RNA id: TU107177


Basic Information

Item Value
RNA id TU107177
length 5834
RNA type TUCP
GC content 0.45
exon number 3
gene id G85869
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 16997877 ~ 17004131 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAAAATGGAAACCAACTACAAAGTACATAATACACTCGTTTAGAATCAGAAATCTCtatcaaaatgaaaactttacaaaaatgtacaggattttcttttttttaaccttttatttttacagtaaaaaaaacaaacaaaacaaaaaaaaaatcgtaaACTAAAAGCCACAGCTATCTCATtgcatataaatattacatttggtCTGCCTTGTCGGCATTAACAAAAGTCCCTGAACTTTTCTAATAGAGGGTCCTGAGAGGTGGGTAGGGAGAAAGATTTGGCGAACTGGATTTGTCCCCAACACGCAGCTTCAGATCAGGCCAATAGTTACCAATACACCTGGACAGCTGCAGGTAAAATTACCTGCCACATGGAAATGAACAATAAAAGACTGAGCAGCAAAACCTGGGAGGACACACCTGTTCTGGAAAACAAAGATTTATTGCTCACTTAACTGTGgcctggaaaaaatgaaaacaaaagaaaaaaaaactgcaaacaaagaataaaaaaataaagtaaaaactgaaaaacaaacacaggtaACAGGTTTGCAACACTTCTGTTTGTCGGTGAtgtaaaactgacattttcacatttcacaaccAGGTTCAaagtttccatttatttattttaggatttACTCAGATTGCACCACCGCTACTGAAAGTCACAGGTGAAACCACCTGTAGTTTGGAGTTGcctcctttaaaaataaaatcctacaGATTGCACTCAAGACTGAGAGACAGAAGCTCACTAGCACTCCCCTCTGGATTAATTCAGAACtgaaatttatatattttaattatttgtcagGTTTCCAAATCAACCTGAACTTTCCAGGAACCTCAGGCAAGAGCCACAGATTCCATCTCAGTGTGGGAAAGCACAACATTGTGCACATAGGAGGATGGGCTAACTCATTGCATGCTTTGGCCTAACAGGCATGGGAGGGAAGACTCGTGGGCCTCAGGATCCAGGTCGTTGGAACAGCAGGATTCCAGATTAGGAGGAGGAGGTCATCAAGAACAAGGCCAAGTAGGCCTTTCTGGACTCTTGGCTGGGATGCAAGGCTGAGCTTGTCTGAGATGGGAAGGGTACAGTCACAGCCACTGAAGGCAGACCAGCACAAACTTACACTGAAGCACCCTTCCTCTGTAAAATAGCACCTGTAAGGAGACTGGAAAGGCTTCTGAGAAAAGTCTCCCCACTTGATACCCAAGAGACCAGAGTGCAGTAACTGCTCGCATCCCACACTactacaaaagaaaaggaagaccAACATAACCAAAGAAAATGGTCCTTCCATATtcttacaacaacaaaaatgtgaaggATGAGAATTTAGGTTTTGCCATTAAAATGTAGAGCttctacataaaataaaaatatgaaatagaaaTGTACTTATATATATCAACACCTCAAGAATAACTCCATAATCCACAGAGGCAGCACTAAACCAAGCCTCCAGCACTCCCTGGAGATTCACCATGTGGCAAAAATTATATCTCCCACTGAACAGCTGGAGTACACAGAGCAGCCATCTAAGCTCGACCCAAACGGTCTCTGCGCAGGACTAGTGGTGCTGCAGACTGGCCACAGTGACAGGAGCTCGAAGTGGTGCTCTGTGGTCATGAGCGATGCCAAACCTGCCCTAGCTCCTTCTCTCTATTTATCTACCCCCCACCACCTCTCCCTACAGAATTCTGGGGTTCAGTTGCCAAAATGTAACAGTTAAAAAAGTCCTTCCTCCTAGTCACCCTGGGCTGGCAGGCCAGGAACAGGAATGTGATGGACAACACGCAGCACAAATCTTTAACCGGTGTGCAGACAAATCTTTCCCATCGATCCTCACTGTGCACATCAGCCCTTATAGTTACTTTTATTGAACAGCAAGGTCAACAAAGAGGCTAATATTGGATGAGCAAAGGATCGGGGAGGAAATGAGTTCCACGTGTTGACAAATAACTTCAATCTACCAAAGCCAAATCAAAGCTCCTTCCTAAACTCAAGTCGGCAATATTAAGGTCCTGAACGTCATCCAGTACACAGCTCTCTCTAACTCGGCCAAACCCATCAACAGGAAAAAAACCTCAATGCTTCCTCCcacctcttcttcctcctcctccacagaAAACCCTTAGCATACTCCCTGATTAACAGCAGACTCaatttcatttaacatttaaaaataacgaccgtgataaaataattttaaaatcacacataCATTAGGCAATGCAACAGTATAAATGCgagtatataattaaaaaaacactaaaatacaaGATCTGAAAGACTTTTCATAAGAAGTTCATATACACAAAACAGggaagagggggaaagaaaaaaaatgtaaacaaagtgaCTGTGACTGCGCCAACACAGGCTCACAGAGATTGCTCATGCTCTCCCTGCTCACAAGGGGCACCACCATTACCTGCACACAGCTGCCAGGCTGCTTCAGGCTTGTACACACTTGACCTGCTCACACCTGCTCGTGCTCTCGCTGGCAATGAGTAGCCAAGTCTCTATGCAGGAAAACACTGCTCTGGTTGCAGACATTGACTGGGCACCAGGCGGAGCAGACAGCGGGGACCGTCTACACAATGCTGTAGACTTCAACAGtatgcacacaacacacacacatgcttttaCACACTGACCCCTGGACACACAGCTCTGCATCACTTCCAGGTCCTCCACATAGACTAGCTTGCAGTTGCACAACACACAGGCAACAGGAGTGCACTCTTAATCAGGTTATTCCTACACTTTCACAGCAATGGCCATCCCAGGCCTTCCTGTACACACAACTACTCTTCTTCTCATAGTGCTAGCTGGCTCAGgagagccacacacacacacacacacacacacactcacacacaaagcTACCATGTTCATTCCTGTTCATTAACACTTAGGTCTGAAGAGGTCATTCTTGCACATGAAGCGTTGGTCTCTCTCCACCTGGCTTCACCACACAGCACGGCACCGACCTGCAAAGCAACTGCAATGCTTGAGTAAGAGTCCAGAGGGAGGAATGCACTGCTCTGCTGGCAACAGCCTGAAGGAAGTTTAGTTGAAAAGGCCCAGCAGATCAGCCAAGAAAGAGAGTGTGTTCAAGAACAGAAACACACGGCTCATTTTCAGCAAACTGAACAAAGGACTCgagagaaaggaaaatcaaaaaacaaaacaataaaaaaaagcatcttTTGAGGTCTTTAAACCACCTACACGGCACATTGAGAGCCTTCATTGTAAGGGTCTCATCTGCTACATCAGTCTCTACAGTAGAGAGAGACAGGGCTGTAGCTCGGCATGGTTTGACTGTTCATCATTGGAGTTGTACCCAACCACCCCAGCCCCTCCTCCCTGACACACCCTCTGTGGTAATTGCTGAGAGCTGATGAAGAACTGAAGGTAATGCTCTGTACACAACTGAaatttaatgtgttaattgttcATTTAATGCTTgaaggatatttaaaaatatatatatacaaaaaaaatatatatacaaaaaaaaaaaaagtgagaagCCCTGATCAGACAAATCTCTGAAGTTggcaccattttttttttccagagttcATAGATTCAGAAACGAAATAGGCagtttcaaattgaaaacaattataaaaaataaaaataaaaaacgctACAGTTTAAAAGCCCCTTTGTggtgacaatttaaaaacaaaaatgtagttATTGATCACAAAGGTACCTGCCAGGATGAGATGagtgaaaaaactaaacccTGAAGGAGAACCAGCCCAGAGCGAGTGCCTCGTCCTGCTGAGCTGCTCTTctactctccctccctcccccccagccTGGCTTCTCAGTGTCACAGCTGCCACGTACTACTGAAAATATTGTGCAAatgtcattatcattattactctAGAAACAATTGCAACGTGTATAATACAAtagtgtaaaatataaatatttatatatccaaaaaaaaaaaacgaaacaagtGTTATGCTTATTCTGATGAGTTCTGTAGGTATGCCGTGAATACCCACAGTGCACCACAGTGTAATGCAGACAAGGTCTAATTTCACTgcacaaagaaaacattaaaaaaaatccttttaacTTCGGTTTCAATGCTTCAAAGTAGTTTGATCTCCAATCTCTTTAAACCTGTGGTAGGGCAAATaccttttctttattcattAGATGAGAACAGTCTAAATGGCTTTGACTGAACGACTATTGCATGAATGCactctgctttaaaaacaatacataaaaagacCCTAAAGCCAAGTTTCCATAGCgcttaatttgaaatgatttggTACGTCTGATTAAAAACCACAAGGTgcgtgagagaaagagagagtggcCTTCACCTTGACAGCACCAAGACTGAAGACGGCAGGACAGCCTGACAGACTGCCACAGGGTCCCCAAGTCCCACGATCATCCCGGCACACAGACCATCAGGGGCGGAAGTGACTACGGCCAAAGGGAACCGAGTGCCAAGCAGGAGAGGAGGCTGCCATCTAGATCCCACACATAGGCAACAGCTGATCTTATCGCGAGAAGTGGAGTTAGTATATTTGGTATCCCCACACTCCTTACGGGAGAAACGGGAAAACGGACAAGTGTACGGGCGGGCCAGAGGCAGCAGAGCGTGACATTGCGTCAGTGAGGGAGAGCGTggagagggaaagggggcaGGGTCAGTGCATTTTAAGGCTCTGCAGTGGGCTAAGGCTTGTGTTTAGCTGCTGGAGGATTTTGTGAATGGGAAAGAGGAAGAAGTGCATCATTGGCAAGAACTGTAGAGCACCACTGTCAAAGTAGAAGTAAACAAATTTCCCACACCTGCATgcttaccaaaaaaaaaaaaaaatgtagaaaaaaatcCCTGCAGTATAAAACGTagtaatttttcttttttcctttcaaattccatttaaataaagtgtctTGTCttctagtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggtggcaGGTAGAAGAAAATAGATGAAGGgaccaaatacattttttttttaaaaaaggatcaGTGGTTCCACCCCATCAGATGGCTGACCCGAGCCTTCTCCGTCATCCTGCGTACCCTGCCGGAGCGAGACATGCCCAGATTCAGGGGGTCCCCCGCGGGCGCCAGGGTGTCGTCCTCCGAGTCGTCATTGTACAGCACTGTCCGGCGACCCTGGTTACGGGTGTTGATGCGCGATGCTTTGTGCTGCGCGGGACGCTTGCCACCATCTGCCTGCGGTCGGCCTTGTACCTGCTGGCACTCCTCCTGttcctgctcctcttcctcttcgTCTTCCTCTTCGTCTCcctcttcctcatcctcctcttcctcttcctcttcctgctgctgctccaaGTCCTGCCTTCGTGAGCGTTTGGCCCGGCCGCCGCGTCCTGCCGCCGCTGCCTGTACCGCTGCTGCCGCCCCTTCATCCCGCCGCCGTTTTCTGTTGGTGTTCTTGGCAGTCTTCCCCCGGGCTTTGCGTTGCGGGCGCAGGAGGGCAGCTTTGCTATAGTCATGGTCGCCACCGTCCACAAAGTCACATTCTGACCCCTCGCCGCTGCTGCTCCCGGAGGCCTCACTgtcagaggaggaggaagaggatgatgatgaggatgatgatgatgaggaggaggaagacttcgaggaggaggaggaggtggagccCTGCTTCTCGCTGCACGACACCTCGCCCTCCTCAGGACCCAGGCCTAGACGCCGCCTGGCCGCTGCGCTGAGGGACCGTCCGCCTCCATTGGTCAGTGGCCCGTTTATCAGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107124 lncRNA upstream 188563 16807806 ~ 16809314 (+) True G85823
TU107071 lncRNA upstream 348029 16647139 ~ 16649848 (+) True G85784
TU107051 lncRNA upstream 400975 16596201 ~ 16596902 (+) True G85766
TU107047 lncRNA upstream 408466 16586317 ~ 16589411 (+) True G85763
TU107044 lncRNA upstream 413112 16584317 ~ 16584765 (+) True G85760
TU107184 lncRNA downstream 32441 17036572 ~ 17042575 (+) True G85876
TU107214 lncRNA downstream 82621 17086752 ~ 17087794 (+) True G85903
TU107274 lncRNA downstream 294028 17298159 ~ 17298813 (+) True G85941
TU107314 lncRNA downstream 455362 17459493 ~ 17459941 (+) True G85976
TU107316 lncRNA downstream 466194 17470325 ~ 17473396 (+) True AMCG00021441
AMCG00021421 mRNA upstream 68200 16922571 ~ 16929677 (+) True AMCG00021421
AMCG00021418 mRNA upstream 112998 16875998 ~ 16884879 (+) True AMCG00021418
AMCG00021419 mRNA upstream 164612 16832282 ~ 16833265 (+) True AMCG00021419
AMCG00021417 mRNA upstream 191072 16797658 ~ 16806805 (+) True AMCG00021417
AMCG00021416 mRNA upstream 207025 16778582 ~ 16790852 (+) True AMCG00021416
AMCG00021424 mRNA downstream 43482 17047613 ~ 17063209 (+) True AMCG00021424
AMCG00021423 mRNA downstream 62482 17066613 ~ 17071130 (+) True AMCG00021423
AMCG00021429 mRNA downstream 68220 17072351 ~ 17080517 (+) True AMCG00021429
AMCG00021430 mRNA downstream 78608 17082739 ~ 17097379 (+) True AMCG00021430
AMCG00021433 mRNA downstream 221709 17225840 ~ 17226928 (+) True AMCG00021433
TU107080 other upstream 283839 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 335995 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 404904 16590181 ~ 16592973 (+) True G85764
TU106850 other upstream 924259 16063600 ~ 16073618 (+) False AMCG00021373
TU105723 other upstream 4897170 12075345 ~ 12100707 (+) True G84749
TU107506 other downstream 1244359 18248490 ~ 18249686 (+) True G86121
TU107757 other downstream 2275634 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 2495669 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 3338479 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 3374292 20378423 ~ 20380424 (+) True G86616

Expression Profile