAATCCTTTATAATTTATAAGAGATGTTGGCCTCTATTCATTCAAATGTTGGAAGTGTATtggaaagcaataaaatatcAGCCCTTGCCATGTTGACTGGCTAATTGATGAGTCTTTAACATTGAGACCGGTTCTACTGCTTCCAAGTTGCCAAGAAATGGTTTGTAGCCAGTGTGAAATCTGATTGTCCACCACTTGATGGCAGCAAATGCATCTTGTGCGGAAACTGAGTCACTGTAACAGAAATAAGACCTTAGAAATTTCTTCAGTTGACGTTTCCAGTCAAACATGGGCAACCATTTAAGCTgttacagctggtttcacagacctcagtTAGCACTAGTTTTCTAGATCACCGAACCTAAAGCTTTTTACAAAACTGGTGAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU106624 lncRNA upstream 8723 15446311 ~ 15566826 (+) False G85426
TU106625 lncRNA upstream 8723 15515453 ~ 15566826 (+) True G85426
TU106656 lncRNA upstream 12632 15561745 ~ 15562917 (+) True G85455
TU106641 lncRNA upstream 45877 15487242 ~ 15529672 (+) True G85440
TU106595 lncRNA upstream 143185 15428477 ~ 15432364 (+) True AMCG00021349
TU106723 lncRNA downstream 176564 15753082 ~ 15755432 (+) True G85507
TU106784 lncRNA downstream 344221 15920739 ~ 15922721 (+) True G85552
TU106874 lncRNA downstream 564005 16140523 ~ 16169886 (+) True G85623
TU106936 lncRNA downstream 713231 16289749 ~ 16292193 (+) True G85674
TU107030 lncRNA downstream 971139 16547657 ~ 16549345 (+) True G85746
AMCG00021354 mRNA upstream 22547 15547281 ~ 15553002 (+) True AMCG00021354
AMCG00021350 mRNA upstream 101047 15468503 ~ 15474502 (+) True AMCG00021350
AMCG00021349 mRNA upstream 144101 15428523 ~ 15431448 (+) False AMCG00021349
AMCG00021346 mRNA upstream 195426 15353756 ~ 15380123 (+) True AMCG00021346
AMCG00021348 mRNA upstream 239887 15325459 ~ 15335662 (+) True AMCG00021348
AMCG00021358 mRNA downstream 58121 15634639 ~ 15644985 (+) True AMCG00021358
AMCG00021360 mRNA downstream 77226 15653744 ~ 15660257 (+) True AMCG00021360
AMCG00021361 mRNA downstream 164217 15740735 ~ 15752170 (+) True AMCG00021361
AMCG00021366 mRNA downstream 203471 15779989 ~ 15784971 (+) True AMCG00021366
AMCG00021365 mRNA downstream 214219 15790737 ~ 15792149 (+) True AMCG00021365
TU105723 other upstream 3474842 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 4588375 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 6152130 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 6942139 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 8454312 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 487082 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 1013663 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 1080126 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 1080126 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 1421359 16997877 ~ 17004131 (+) True G85869

Expression Profile